Wall clock time and date at job start Tue Mar 31 2020 10:52:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38283 * 119.92660 * 2 1 4 4 C 1.38103 * 120.07364 * 179.72415 * 3 2 1 5 5 C 1.38904 * 119.92494 * 0.55370 * 4 3 2 6 6 N 1.39677 * 120.07537 * 179.70756 * 5 4 3 7 7 C 1.46850 * 110.99640 * 236.06681 * 6 5 4 8 8 C 1.53040 * 109.52331 * 174.15840 * 7 6 5 9 9 C 1.53117 * 109.27847 * 59.17463 * 8 7 6 10 10 C 1.53121 * 109.16294 * 302.34731 * 9 8 7 11 11 H 1.09000 * 109.50101 * 297.67349 * 10 9 8 12 12 N 1.46897 * 109.50395 * 177.59604 * 10 9 8 13 13 C 1.46905 * 111.00173 * 85.00259 * 12 10 9 14 14 C 1.52994 * 109.47196 * 179.97438 * 13 12 10 15 15 H 1.09004 * 109.47306 * 304.99626 * 14 13 12 16 16 C 1.53004 * 109.47214 * 64.99707 * 14 13 12 17 17 C 1.53002 * 109.46889 * 184.99719 * 14 13 12 18 18 C 1.50707 * 109.46911 * 174.99733 * 17 14 13 19 19 H 1.07998 * 119.99872 * 0.02562 * 18 17 14 20 20 C 1.37876 * 120.00056 * 179.97438 * 18 17 14 21 21 N 1.31513 * 119.99797 * 359.97438 * 20 18 17 22 22 Si 1.86796 * 120.00237 * 180.02562 * 20 18 17 23 23 H 1.48503 * 109.47292 * 59.99441 * 22 20 18 24 24 H 1.48501 * 109.47237 * 180.02562 * 22 20 18 25 25 H 1.48505 * 109.46813 * 300.00023 * 22 20 18 26 26 C 1.46837 * 111.00465 * 111.85122 * 6 5 4 27 27 C 1.38915 * 119.85383 * 359.71814 * 5 4 3 28 28 C 1.38107 * 119.91797 * 0.02562 * 27 5 4 29 29 H 1.09002 * 109.47152 * 269.72494 * 1 2 3 30 30 H 1.09001 * 109.46980 * 149.72595 * 1 2 3 31 31 H 1.09004 * 109.47113 * 29.72575 * 1 2 3 32 32 H 1.08002 * 119.96199 * 359.97438 * 3 2 1 33 33 H 1.08004 * 120.03722 * 180.27114 * 4 3 2 34 34 H 1.09005 * 109.46008 * 294.16841 * 7 6 5 35 35 H 1.08996 * 109.46750 * 54.14212 * 7 6 5 36 36 H 1.08991 * 109.50418 * 179.11734 * 8 7 6 37 37 H 1.09004 * 109.49992 * 299.19516 * 8 7 6 38 38 H 1.09001 * 109.52537 * 62.25268 * 9 8 7 39 39 H 1.09000 * 109.52452 * 182.37865 * 9 8 7 40 40 H 1.00900 * 110.99508 * 208.94902 * 12 10 9 41 41 H 1.09000 * 109.46813 * 299.99876 * 13 12 10 42 42 H 1.09001 * 109.47017 * 59.99307 * 13 12 10 43 43 H 1.08999 * 109.46828 * 179.97438 * 16 14 13 44 44 H 1.08999 * 109.47214 * 299.99771 * 16 14 13 45 45 H 1.08995 * 109.47116 * 59.99999 * 16 14 13 46 46 H 1.09000 * 109.47295 * 294.99580 * 17 14 13 47 47 H 1.08994 * 109.47296 * 54.99996 * 17 14 13 48 48 H 0.97001 * 120.00216 * 179.97438 * 21 20 18 49 49 H 1.09001 * 109.46640 * 305.85340 * 26 6 5 50 50 H 1.08999 * 109.46190 * 65.82280 * 26 6 5 51 51 H 1.07996 * 120.03965 * 180.02562 * 27 5 4 52 52 H 1.08002 * 119.95576 * 180.02562 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1969 1.1985 0.0000 4 6 3.5779 1.2020 0.0058 5 6 4.2740 0.0000 -0.0001 6 7 5.6708 -0.0001 -0.0005 7 6 6.1966 -0.7601 -1.1417 8 6 7.7195 -0.6176 -1.1930 9 6 8.3206 -1.1420 0.1140 10 6 7.7203 -0.3666 1.2900 11 1 7.9842 0.6875 1.2035 12 7 8.2487 -0.9024 2.5516 13 6 9.5394 -0.2856 2.8860 14 6 10.0565 -0.8671 4.2033 15 1 9.3004 -0.7400 4.9782 16 6 10.3547 -2.3567 4.0211 17 6 11.3366 -0.1373 4.6152 18 6 11.7781 -0.6242 5.9714 19 1 11.2035 -1.3790 6.4875 20 6 12.9163 -0.1069 6.5527 21 7 13.6169 0.8111 5.9234 22 14 13.4641 -0.7110 8.2333 23 1 13.7238 -2.1719 8.1737 24 1 14.7065 -0.0026 8.6332 25 1 12.3968 -0.4382 9.2292 26 6 6.1974 -0.5163 1.2693 27 6 3.5779 -1.2022 -0.0058 28 6 2.1968 -1.1985 -0.0061 29 1 -0.3633 -0.0049 1.0277 30 1 -0.3633 -0.8875 -0.5181 31 1 -0.3633 0.8925 -0.5096 32 1 1.6551 2.1327 -0.0004 33 1 4.1161 2.1384 0.0102 34 1 5.9339 -1.8120 -1.0295 35 1 5.7645 -0.3744 -2.0650 36 1 8.1110 -1.1945 -2.0308 37 1 7.9827 0.4326 -1.3197 38 1 8.0905 -2.2020 0.2213 39 1 9.4017 -1.0036 0.0991 40 1 7.5851 -0.7814 3.3019 41 1 10.2568 -0.4908 2.0914 42 1 9.4111 0.7918 2.9903 43 1 10.7235 -2.7707 4.9595 44 1 9.4428 -2.8766 3.7276 45 1 11.1108 -2.4837 3.2463 46 1 12.1202 -0.3375 3.8845 47 1 11.1456 0.9349 4.6587 48 1 14.4175 1.1754 6.3325 49 1 5.7659 0.0465 2.0971 50 1 5.9347 -1.5693 1.3702 51 1 4.1161 -2.1385 -0.0099 52 1 1.6550 -2.1327 -0.0101 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000877066982.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:52:40 Heat of formation + Delta-G solvation = -9.815899 kcal Electronic energy + Delta-G solvation = -26057.046151 eV Core-core repulsion = 22633.252538 eV Total energy + Delta-G solvation = -3423.793613 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.28100 -39.47506 -37.96960 -35.91433 -34.53351 -33.54422 -32.00409 -31.78696 -30.32804 -28.63416 -27.37927 -26.59425 -24.94159 -24.27508 -23.76361 -23.08193 -21.63824 -20.93025 -20.38398 -18.48835 -18.18579 -16.66603 -16.56989 -16.44536 -16.28734 -16.22896 -15.72430 -15.54771 -15.36734 -14.71828 -14.63206 -14.52902 -14.37442 -14.25630 -14.06710 -13.92747 -13.46264 -13.36250 -13.18142 -13.02411 -12.75677 -12.74010 -12.57798 -12.38954 -12.33901 -12.20496 -12.05242 -12.02500 -11.76489 -11.66494 -11.43145 -11.36191 -11.07304 -10.88016 -10.52749 -9.87487 -9.56897 -9.38009 -9.30994 -8.16965 -6.26263 0.31341 0.47233 1.40076 1.43044 1.50707 2.42045 2.62510 2.78121 3.16096 3.35020 3.71614 3.90020 3.96160 4.03279 4.04647 4.09924 4.13900 4.26023 4.34279 4.34893 4.44209 4.49383 4.51184 4.54607 4.61132 4.70567 4.76298 4.85573 4.86331 4.88269 4.89309 4.94297 4.98596 5.03191 5.09088 5.14053 5.19973 5.22621 5.30563 5.39264 5.41512 5.46686 5.51227 5.56547 5.58853 5.69540 5.80743 5.85665 5.89106 5.94706 6.10800 6.31462 6.45021 6.49494 6.89470 7.41766 8.94854 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.021851 B = 0.002118 C = 0.002030 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1281.097785 B =13218.950425 C =13792.809418 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.096 4.096 3 C -0.120 4.120 4 C -0.105 4.105 5 C 0.069 3.931 6 N -0.508 5.508 7 C 0.063 3.937 8 C -0.111 4.111 9 C -0.105 4.105 10 C 0.094 3.906 11 H 0.037 0.963 12 N -0.677 5.677 13 C 0.082 3.918 14 C -0.074 4.074 15 H 0.054 0.946 16 C -0.112 4.112 17 C 0.033 3.967 18 C -0.529 4.529 19 H 0.061 0.939 20 C -0.004 4.004 21 N -0.935 5.935 22 Si 0.962 3.038 23 H -0.267 1.267 24 H -0.285 1.285 25 H -0.267 1.267 26 C 0.074 3.926 27 C -0.151 4.151 28 C -0.118 4.118 29 H 0.076 0.924 30 H 0.074 0.926 31 H 0.076 0.924 32 H 0.142 0.858 33 H 0.127 0.873 34 H 0.042 0.958 35 H 0.080 0.920 36 H 0.087 0.913 37 H 0.064 0.936 38 H 0.065 0.935 39 H 0.054 0.946 40 H 0.342 0.658 41 H 0.061 0.939 42 H 0.015 0.985 43 H 0.037 0.963 44 H 0.067 0.933 45 H 0.034 0.966 46 H -0.011 1.011 47 H -0.015 1.015 48 H 0.262 0.738 49 H 0.068 0.932 50 H 0.046 0.954 51 H 0.121 0.879 52 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.260 -3.325 -16.747 31.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.096 4.096 3 C -0.138 4.138 4 C -0.124 4.124 5 C -0.024 4.024 6 N -0.230 5.230 7 C -0.063 4.063 8 C -0.149 4.149 9 C -0.144 4.144 10 C -0.016 4.016 11 H 0.055 0.945 12 N -0.308 5.308 13 C -0.047 4.047 14 C -0.093 4.093 15 H 0.072 0.928 16 C -0.169 4.169 17 C -0.005 4.005 18 C -0.567 4.567 19 H 0.080 0.920 20 C -0.201 4.201 21 N -0.576 5.576 22 Si 0.787 3.213 23 H -0.192 1.192 24 H -0.210 1.210 25 H -0.192 1.192 26 C -0.053 4.053 27 C -0.171 4.171 28 C -0.137 4.137 29 H 0.095 0.905 30 H 0.093 0.907 31 H 0.094 0.906 32 H 0.160 0.840 33 H 0.145 0.855 34 H 0.060 0.940 35 H 0.099 0.901 36 H 0.106 0.894 37 H 0.083 0.917 38 H 0.084 0.916 39 H 0.072 0.928 40 H 0.161 0.839 41 H 0.079 0.921 42 H 0.033 0.967 43 H 0.056 0.944 44 H 0.086 0.914 45 H 0.053 0.947 46 H 0.008 0.992 47 H 0.003 0.997 48 H 0.070 0.930 49 H 0.087 0.913 50 H 0.064 0.936 51 H 0.139 0.861 52 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -25.642 -3.294 -17.083 30.987 hybrid contribution 0.524 0.209 1.311 1.427 sum -25.118 -3.085 -15.772 29.819 Atomic orbital electron populations 1.20837 0.89371 1.03706 1.03019 1.20295 0.97537 0.92880 0.98925 1.21250 0.93496 0.98673 1.00381 1.21185 0.94237 0.97443 0.99517 1.18911 0.88346 0.93352 1.01803 1.59463 1.04628 1.55629 1.03274 1.22168 0.95549 0.95764 0.92809 1.21569 0.93845 1.02037 0.97440 1.21546 0.99628 0.99834 0.93367 1.21467 0.93062 0.96617 0.90502 0.94495 1.60523 1.04841 1.60317 1.05154 1.21851 0.91134 0.94654 0.97100 1.21014 0.96854 0.96365 0.95021 0.92785 1.21471 1.00409 0.95061 0.99948 1.19008 0.92624 0.93830 0.95038 1.21610 1.09265 1.22100 1.03750 0.92049 1.25979 0.96903 0.95325 1.01941 1.70099 1.17546 1.29763 1.40190 0.85545 0.77586 0.78671 0.79514 1.19216 1.21042 1.19240 1.22082 0.93781 0.98505 0.90946 1.21745 0.95531 0.98046 1.01827 1.21166 0.93563 0.98593 1.00382 0.90545 0.90701 0.90554 0.84037 0.85516 0.94012 0.90138 0.89407 0.91699 0.91586 0.92754 0.83944 0.92053 0.96697 0.94380 0.91436 0.94692 0.99220 0.99709 0.92962 0.91348 0.93560 0.86147 0.84543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.99 10.01 71.24 0.71 -0.28 16 2 C -0.10 -1.38 5.88 -19.84 -0.12 -1.50 16 3 C -0.12 -1.84 9.69 22.25 0.22 -1.62 16 4 C -0.10 -1.97 9.97 22.40 0.22 -1.74 16 5 C 0.07 1.39 4.68 38.21 0.18 1.57 16 6 N -0.51 -10.62 4.62 -695.40 -3.21 -13.83 16 7 C 0.06 1.15 5.06 86.33 0.44 1.59 16 8 C -0.11 -2.05 6.09 30.65 0.19 -1.87 16 9 C -0.11 -2.41 5.49 30.67 0.17 -2.25 16 10 C 0.09 2.34 2.66 44.97 0.12 2.46 16 11 H 0.04 1.05 7.80 -2.39 -0.02 1.03 16 12 N -0.68 -19.19 5.76 -491.30 -2.83 -22.02 16 13 C 0.08 2.89 4.87 86.30 0.42 3.31 16 14 C -0.07 -3.05 2.48 -10.79 -0.03 -3.08 16 15 H 0.05 2.23 8.14 -2.38 -0.02 2.21 16 16 C -0.11 -4.31 8.89 71.98 0.64 -3.67 16 17 C 0.03 1.75 4.45 29.85 0.13 1.88 16 18 C -0.53 -30.32 8.41 25.60 0.22 -30.11 16 19 H 0.06 3.37 7.06 -2.91 -0.02 3.35 16 20 C 0.00 -0.25 5.46 84.65 0.46 0.21 16 21 N -0.94 -57.92 13.29 21.45 0.28 -57.64 16 22 Si 0.96 44.98 29.54 68.60 2.03 47.01 16 23 H -0.27 -11.99 7.11 99.48 0.71 -11.29 16 24 H -0.28 -13.07 7.11 99.48 0.71 -12.37 16 25 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 26 C 0.07 1.64 4.49 86.33 0.39 2.02 16 27 C -0.15 -2.73 8.74 22.40 0.20 -2.54 16 28 C -0.12 -1.83 9.69 22.25 0.22 -1.61 16 29 H 0.08 0.61 8.14 -2.39 -0.02 0.59 16 30 H 0.07 0.53 8.08 -2.39 -0.02 0.51 16 31 H 0.08 0.53 8.08 -2.38 -0.02 0.51 16 32 H 0.14 1.56 8.06 -2.91 -0.02 1.54 16 33 H 0.13 2.31 8.06 -2.91 -0.02 2.29 16 34 H 0.04 0.73 7.15 -2.38 -0.02 0.72 16 35 H 0.08 1.37 8.11 -2.39 -0.02 1.35 16 36 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 37 H 0.06 1.30 8.14 -2.38 -0.02 1.28 16 38 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 39 H 0.05 1.38 7.53 -2.39 -0.02 1.36 16 40 H 0.34 9.17 8.36 -89.69 -0.75 8.42 16 41 H 0.06 2.23 7.49 -2.39 -0.02 2.21 16 42 H 0.01 0.55 8.06 -2.39 -0.02 0.53 16 43 H 0.04 1.56 6.95 -2.39 -0.02 1.55 16 44 H 0.07 2.25 7.75 -2.39 -0.02 2.24 16 45 H 0.03 1.35 8.14 -2.39 -0.02 1.33 16 46 H -0.01 -0.62 8.14 -2.39 -0.02 -0.64 16 47 H -0.02 -0.90 8.14 -2.39 -0.02 -0.92 16 48 H 0.26 15.29 8.31 -92.71 -0.77 14.52 16 49 H 0.07 1.57 8.10 -2.39 -0.02 1.55 16 50 H 0.05 1.02 7.79 -2.39 -0.02 1.00 16 51 H 0.12 2.06 7.13 -2.91 -0.02 2.03 16 52 H 0.14 1.56 8.06 -2.91 -0.02 1.54 16 Total: -1.00 -64.90 404.58 1.15 -63.75 By element: Atomic # 1 Polarization: 19.85 SS G_CDS: 0.11 Total: 19.97 kcal Atomic # 6 Polarization: -42.00 SS G_CDS: 4.77 Total: -37.23 kcal Atomic # 7 Polarization: -87.73 SS G_CDS: -5.76 Total: -93.49 kcal Atomic # 14 Polarization: 44.98 SS G_CDS: 2.03 Total: 47.01 kcal Total: -64.90 1.15 -63.75 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000877066982.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.936 kcal (2) G-P(sol) polarization free energy of solvation -64.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.962 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.752 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds