Wall clock time and date at job start Tue Mar 31 2020 10:52:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38279 * 119.92613 * 2 1 4 4 C 1.38112 * 120.07344 * 180.02562 * 3 2 1 5 5 C 1.38907 * 119.92461 * 359.97438 * 4 3 2 6 6 N 1.39677 * 120.07433 * 179.97438 * 5 4 3 7 7 C 1.46854 * 110.99764 * 303.95888 * 6 5 4 8 8 C 1.53037 * 109.51886 * 185.84178 * 7 6 5 9 9 C 1.53126 * 109.27801 * 300.81620 * 8 7 6 10 10 C 1.53124 * 109.15878 * 57.65645 * 9 8 7 11 11 H 1.08999 * 109.50059 * 62.28737 * 10 9 8 12 12 N 1.46892 * 109.50142 * 182.40643 * 10 9 8 13 13 C 1.46905 * 111.00013 * 274.99998 * 12 10 9 14 14 C 1.53002 * 109.47335 * 180.02562 * 13 12 10 15 15 H 1.09000 * 109.47018 * 55.00060 * 14 13 12 16 16 C 1.53000 * 109.46952 * 295.00222 * 14 13 12 17 17 C 1.52994 * 109.47324 * 174.99974 * 14 13 12 18 18 C 1.50702 * 109.47205 * 185.00138 * 17 14 13 19 19 H 1.07998 * 119.99863 * 0.02562 * 18 17 14 20 20 C 1.37874 * 119.99843 * 179.97438 * 18 17 14 21 21 N 1.31519 * 120.00439 * 0.02562 * 20 18 17 22 22 Si 1.86796 * 120.00070 * 179.97438 * 20 18 17 23 23 H 1.48508 * 109.47000 * 0.02562 * 22 20 18 24 24 H 1.48505 * 109.47346 * 119.99939 * 22 20 18 25 25 H 1.48500 * 109.47296 * 240.00262 * 22 20 18 26 26 C 1.46844 * 110.99933 * 68.16522 * 6 5 4 27 27 C 1.38913 * 119.85256 * 0.25668 * 5 4 3 28 28 C 1.38105 * 119.92380 * 359.49218 * 27 5 4 29 29 H 1.09000 * 109.46814 * 89.99963 * 1 2 3 30 30 H 1.08999 * 109.47352 * 210.00217 * 1 2 3 31 31 H 1.08999 * 109.47058 * 330.00362 * 1 2 3 32 32 H 1.08002 * 119.96595 * 0.03722 * 3 2 1 33 33 H 1.08003 * 120.03461 * 179.97438 * 4 3 2 34 34 H 1.08994 * 109.46310 * 65.82404 * 7 6 5 35 35 H 1.09004 * 109.45830 * 305.85091 * 7 6 5 36 36 H 1.09000 * 109.50480 * 180.88135 * 8 7 6 37 37 H 1.08992 * 109.50737 * 60.75564 * 8 7 6 38 38 H 1.08998 * 109.52297 * 177.56592 * 9 8 7 39 39 H 1.08999 * 109.51925 * 297.75795 * 9 8 7 40 40 H 1.00900 * 111.00544 * 38.95263 * 12 10 9 41 41 H 1.08994 * 109.47058 * 300.00407 * 13 12 10 42 42 H 1.09001 * 109.46912 * 60.00207 * 13 12 10 43 43 H 1.09001 * 109.47299 * 59.99994 * 16 14 13 44 44 H 1.09000 * 109.46840 * 179.97438 * 16 14 13 45 45 H 1.09000 * 109.47127 * 299.99772 * 16 14 13 46 46 H 1.09006 * 109.47155 * 305.00207 * 17 14 13 47 47 H 1.09005 * 109.46642 * 65.00003 * 17 14 13 48 48 H 0.96994 * 120.00471 * 179.97438 * 21 20 18 49 49 H 1.09002 * 109.46133 * 294.17868 * 26 6 5 50 50 H 1.09002 * 109.46165 * 54.15507 * 26 6 5 51 51 H 1.07994 * 120.04016 * 179.72185 * 27 5 4 52 52 H 1.07999 * 119.96703 * 180.25583 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1968 1.1984 0.0000 4 6 3.5780 1.2020 -0.0005 5 6 4.2740 -0.0001 -0.0005 6 7 5.6708 -0.0002 -0.0016 7 6 6.1961 0.7651 -1.1395 8 6 7.7190 0.6227 -1.1921 9 6 8.3207 1.1411 0.1170 10 6 7.7209 0.3603 1.2897 11 1 7.9840 -0.6934 1.1978 12 7 8.2498 0.8903 2.5535 13 6 9.5406 0.2720 2.8844 14 6 10.0584 0.8474 4.2042 15 1 9.3026 0.7169 4.9788 16 6 10.3565 2.3378 4.0287 17 6 11.3385 0.1158 4.6123 18 6 11.7807 0.5965 5.9705 19 1 11.2058 1.3484 6.4907 20 6 12.9185 0.0757 6.5493 21 7 13.6183 -0.8403 5.9160 22 14 13.4671 0.6720 8.2323 23 1 12.5152 1.6984 8.7283 24 1 13.4966 -0.4728 9.1778 25 1 14.8250 1.2642 8.1294 26 6 6.1980 0.5102 1.2703 27 6 3.5779 -1.2022 -0.0054 28 6 2.1968 -1.1986 0.0004 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3634 -0.8899 0.5139 31 1 -0.3633 0.8900 0.5138 32 1 1.6551 2.1327 0.0006 33 1 4.1161 2.1384 -0.0010 34 1 5.9335 1.8164 -1.0224 35 1 5.7636 0.3836 -2.0645 36 1 8.1102 1.2035 -2.0275 37 1 7.9820 -0.4269 -1.3230 38 1 9.4016 1.0018 0.1014 39 1 8.0906 2.2006 0.2292 40 1 8.3287 1.8956 2.5192 41 1 9.4124 -0.8058 2.9839 42 1 10.2577 0.4809 2.0905 43 1 9.4445 2.8590 3.7380 44 1 10.7249 2.7478 4.9690 45 1 11.1123 2.4683 3.2541 46 1 11.1475 -0.9567 4.6510 47 1 12.1218 0.3193 3.8820 48 1 14.4190 -1.2064 6.3231 49 1 5.9353 1.5628 1.3761 50 1 5.7669 -0.0564 2.0957 51 1 4.1159 -2.1386 -0.0099 52 1 1.6549 -2.1328 0.0008 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000877066981.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:52:37 Heat of formation + Delta-G solvation = -10.232111 kcal Electronic energy + Delta-G solvation = -26062.431233 eV Core-core repulsion = 22638.619572 eV Total energy + Delta-G solvation = -3423.811661 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.27488 -39.53271 -38.01926 -35.95174 -34.52487 -33.44375 -31.98375 -31.77672 -30.31600 -28.62784 -27.34699 -26.74549 -24.85256 -24.34580 -23.71031 -23.01800 -21.77481 -20.98439 -20.40693 -18.52715 -18.22400 -16.72416 -16.58711 -16.50484 -16.25781 -15.94882 -15.74503 -15.64001 -15.00899 -14.93041 -14.59702 -14.48243 -14.39059 -14.26435 -14.03597 -13.97574 -13.56644 -13.42814 -13.27142 -13.02533 -12.77962 -12.69457 -12.56807 -12.41148 -12.33846 -12.20887 -12.02268 -11.96982 -11.86196 -11.71179 -11.52022 -11.43194 -11.06193 -10.89076 -10.53871 -9.86079 -9.55766 -9.31070 -9.28111 -8.17343 -6.26381 0.33115 0.48607 1.39712 1.40316 1.53341 2.41858 2.63418 2.80342 3.15955 3.40389 3.78913 3.81109 3.96559 3.98821 4.05566 4.10465 4.16599 4.27558 4.31791 4.36770 4.44226 4.47571 4.49874 4.54958 4.57341 4.66178 4.75170 4.81293 4.86235 4.87132 4.87944 4.91177 4.93570 5.03114 5.05178 5.14820 5.17183 5.22028 5.26854 5.30576 5.39317 5.42696 5.48901 5.56136 5.59797 5.70554 5.80620 5.89142 5.91068 5.96783 6.13123 6.31714 6.48458 6.52041 6.89855 7.41784 8.94890 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.021805 B = 0.002117 C = 0.002030 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1283.809196 B =13222.004897 C =13792.552934 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.097 4.097 3 C -0.119 4.119 4 C -0.152 4.152 5 C 0.071 3.929 6 N -0.510 5.510 7 C 0.063 3.937 8 C -0.107 4.107 9 C -0.146 4.146 10 C 0.094 3.906 11 H 0.069 0.931 12 N -0.685 5.685 13 C 0.083 3.917 14 C -0.076 4.076 15 H 0.055 0.945 16 C -0.125 4.125 17 C 0.033 3.967 18 C -0.527 4.527 19 H 0.061 0.939 20 C -0.005 4.005 21 N -0.935 5.935 22 Si 0.962 3.038 23 H -0.262 1.262 24 H -0.280 1.280 25 H -0.279 1.279 26 C 0.087 3.913 27 C -0.106 4.106 28 C -0.120 4.120 29 H 0.079 0.921 30 H 0.074 0.926 31 H 0.073 0.927 32 H 0.137 0.863 33 H 0.121 0.879 34 H 0.041 0.959 35 H 0.080 0.920 36 H 0.086 0.914 37 H 0.065 0.935 38 H 0.058 0.942 39 H 0.068 0.932 40 H 0.345 0.655 41 H 0.053 0.947 42 H 0.026 0.974 43 H 0.066 0.934 44 H 0.045 0.955 45 H 0.041 0.959 46 H -0.015 1.015 47 H -0.010 1.010 48 H 0.262 0.738 49 H 0.038 0.962 50 H 0.065 0.935 51 H 0.127 0.873 52 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.088 4.759 -17.755 31.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.097 4.097 3 C -0.137 4.137 4 C -0.172 4.172 5 C -0.023 4.023 6 N -0.232 5.232 7 C -0.063 4.063 8 C -0.146 4.146 9 C -0.185 4.185 10 C -0.016 4.016 11 H 0.087 0.913 12 N -0.316 5.316 13 C -0.046 4.046 14 C -0.095 4.095 15 H 0.074 0.926 16 C -0.183 4.183 17 C -0.005 4.005 18 C -0.565 4.565 19 H 0.079 0.921 20 C -0.202 4.202 21 N -0.576 5.576 22 Si 0.787 3.213 23 H -0.186 1.186 24 H -0.206 1.206 25 H -0.205 1.205 26 C -0.040 4.040 27 C -0.125 4.125 28 C -0.138 4.138 29 H 0.098 0.902 30 H 0.093 0.907 31 H 0.091 0.909 32 H 0.155 0.845 33 H 0.139 0.861 34 H 0.060 0.940 35 H 0.098 0.902 36 H 0.104 0.896 37 H 0.084 0.916 38 H 0.077 0.923 39 H 0.087 0.913 40 H 0.165 0.835 41 H 0.072 0.928 42 H 0.044 0.956 43 H 0.085 0.915 44 H 0.064 0.936 45 H 0.060 0.940 46 H 0.004 0.996 47 H 0.009 0.991 48 H 0.070 0.930 49 H 0.057 0.943 50 H 0.084 0.916 51 H 0.145 0.855 52 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -25.124 3.750 -17.384 30.782 hybrid contribution 1.346 1.054 0.417 1.760 sum -23.778 4.804 -16.967 29.603 Atomic orbital electron populations 1.20831 0.89365 1.03598 1.03098 1.20295 0.97541 0.92885 0.99019 1.21163 0.93566 0.98581 1.00422 1.21740 0.95533 0.98036 1.01923 1.18914 0.88425 0.93349 1.01588 1.59446 1.04578 1.55663 1.03478 1.22166 0.95517 0.95692 0.92974 1.21505 0.93816 1.02112 0.97138 1.22280 1.00272 1.00127 0.95859 1.21485 0.93698 0.99078 0.87348 0.91261 1.60417 1.27274 1.11000 1.32950 1.21805 0.88830 0.98119 0.95889 1.21023 0.96772 0.95953 0.95731 0.92643 1.21639 1.00319 0.95225 1.01087 1.19004 0.92469 0.93961 0.95045 1.21672 1.09096 1.22167 1.03599 0.92076 1.25973 0.96965 0.95319 1.01908 1.70109 1.17609 1.29841 1.40074 0.85441 0.78203 0.78337 0.79327 1.18568 1.20630 1.20473 1.21860 0.94040 0.97965 0.90127 1.21197 0.94251 0.97495 0.99512 1.21253 0.93504 0.98677 1.00386 0.90247 0.90721 0.90854 0.84531 0.86130 0.94045 0.90200 0.89559 0.91585 0.92283 0.91285 0.83507 0.92846 0.95611 0.91549 0.93624 0.93984 0.99647 0.99115 0.92966 0.94329 0.91635 0.85520 0.84054 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.05 10.01 71.24 0.71 -0.33 16 2 C -0.10 -1.46 5.88 -19.84 -0.12 -1.58 16 3 C -0.12 -1.90 9.69 22.25 0.22 -1.68 16 4 C -0.15 -2.83 8.74 22.40 0.20 -2.63 16 5 C 0.07 1.47 4.68 38.21 0.18 1.65 16 6 N -0.51 -10.90 4.62 -695.39 -3.21 -14.12 16 7 C 0.06 1.12 5.06 86.32 0.44 1.56 16 8 C -0.11 -1.89 6.09 30.65 0.19 -1.71 16 9 C -0.15 -3.04 5.25 30.68 0.16 -2.88 16 10 C 0.09 2.35 2.63 44.97 0.12 2.47 16 11 H 0.07 1.97 7.80 -2.39 -0.02 1.95 16 12 N -0.68 -19.62 6.25 -491.30 -3.07 -22.69 16 13 C 0.08 2.90 4.94 86.30 0.43 3.33 16 14 C -0.08 -3.14 2.54 -10.79 -0.03 -3.17 16 15 H 0.06 2.40 8.14 -2.39 -0.02 2.38 16 16 C -0.13 -4.56 8.77 71.98 0.63 -3.93 16 17 C 0.03 1.75 4.45 29.85 0.13 1.88 16 18 C -0.53 -30.19 8.41 25.60 0.22 -29.98 16 19 H 0.06 3.37 7.06 -2.91 -0.02 3.35 16 20 C 0.00 -0.27 5.46 84.65 0.46 0.19 16 21 N -0.94 -57.84 13.29 21.45 0.28 -57.55 16 22 Si 0.96 45.03 29.54 68.60 2.03 47.05 16 23 H -0.26 -11.67 7.11 99.48 0.71 -10.96 16 24 H -0.28 -12.86 7.11 99.48 0.71 -12.16 16 25 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 26 C 0.09 2.04 4.82 86.33 0.42 2.45 16 27 C -0.11 -2.07 9.97 22.40 0.22 -1.85 16 28 C -0.12 -1.93 9.69 22.25 0.22 -1.72 16 29 H 0.08 0.60 8.14 -2.39 -0.02 0.58 16 30 H 0.07 0.59 8.08 -2.39 -0.02 0.57 16 31 H 0.07 0.58 8.08 -2.39 -0.02 0.56 16 32 H 0.14 1.61 8.06 -2.91 -0.02 1.59 16 33 H 0.12 2.08 7.13 -2.91 -0.02 2.06 16 34 H 0.04 0.70 7.15 -2.39 -0.02 0.68 16 35 H 0.08 1.35 8.11 -2.39 -0.02 1.33 16 36 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 37 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 38 H 0.06 1.35 7.52 -2.39 -0.02 1.33 16 39 H 0.07 1.33 8.10 -2.39 -0.02 1.31 16 40 H 0.35 9.01 6.70 -89.69 -0.60 8.41 16 41 H 0.05 2.01 8.06 -2.39 -0.02 1.99 16 42 H 0.03 0.90 7.49 -2.39 -0.02 0.88 16 43 H 0.07 1.94 6.68 -2.39 -0.02 1.92 16 44 H 0.04 1.81 6.95 -2.39 -0.02 1.79 16 45 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 46 H -0.01 -0.87 8.14 -2.38 -0.02 -0.89 16 47 H -0.01 -0.55 8.14 -2.38 -0.02 -0.57 16 48 H 0.26 15.18 8.31 -92.71 -0.77 14.41 16 49 H 0.04 0.87 7.79 -2.39 -0.02 0.85 16 50 H 0.07 1.76 8.11 -2.39 -0.02 1.74 16 51 H 0.13 2.42 8.06 -2.91 -0.02 2.40 16 52 H 0.14 1.66 8.06 -2.91 -0.02 1.64 16 Total: -1.00 -65.21 402.40 1.08 -64.14 By element: Atomic # 1 Polarization: 20.82 SS G_CDS: 0.26 Total: 21.08 kcal Atomic # 6 Polarization: -42.70 SS G_CDS: 4.79 Total: -37.91 kcal Atomic # 7 Polarization: -88.36 SS G_CDS: -6.00 Total: -94.36 kcal Atomic # 14 Polarization: 45.03 SS G_CDS: 2.03 Total: 47.05 kcal Total: -65.21 1.08 -64.14 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000877066981.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.906 kcal (2) G-P(sol) polarization free energy of solvation -65.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.138 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds