Wall clock time and date at job start Tue Mar 31 2020 10:52:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38279 * 119.92613 * 2 1 4 4 C 1.38112 * 120.07344 * 180.02562 * 3 2 1 5 5 C 1.38907 * 119.92461 * 359.97438 * 4 3 2 6 6 N 1.39677 * 120.07433 * 179.97438 * 5 4 3 7 7 C 1.46854 * 110.99764 * 303.95888 * 6 5 4 8 8 C 1.53037 * 109.51886 * 185.84178 * 7 6 5 9 9 C 1.53126 * 109.27801 * 300.81620 * 8 7 6 10 10 C 1.53124 * 109.15878 * 57.65645 * 9 8 7 11 11 H 1.08999 * 109.50059 * 62.28737 * 10 9 8 12 12 N 1.46892 * 109.50142 * 182.40643 * 10 9 8 13 13 C 1.46905 * 111.00013 * 274.99998 * 12 10 9 14 14 C 1.53002 * 109.47335 * 180.02562 * 13 12 10 15 15 H 1.09000 * 109.47018 * 55.00060 * 14 13 12 16 16 C 1.53000 * 109.46952 * 295.00222 * 14 13 12 17 17 C 1.52994 * 109.47324 * 174.99974 * 14 13 12 18 18 C 1.50702 * 109.47205 * 185.00138 * 17 14 13 19 19 H 1.07998 * 119.99863 * 0.02562 * 18 17 14 20 20 C 1.37874 * 119.99843 * 179.97438 * 18 17 14 21 21 N 1.31519 * 120.00439 * 0.02562 * 20 18 17 22 22 Si 1.86796 * 120.00070 * 179.97438 * 20 18 17 23 23 H 1.48508 * 109.47000 * 0.02562 * 22 20 18 24 24 H 1.48505 * 109.47346 * 119.99939 * 22 20 18 25 25 H 1.48500 * 109.47296 * 240.00262 * 22 20 18 26 26 C 1.46844 * 110.99933 * 68.16522 * 6 5 4 27 27 C 1.38913 * 119.85256 * 0.25668 * 5 4 3 28 28 C 1.38105 * 119.92380 * 359.49218 * 27 5 4 29 29 H 1.09000 * 109.46814 * 89.99963 * 1 2 3 30 30 H 1.08999 * 109.47352 * 210.00217 * 1 2 3 31 31 H 1.08999 * 109.47058 * 330.00362 * 1 2 3 32 32 H 1.08002 * 119.96595 * 0.03722 * 3 2 1 33 33 H 1.08003 * 120.03461 * 179.97438 * 4 3 2 34 34 H 1.08994 * 109.46310 * 65.82404 * 7 6 5 35 35 H 1.09004 * 109.45830 * 305.85091 * 7 6 5 36 36 H 1.09000 * 109.50480 * 180.88135 * 8 7 6 37 37 H 1.08992 * 109.50737 * 60.75564 * 8 7 6 38 38 H 1.08998 * 109.52297 * 177.56592 * 9 8 7 39 39 H 1.08999 * 109.51925 * 297.75795 * 9 8 7 40 40 H 1.00900 * 111.00544 * 38.95263 * 12 10 9 41 41 H 1.08994 * 109.47058 * 300.00407 * 13 12 10 42 42 H 1.09001 * 109.46912 * 60.00207 * 13 12 10 43 43 H 1.09001 * 109.47299 * 59.99994 * 16 14 13 44 44 H 1.09000 * 109.46840 * 179.97438 * 16 14 13 45 45 H 1.09000 * 109.47127 * 299.99772 * 16 14 13 46 46 H 1.09006 * 109.47155 * 305.00207 * 17 14 13 47 47 H 1.09005 * 109.46642 * 65.00003 * 17 14 13 48 48 H 0.96994 * 120.00471 * 179.97438 * 21 20 18 49 49 H 1.09002 * 109.46133 * 294.17868 * 26 6 5 50 50 H 1.09002 * 109.46165 * 54.15507 * 26 6 5 51 51 H 1.07994 * 120.04016 * 179.72185 * 27 5 4 52 52 H 1.07999 * 119.96703 * 180.25583 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1968 1.1984 0.0000 4 6 3.5780 1.2020 -0.0005 5 6 4.2740 -0.0001 -0.0005 6 7 5.6708 -0.0002 -0.0016 7 6 6.1961 0.7651 -1.1395 8 6 7.7190 0.6227 -1.1921 9 6 8.3207 1.1411 0.1170 10 6 7.7209 0.3603 1.2897 11 1 7.9840 -0.6934 1.1978 12 7 8.2498 0.8903 2.5535 13 6 9.5406 0.2720 2.8844 14 6 10.0584 0.8474 4.2042 15 1 9.3026 0.7169 4.9788 16 6 10.3565 2.3378 4.0287 17 6 11.3385 0.1158 4.6123 18 6 11.7807 0.5965 5.9705 19 1 11.2058 1.3484 6.4907 20 6 12.9185 0.0757 6.5493 21 7 13.6183 -0.8403 5.9160 22 14 13.4671 0.6720 8.2323 23 1 12.5152 1.6984 8.7283 24 1 13.4966 -0.4728 9.1778 25 1 14.8250 1.2642 8.1294 26 6 6.1980 0.5102 1.2703 27 6 3.5779 -1.2022 -0.0054 28 6 2.1968 -1.1986 0.0004 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3634 -0.8899 0.5139 31 1 -0.3633 0.8900 0.5138 32 1 1.6551 2.1327 0.0006 33 1 4.1161 2.1384 -0.0010 34 1 5.9335 1.8164 -1.0224 35 1 5.7636 0.3836 -2.0645 36 1 8.1102 1.2035 -2.0275 37 1 7.9820 -0.4269 -1.3230 38 1 9.4016 1.0018 0.1014 39 1 8.0906 2.2006 0.2292 40 1 8.3287 1.8956 2.5192 41 1 9.4124 -0.8058 2.9839 42 1 10.2577 0.4809 2.0905 43 1 9.4445 2.8590 3.7380 44 1 10.7249 2.7478 4.9690 45 1 11.1123 2.4683 3.2541 46 1 11.1475 -0.9567 4.6510 47 1 12.1218 0.3193 3.8820 48 1 14.4190 -1.2064 6.3231 49 1 5.9353 1.5628 1.3761 50 1 5.7669 -0.0564 2.0957 51 1 4.1159 -2.1386 -0.0099 52 1 1.6549 -2.1328 0.0008 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000877066981.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:52:38 Heat of formation + Delta-G solvation = 5.469844 kcal Electronic energy + Delta-G solvation = -26061.750345 eV Core-core repulsion = 22638.619572 eV Total energy + Delta-G solvation = -3423.130773 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.48149 -38.64684 -36.69301 -34.62429 -33.08559 -31.89140 -31.28599 -31.09028 -29.05023 -26.78394 -26.66741 -25.20290 -23.95914 -23.02946 -22.73377 -21.89335 -20.97916 -19.92546 -18.87592 -17.42091 -16.42192 -15.81561 -15.62747 -15.37902 -15.00028 -14.82387 -14.69023 -14.30364 -14.05660 -13.87690 -13.73818 -13.61518 -13.55104 -13.12816 -12.77160 -12.55416 -12.44872 -12.29459 -12.04566 -11.83203 -11.74078 -11.45077 -11.37555 -11.26492 -11.04347 -10.86763 -10.83065 -10.66943 -10.61326 -10.29759 -10.14923 -9.69714 -9.16774 -9.13557 -8.93999 -8.76770 -8.56622 -8.31401 -8.08304 -5.95877 -3.96862 1.02957 1.18062 3.33260 3.40810 3.44548 3.45384 3.54665 4.45460 4.53399 4.57457 4.61566 4.69483 4.74036 4.77432 4.85106 5.03674 5.15679 5.18332 5.25479 5.25581 5.31328 5.39887 5.40235 5.45171 5.54100 5.55631 5.69451 5.70297 5.75249 5.80584 5.84456 5.88850 5.91181 6.05604 6.08239 6.11336 6.17935 6.31762 6.33250 6.35505 6.48415 6.58391 6.62920 6.76671 6.98968 7.12547 7.19854 7.26176 7.41060 7.68002 7.72811 7.88557 8.04686 8.48598 9.09795 9.66466 11.15650 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.021805 B = 0.002117 C = 0.002030 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1283.809196 B =13222.004897 C =13792.552934 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.094 4.094 3 C -0.112 4.112 4 C -0.145 4.145 5 C 0.090 3.910 6 N -0.504 5.504 7 C 0.061 3.939 8 C -0.112 4.112 9 C -0.152 4.152 10 C 0.091 3.909 11 H 0.085 0.915 12 N -0.686 5.686 13 C 0.067 3.933 14 C -0.085 4.085 15 H 0.065 0.935 16 C -0.133 4.133 17 C 0.028 3.972 18 C -0.511 4.511 19 H 0.057 0.943 20 C 0.054 3.946 21 N -0.897 5.897 22 Si 0.889 3.111 23 H -0.273 1.273 24 H -0.285 1.285 25 H -0.285 1.285 26 C 0.076 3.924 27 C -0.091 4.091 28 C -0.115 4.115 29 H 0.068 0.932 30 H 0.066 0.934 31 H 0.065 0.935 32 H 0.119 0.881 33 H 0.117 0.883 34 H 0.035 0.965 35 H 0.074 0.926 36 H 0.067 0.933 37 H 0.073 0.927 38 H 0.067 0.933 39 H 0.059 0.941 40 H 0.338 0.662 41 H 0.067 0.933 42 H 0.024 0.976 43 H 0.031 0.969 44 H 0.062 0.938 45 H 0.040 0.960 46 H 0.015 0.985 47 H 0.014 0.986 48 H 0.259 0.741 49 H 0.035 0.965 50 H 0.083 0.917 51 H 0.129 0.871 52 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.301 3.194 -17.384 29.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.094 4.094 3 C -0.131 4.131 4 C -0.165 4.165 5 C -0.003 4.003 6 N -0.226 5.226 7 C -0.066 4.066 8 C -0.151 4.151 9 C -0.191 4.191 10 C -0.020 4.020 11 H 0.104 0.896 12 N -0.316 5.316 13 C -0.061 4.061 14 C -0.104 4.104 15 H 0.083 0.917 16 C -0.191 4.191 17 C -0.010 4.010 18 C -0.550 4.550 19 H 0.075 0.925 20 C -0.147 4.147 21 N -0.537 5.537 22 Si 0.718 3.282 23 H -0.198 1.198 24 H -0.211 1.211 25 H -0.211 1.211 26 C -0.051 4.051 27 C -0.110 4.110 28 C -0.134 4.134 29 H 0.087 0.913 30 H 0.085 0.915 31 H 0.084 0.916 32 H 0.137 0.863 33 H 0.135 0.865 34 H 0.054 0.946 35 H 0.092 0.908 36 H 0.086 0.914 37 H 0.092 0.908 38 H 0.086 0.914 39 H 0.078 0.922 40 H 0.157 0.843 41 H 0.086 0.914 42 H 0.042 0.958 43 H 0.049 0.951 44 H 0.081 0.919 45 H 0.059 0.941 46 H 0.034 0.966 47 H 0.032 0.968 48 H 0.068 0.932 49 H 0.053 0.947 50 H 0.101 0.899 51 H 0.147 0.853 52 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -23.315 2.174 -17.001 28.937 hybrid contribution 0.861 1.588 0.346 1.839 sum -22.454 3.762 -16.654 28.208 Atomic orbital electron populations 1.20784 0.91279 1.02774 1.02197 1.19941 0.96057 0.93208 1.00197 1.20885 0.93791 0.97516 1.00901 1.21655 0.94912 0.98272 1.01648 1.18797 0.88630 0.92699 1.00223 1.59486 1.04021 1.55332 1.03719 1.22146 0.95678 0.95493 0.93269 1.21528 0.93849 1.02311 0.97402 1.22360 1.00945 0.99900 0.95923 1.21526 0.93055 0.99816 0.87579 0.89632 1.60521 1.29159 1.10635 1.31311 1.22146 0.87485 0.98979 0.97505 1.21228 0.99725 0.94923 0.94479 0.91660 1.21737 0.98661 0.96784 1.01895 1.19113 0.90560 0.95183 0.96128 1.21280 1.08886 1.22181 1.02631 0.92522 1.25030 0.96789 0.95206 0.97626 1.69976 1.17037 1.28552 1.38092 0.86575 0.78464 0.78644 0.84548 1.19767 1.21094 1.21148 1.22071 0.95002 0.98136 0.89851 1.21066 0.93438 0.97653 0.98863 1.20996 0.93906 0.97544 1.00944 0.91296 0.91520 0.91643 0.86296 0.86451 0.94641 0.90774 0.91439 0.90841 0.91415 0.92234 0.84344 0.91439 0.95755 0.95052 0.91897 0.94064 0.96638 0.96774 0.93175 0.94651 0.89853 0.85279 0.85853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.67 10.01 36.01 0.36 -0.31 16 2 C -0.09 -0.79 5.88 -104.59 -0.62 -1.40 16 3 C -0.11 -0.99 9.69 -39.61 -0.38 -1.37 16 4 C -0.14 -1.43 8.74 -39.38 -0.34 -1.77 16 5 C 0.09 0.96 4.68 -83.79 -0.39 0.57 16 6 N -0.50 -5.51 4.62 -171.15 -0.79 -6.30 16 7 C 0.06 0.58 5.06 -3.83 -0.02 0.56 16 8 C -0.11 -1.07 6.09 -26.65 -0.16 -1.23 16 9 C -0.15 -1.68 5.25 -26.60 -0.14 -1.82 16 10 C 0.09 1.15 2.63 -67.63 -0.18 0.97 16 11 H 0.09 1.19 7.80 -51.93 -0.41 0.78 16 12 N -0.69 -10.03 6.25 -106.64 -0.67 -10.69 16 13 C 0.07 1.17 4.94 -3.82 -0.02 1.15 16 14 C -0.08 -1.73 2.54 -90.62 -0.23 -1.97 16 15 H 0.06 1.41 8.14 -51.93 -0.42 0.98 16 16 C -0.13 -2.49 8.77 37.16 0.33 -2.16 16 17 C 0.03 0.71 4.45 -27.89 -0.12 0.59 16 18 C -0.51 -14.41 8.41 -34.44 -0.29 -14.70 16 19 H 0.06 1.56 7.06 -52.49 -0.37 1.19 16 20 C 0.05 1.56 5.46 -17.82 -0.10 1.46 16 21 N -0.90 -27.14 13.29 55.43 0.74 -26.40 16 22 Si 0.89 21.85 29.54 -169.99 -5.02 16.83 16 23 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 24 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 25 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 26 C 0.08 0.90 4.82 -3.84 -0.02 0.89 16 27 C -0.09 -0.91 9.97 -39.38 -0.39 -1.30 16 28 C -0.12 -1.00 9.69 -39.61 -0.38 -1.38 16 29 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.07 0.34 8.08 -51.93 -0.42 -0.08 16 31 H 0.06 0.34 8.08 -51.93 -0.42 -0.08 16 32 H 0.12 0.83 8.06 -52.49 -0.42 0.41 16 33 H 0.12 1.09 7.13 -52.48 -0.37 0.71 16 34 H 0.04 0.33 7.15 -51.93 -0.37 -0.04 16 35 H 0.07 0.68 8.11 -51.93 -0.42 0.26 16 36 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 37 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.07 0.81 7.52 -51.93 -0.39 0.42 16 39 H 0.06 0.64 8.10 -51.93 -0.42 0.22 16 40 H 0.34 4.71 6.70 -39.29 -0.26 4.44 16 41 H 0.07 1.23 8.06 -51.93 -0.42 0.81 16 42 H 0.02 0.42 7.49 -51.93 -0.39 0.03 16 43 H 0.03 0.49 6.68 -51.93 -0.35 0.14 16 44 H 0.06 1.27 6.95 -51.93 -0.36 0.91 16 45 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 46 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 47 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 48 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 49 H 0.04 0.42 7.79 -51.93 -0.40 0.01 16 50 H 0.08 1.10 8.11 -51.93 -0.42 0.68 16 51 H 0.13 1.21 8.06 -52.49 -0.42 0.79 16 52 H 0.12 0.82 8.06 -52.49 -0.42 0.40 16 LS Contribution 402.40 15.07 6.06 6.06 Total: -1.00 -29.90 402.40 -12.34 -42.24 By element: Atomic # 1 Polarization: 11.03 SS G_CDS: -9.56 Total: 1.47 kcal Atomic # 6 Polarization: -20.11 SS G_CDS: -3.10 Total: -23.22 kcal Atomic # 7 Polarization: -42.67 SS G_CDS: -0.72 Total: -43.39 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -29.90 -12.34 -42.24 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000877066981.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.711 kcal (2) G-P(sol) polarization free energy of solvation -29.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.810 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.341 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.241 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.470 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds