Wall clock time and date at job start Tue Mar 31 2020 10:52:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38290 * 119.92525 * 2 1 4 4 C 1.38105 * 120.07286 * 180.02562 * 3 2 1 5 5 C 1.38911 * 119.92587 * 359.97438 * 4 3 2 6 6 N 1.39675 * 120.07717 * 179.97438 * 5 4 3 7 7 C 1.46848 * 110.99704 * 303.95569 * 6 5 4 8 8 C 1.53037 * 109.52381 * 174.15561 * 7 6 5 9 9 C 1.53123 * 109.27398 * 59.18254 * 8 7 6 10 10 C 1.53120 * 109.21163 * 302.31409 * 9 8 7 11 11 H 1.08997 * 109.50353 * 297.74224 * 10 9 8 12 12 N 1.46898 * 109.50209 * 177.62873 * 10 9 8 13 13 C 1.46901 * 111.00228 * 85.00064 * 12 10 9 14 14 C 1.53002 * 109.47100 * 180.02562 * 13 12 10 15 15 H 1.09002 * 109.47162 * 54.99662 * 14 13 12 16 16 C 1.52996 * 109.47063 * 294.99446 * 14 13 12 17 17 C 1.53006 * 109.46919 * 174.99817 * 14 13 12 18 18 C 1.50701 * 109.46817 * 184.99513 * 17 14 13 19 19 H 1.08004 * 120.00162 * 0.02562 * 18 17 14 20 20 C 1.37878 * 119.99803 * 179.97438 * 18 17 14 21 21 N 1.31515 * 120.00071 * 0.02562 * 20 18 17 22 22 Si 1.86804 * 120.00121 * 180.02562 * 20 18 17 23 23 H 1.48495 * 109.47060 * 90.00059 * 22 20 18 24 24 H 1.48502 * 109.46938 * 210.00617 * 22 20 18 25 25 H 1.48497 * 109.46824 * 330.00073 * 22 20 18 26 26 C 1.46845 * 111.00222 * 179.75007 * 6 5 4 27 27 C 1.38915 * 119.84875 * 0.26280 * 5 4 3 28 28 C 1.38101 * 119.92439 * 359.48436 * 27 5 4 29 29 H 1.08998 * 109.47780 * 89.99389 * 1 2 3 30 30 H 1.08997 * 109.47390 * 210.00072 * 1 2 3 31 31 H 1.09005 * 109.46961 * 329.99650 * 1 2 3 32 32 H 1.07992 * 119.96150 * 0.02562 * 3 2 1 33 33 H 1.08004 * 120.03699 * 179.97438 * 4 3 2 34 34 H 1.09006 * 109.46097 * 54.14359 * 7 6 5 35 35 H 1.08996 * 109.46972 * 294.17670 * 7 6 5 36 36 H 1.08996 * 109.50616 * 299.24564 * 8 7 6 37 37 H 1.08993 * 109.53667 * 179.13827 * 8 7 6 38 38 H 1.09002 * 109.52319 * 62.25202 * 9 8 7 39 39 H 1.08995 * 109.52318 * 182.37884 * 9 8 7 40 40 H 1.00897 * 111.00285 * 208.95468 * 12 10 9 41 41 H 1.09004 * 109.46961 * 299.99341 * 13 12 10 42 42 H 1.08999 * 109.47265 * 59.99958 * 13 12 10 43 43 H 1.08997 * 109.47512 * 179.97438 * 16 14 13 44 44 H 1.08995 * 109.47771 * 300.00608 * 16 14 13 45 45 H 1.09006 * 109.47050 * 60.00338 * 16 14 13 46 46 H 1.08996 * 109.46970 * 305.00040 * 17 14 13 47 47 H 1.08997 * 109.47030 * 64.99808 * 17 14 13 48 48 H 0.97002 * 120.00207 * 179.97438 * 21 20 18 49 49 H 1.09003 * 109.45905 * 305.85722 * 26 6 5 50 50 H 1.09002 * 109.46112 * 65.81919 * 26 6 5 51 51 H 1.07996 * 120.03642 * 179.72284 * 27 5 4 52 52 H 1.08000 * 119.96000 * 180.25242 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1969 1.1985 0.0000 4 6 3.5779 1.2021 -0.0005 5 6 4.2740 0.0000 -0.0005 6 7 5.6708 -0.0001 -0.0016 7 6 6.1961 0.7651 -1.1395 8 6 7.7191 0.8664 -1.0283 9 6 8.3197 -0.5420 -1.0155 10 6 7.7213 -1.3344 0.1501 11 1 7.9853 -0.8524 1.0914 12 7 8.2505 -2.7047 0.1346 13 6 9.5421 -2.7781 0.8306 14 6 10.0606 -4.2171 0.7930 15 1 10.1036 -4.5609 -0.2405 16 6 9.1184 -5.1198 1.5920 17 6 11.4609 -4.2708 1.4072 18 6 12.0210 -5.6621 1.2596 19 1 11.4369 -6.4309 0.7758 20 6 13.2797 -5.9531 1.7413 21 7 13.9913 -5.0168 2.3300 22 14 13.9744 -7.6775 1.5578 23 1 14.7134 -7.7793 0.2738 24 1 14.8987 -7.9612 2.6850 25 1 12.8632 -8.6625 1.5689 26 6 6.1970 -1.3710 0.0046 27 6 3.5778 -1.2021 -0.0055 28 6 2.1968 -1.1985 0.0003 29 1 -0.3634 0.0001 -1.0276 30 1 -0.3634 -0.8899 0.5138 31 1 -0.3633 0.8900 0.5139 32 1 1.6551 2.1327 0.0004 33 1 4.1161 2.1385 -0.0010 34 1 5.7643 1.7660 -1.1346 35 1 5.9326 0.2607 -2.0692 36 1 7.9830 1.3829 -0.1056 37 1 8.1107 1.4212 -1.8808 38 1 8.0889 -1.0451 -1.9545 39 1 9.4008 -0.4759 -0.8939 40 1 7.5878 -3.3528 0.5328 41 1 10.2585 -2.1212 0.3374 42 1 9.4148 -2.4644 1.8667 43 1 9.4874 -6.1450 1.5648 44 1 9.0752 -4.7760 2.6254 45 1 8.1207 -5.0815 1.1544 46 1 12.1101 -3.5614 0.8941 47 1 11.4041 -4.0123 2.4645 48 1 14.8766 -5.2216 2.6693 49 1 5.7657 -1.9218 0.8405 50 1 5.9334 -1.8654 -0.9304 51 1 4.1159 -2.1385 -0.0101 52 1 1.6550 -2.1327 0.0006 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000877066983.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:52:43 Heat of formation + Delta-G solvation = 7.709576 kcal Electronic energy + Delta-G solvation = -26095.237333 eV Core-core repulsion = 22672.203681 eV Total energy + Delta-G solvation = -3423.033651 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.65604 -38.58475 -36.71570 -34.62510 -33.24287 -32.03608 -31.47340 -30.94727 -29.09205 -26.81622 -26.65326 -25.34429 -24.26230 -23.45111 -22.20796 -21.78095 -20.81648 -19.83889 -18.88394 -17.65725 -16.45468 -15.96956 -15.54203 -15.41033 -15.12860 -14.74425 -14.63574 -14.39936 -14.28562 -13.93173 -13.73621 -13.62543 -13.58290 -13.14934 -12.79990 -12.54464 -12.40966 -12.28599 -12.10997 -11.97236 -11.64787 -11.49059 -11.38821 -11.19844 -10.97898 -10.88487 -10.80632 -10.62423 -10.54307 -10.32187 -10.14489 -9.74706 -9.69395 -9.17093 -9.14097 -8.94883 -8.31908 -8.17494 -7.94242 -5.96523 -3.97646 1.12374 1.17675 3.30978 3.33768 3.39983 3.43128 3.60280 4.36167 4.48786 4.53871 4.60569 4.65819 4.75732 4.78102 4.82455 5.00280 5.07052 5.15732 5.16649 5.28493 5.31060 5.35872 5.39186 5.43394 5.49703 5.57045 5.63450 5.64928 5.73511 5.79392 5.81369 5.88164 5.91200 6.05657 6.06773 6.10291 6.13997 6.27232 6.31690 6.39468 6.47999 6.57103 6.57548 6.76639 6.96734 7.09017 7.11867 7.18135 7.37733 7.63792 7.71214 7.87275 8.03761 8.47519 9.08686 9.65625 11.14933 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.025147 B = 0.002118 C = 0.001992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1113.204002 B =13216.860962 C =14054.954792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.119 4.119 3 C -0.096 4.096 4 C -0.138 4.138 5 C 0.112 3.888 6 N -0.487 5.487 7 C 0.060 3.940 8 C -0.119 4.119 9 C -0.111 4.111 10 C 0.089 3.911 11 H 0.051 0.949 12 N -0.685 5.685 13 C 0.067 3.933 14 C -0.084 4.084 15 H 0.065 0.935 16 C -0.134 4.134 17 C 0.028 3.972 18 C -0.512 4.512 19 H 0.056 0.944 20 C 0.054 3.946 21 N -0.897 5.897 22 Si 0.890 3.110 23 H -0.281 1.281 24 H -0.287 1.287 25 H -0.274 1.274 26 C 0.052 3.948 27 C -0.168 4.168 28 C -0.093 4.093 29 H 0.066 0.934 30 H 0.063 0.937 31 H 0.063 0.937 32 H 0.121 0.879 33 H 0.124 0.876 34 H 0.079 0.921 35 H 0.044 0.956 36 H 0.071 0.929 37 H 0.073 0.927 38 H 0.067 0.933 39 H 0.069 0.931 40 H 0.337 0.663 41 H 0.067 0.933 42 H 0.024 0.976 43 H 0.062 0.938 44 H 0.041 0.959 45 H 0.031 0.969 46 H 0.015 0.985 47 H 0.014 0.986 48 H 0.259 0.741 49 H 0.079 0.921 50 H 0.054 0.946 51 H 0.128 0.872 52 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.809 13.961 -6.548 29.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.120 4.120 3 C -0.115 4.115 4 C -0.159 4.159 5 C 0.014 3.986 6 N -0.202 5.202 7 C -0.065 4.065 8 C -0.158 4.158 9 C -0.149 4.149 10 C -0.021 4.021 11 H 0.069 0.931 12 N -0.317 5.317 13 C -0.062 4.062 14 C -0.103 4.103 15 H 0.083 0.917 16 C -0.191 4.191 17 C -0.010 4.010 18 C -0.551 4.551 19 H 0.074 0.926 20 C -0.146 4.146 21 N -0.536 5.536 22 Si 0.718 3.282 23 H -0.207 1.207 24 H -0.213 1.213 25 H -0.199 1.199 26 C -0.075 4.075 27 C -0.189 4.189 28 C -0.111 4.111 29 H 0.085 0.915 30 H 0.082 0.918 31 H 0.082 0.918 32 H 0.139 0.861 33 H 0.142 0.858 34 H 0.098 0.902 35 H 0.062 0.938 36 H 0.090 0.910 37 H 0.091 0.909 38 H 0.086 0.914 39 H 0.087 0.913 40 H 0.157 0.843 41 H 0.086 0.914 42 H 0.043 0.957 43 H 0.081 0.919 44 H 0.060 0.940 45 H 0.050 0.950 46 H 0.033 0.967 47 H 0.032 0.968 48 H 0.069 0.931 49 H 0.097 0.903 50 H 0.073 0.927 51 H 0.146 0.854 52 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -24.097 14.287 -6.662 28.795 hybrid contribution 0.074 -1.227 0.389 1.290 sum -24.023 13.060 -6.272 28.054 Atomic orbital electron populations 1.20728 0.91389 1.02532 1.02010 1.19834 0.95980 0.93172 1.03007 1.20869 0.93614 0.97469 0.99543 1.20762 0.93956 0.96742 1.04423 1.18974 0.88104 0.93715 0.97778 1.58936 1.04425 1.15176 1.41695 1.22252 0.96084 0.97928 0.90238 1.21643 0.93505 0.97903 1.02718 1.21607 1.00592 0.93931 0.98763 1.21504 0.91768 0.90633 0.98241 0.93074 1.60616 1.06053 1.04987 1.60059 1.22177 0.89580 0.99405 0.95032 1.21223 0.97629 0.91361 1.00073 0.91668 1.21740 0.97053 1.01431 0.98906 1.19109 0.89157 0.97007 0.95689 1.21237 1.00458 0.96138 1.37239 0.92576 1.25029 0.97185 0.96928 0.95477 1.69967 1.11433 1.32705 1.39527 0.86625 0.78958 0.85008 0.77589 1.20741 1.21338 1.19934 1.22423 0.95410 0.87923 1.01748 1.21365 0.94721 0.97511 1.05290 1.20889 0.93690 0.97512 0.99055 0.91549 0.91770 0.91802 0.86089 0.85831 0.90227 0.93790 0.91020 0.90854 0.91400 0.91260 0.84336 0.91434 0.95741 0.91861 0.94018 0.95026 0.96679 0.96755 0.93115 0.90300 0.92741 0.85448 0.86152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.67 10.01 36.01 0.36 -0.31 16 2 C -0.12 -1.02 5.88 -104.59 -0.62 -1.63 16 3 C -0.10 -0.82 9.69 -39.61 -0.38 -1.21 16 4 C -0.14 -1.32 9.16 -39.38 -0.36 -1.68 16 5 C 0.11 1.19 5.64 -83.78 -0.47 0.72 16 6 N -0.49 -5.24 4.70 -171.07 -0.80 -6.05 16 7 C 0.06 0.56 5.26 -3.83 -0.02 0.54 16 8 C -0.12 -1.14 6.09 -26.65 -0.16 -1.30 16 9 C -0.11 -1.29 5.49 -26.61 -0.15 -1.44 16 10 C 0.09 1.11 2.66 -67.57 -0.18 0.93 16 11 H 0.05 0.71 7.80 -51.93 -0.41 0.30 16 12 N -0.68 -9.85 6.31 -106.57 -0.67 -10.52 16 13 C 0.07 1.15 4.94 -3.82 -0.02 1.13 16 14 C -0.08 -1.71 2.55 -90.62 -0.23 -1.94 16 15 H 0.06 1.39 8.14 -51.93 -0.42 0.96 16 16 C -0.13 -2.49 8.77 37.16 0.33 -2.16 16 17 C 0.03 0.72 4.45 -27.88 -0.12 0.59 16 18 C -0.51 -14.38 8.41 -34.44 -0.29 -14.67 16 19 H 0.06 1.53 7.06 -52.48 -0.37 1.16 16 20 C 0.05 1.57 5.46 -17.82 -0.10 1.47 16 21 N -0.90 -27.07 13.29 55.43 0.74 -26.33 16 22 Si 0.89 21.79 29.54 -169.99 -5.02 16.77 16 23 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16 24 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 25 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 26 C 0.05 0.58 3.42 -3.77 -0.01 0.56 16 27 C -0.17 -1.71 8.82 -39.38 -0.35 -2.05 16 28 C -0.09 -0.85 9.69 -39.62 -0.38 -1.23 16 29 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.06 0.35 8.08 -51.93 -0.42 -0.07 16 31 H 0.06 0.33 8.08 -51.93 -0.42 -0.09 16 32 H 0.12 0.78 8.06 -52.49 -0.42 0.36 16 33 H 0.12 1.03 7.17 -52.48 -0.38 0.65 16 34 H 0.08 0.65 6.72 -51.93 -0.35 0.30 16 35 H 0.04 0.42 8.14 -51.93 -0.42 0.00 16 36 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 39 H 0.07 0.88 7.52 -51.93 -0.39 0.49 16 40 H 0.34 4.58 6.62 -39.29 -0.26 4.32 16 41 H 0.07 1.21 7.49 -51.93 -0.39 0.82 16 42 H 0.02 0.43 8.06 -51.93 -0.42 0.01 16 43 H 0.06 1.28 6.95 -51.93 -0.36 0.91 16 44 H 0.04 0.77 8.14 -51.93 -0.42 0.34 16 45 H 0.03 0.49 6.68 -51.93 -0.35 0.14 16 46 H 0.01 0.41 8.14 -51.93 -0.42 -0.01 16 47 H 0.01 0.39 8.14 -51.93 -0.42 -0.04 16 48 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 49 H 0.08 0.86 7.00 -51.93 -0.36 0.50 16 50 H 0.05 0.61 7.71 -51.93 -0.40 0.21 16 51 H 0.13 1.22 5.81 -52.49 -0.30 0.91 16 52 H 0.12 0.89 8.06 -52.49 -0.42 0.46 16 LS Contribution 397.99 15.07 6.00 6.00 Total: -1.00 -30.15 397.99 -12.28 -42.43 By element: Atomic # 1 Polarization: 10.72 SS G_CDS: -9.36 Total: 1.36 kcal Atomic # 6 Polarization: -20.51 SS G_CDS: -3.16 Total: -23.67 kcal Atomic # 7 Polarization: -42.15 SS G_CDS: -0.74 Total: -42.89 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -30.15 -12.28 -42.43 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000877066983.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.138 kcal (2) G-P(sol) polarization free energy of solvation -30.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.429 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.710 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds