Wall clock time and date at job start Tue Mar 31 2020 10:52:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38290 * 119.92525 * 2 1 4 4 C 1.38105 * 120.07286 * 180.02562 * 3 2 1 5 5 C 1.38911 * 119.92587 * 359.97438 * 4 3 2 6 6 N 1.39675 * 120.07717 * 179.97438 * 5 4 3 7 7 C 1.46848 * 110.99704 * 303.95569 * 6 5 4 8 8 C 1.53037 * 109.52381 * 174.15561 * 7 6 5 9 9 C 1.53123 * 109.27398 * 59.18254 * 8 7 6 10 10 C 1.53120 * 109.21163 * 302.31409 * 9 8 7 11 11 H 1.08997 * 109.50353 * 297.74224 * 10 9 8 12 12 N 1.46898 * 109.50209 * 177.62873 * 10 9 8 13 13 C 1.46901 * 111.00228 * 85.00064 * 12 10 9 14 14 C 1.53002 * 109.47100 * 180.02562 * 13 12 10 15 15 H 1.09002 * 109.47162 * 54.99662 * 14 13 12 16 16 C 1.52996 * 109.47063 * 294.99446 * 14 13 12 17 17 C 1.53006 * 109.46919 * 174.99817 * 14 13 12 18 18 C 1.50701 * 109.46817 * 184.99513 * 17 14 13 19 19 H 1.08004 * 120.00162 * 0.02562 * 18 17 14 20 20 C 1.37878 * 119.99803 * 179.97438 * 18 17 14 21 21 N 1.31515 * 120.00071 * 0.02562 * 20 18 17 22 22 Si 1.86804 * 120.00121 * 180.02562 * 20 18 17 23 23 H 1.48495 * 109.47060 * 90.00059 * 22 20 18 24 24 H 1.48502 * 109.46938 * 210.00617 * 22 20 18 25 25 H 1.48497 * 109.46824 * 330.00073 * 22 20 18 26 26 C 1.46845 * 111.00222 * 179.75007 * 6 5 4 27 27 C 1.38915 * 119.84875 * 0.26280 * 5 4 3 28 28 C 1.38101 * 119.92439 * 359.48436 * 27 5 4 29 29 H 1.08998 * 109.47780 * 89.99389 * 1 2 3 30 30 H 1.08997 * 109.47390 * 210.00072 * 1 2 3 31 31 H 1.09005 * 109.46961 * 329.99650 * 1 2 3 32 32 H 1.07992 * 119.96150 * 0.02562 * 3 2 1 33 33 H 1.08004 * 120.03699 * 179.97438 * 4 3 2 34 34 H 1.09006 * 109.46097 * 54.14359 * 7 6 5 35 35 H 1.08996 * 109.46972 * 294.17670 * 7 6 5 36 36 H 1.08996 * 109.50616 * 299.24564 * 8 7 6 37 37 H 1.08993 * 109.53667 * 179.13827 * 8 7 6 38 38 H 1.09002 * 109.52319 * 62.25202 * 9 8 7 39 39 H 1.08995 * 109.52318 * 182.37884 * 9 8 7 40 40 H 1.00897 * 111.00285 * 208.95468 * 12 10 9 41 41 H 1.09004 * 109.46961 * 299.99341 * 13 12 10 42 42 H 1.08999 * 109.47265 * 59.99958 * 13 12 10 43 43 H 1.08997 * 109.47512 * 179.97438 * 16 14 13 44 44 H 1.08995 * 109.47771 * 300.00608 * 16 14 13 45 45 H 1.09006 * 109.47050 * 60.00338 * 16 14 13 46 46 H 1.08996 * 109.46970 * 305.00040 * 17 14 13 47 47 H 1.08997 * 109.47030 * 64.99808 * 17 14 13 48 48 H 0.97002 * 120.00207 * 179.97438 * 21 20 18 49 49 H 1.09003 * 109.45905 * 305.85722 * 26 6 5 50 50 H 1.09002 * 109.46112 * 65.81919 * 26 6 5 51 51 H 1.07996 * 120.03642 * 179.72284 * 27 5 4 52 52 H 1.08000 * 119.96000 * 180.25242 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1969 1.1985 0.0000 4 6 3.5779 1.2021 -0.0005 5 6 4.2740 0.0000 -0.0005 6 7 5.6708 -0.0001 -0.0016 7 6 6.1961 0.7651 -1.1395 8 6 7.7191 0.8664 -1.0283 9 6 8.3197 -0.5420 -1.0155 10 6 7.7213 -1.3344 0.1501 11 1 7.9853 -0.8524 1.0914 12 7 8.2505 -2.7047 0.1346 13 6 9.5421 -2.7781 0.8306 14 6 10.0606 -4.2171 0.7930 15 1 10.1036 -4.5609 -0.2405 16 6 9.1184 -5.1198 1.5920 17 6 11.4609 -4.2708 1.4072 18 6 12.0210 -5.6621 1.2596 19 1 11.4369 -6.4309 0.7758 20 6 13.2797 -5.9531 1.7413 21 7 13.9913 -5.0168 2.3300 22 14 13.9744 -7.6775 1.5578 23 1 14.7134 -7.7793 0.2738 24 1 14.8987 -7.9612 2.6850 25 1 12.8632 -8.6625 1.5689 26 6 6.1970 -1.3710 0.0046 27 6 3.5778 -1.2021 -0.0055 28 6 2.1968 -1.1985 0.0003 29 1 -0.3634 0.0001 -1.0276 30 1 -0.3634 -0.8899 0.5138 31 1 -0.3633 0.8900 0.5139 32 1 1.6551 2.1327 0.0004 33 1 4.1161 2.1385 -0.0010 34 1 5.7643 1.7660 -1.1346 35 1 5.9326 0.2607 -2.0692 36 1 7.9830 1.3829 -0.1056 37 1 8.1107 1.4212 -1.8808 38 1 8.0889 -1.0451 -1.9545 39 1 9.4008 -0.4759 -0.8939 40 1 7.5878 -3.3528 0.5328 41 1 10.2585 -2.1212 0.3374 42 1 9.4148 -2.4644 1.8667 43 1 9.4874 -6.1450 1.5648 44 1 9.0752 -4.7760 2.6254 45 1 8.1207 -5.0815 1.1544 46 1 12.1101 -3.5614 0.8941 47 1 11.4041 -4.0123 2.4645 48 1 14.8766 -5.2216 2.6693 49 1 5.7657 -1.9218 0.8405 50 1 5.9334 -1.8654 -0.9304 51 1 4.1159 -2.1385 -0.0101 52 1 1.6550 -2.1327 0.0006 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000877066983.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:52:42 Heat of formation + Delta-G solvation = -8.409548 kcal Electronic energy + Delta-G solvation = -26095.936310 eV Core-core repulsion = 22672.203681 eV Total energy + Delta-G solvation = -3423.732629 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.43014 -39.45435 -38.04098 -35.93418 -34.59331 -33.61454 -32.21983 -31.65429 -30.29717 -28.64276 -27.37132 -26.81134 -25.07027 -24.75264 -23.59754 -22.57154 -21.60370 -20.93722 -20.37940 -18.52814 -18.43318 -16.96177 -16.62187 -16.49108 -16.28184 -15.94289 -15.66880 -15.45940 -15.30853 -14.97443 -14.64350 -14.46694 -14.44068 -14.35886 -14.01839 -13.91731 -13.62377 -13.37352 -13.28159 -12.98251 -12.79830 -12.77241 -12.64902 -12.41810 -12.27419 -12.20632 -12.01607 -11.89295 -11.82820 -11.58833 -11.45673 -11.43702 -11.06228 -10.90330 -10.53528 -10.47130 -9.85118 -9.41224 -8.66934 -8.17378 -6.26534 0.43698 0.49637 1.40069 1.41190 1.52052 2.41555 2.52759 2.85806 3.15895 3.33312 3.66987 3.77384 3.97813 4.00960 4.06768 4.10124 4.16960 4.22807 4.27178 4.30574 4.43324 4.45753 4.47313 4.53760 4.57801 4.68004 4.72110 4.75650 4.81015 4.84663 4.88961 4.90047 4.94359 5.02111 5.04573 5.16015 5.18024 5.22539 5.25004 5.35896 5.37504 5.39374 5.46338 5.48224 5.55554 5.75500 5.79659 5.88963 5.89787 5.96913 6.11528 6.30892 6.35939 6.48116 6.89409 7.41587 8.94626 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.025147 B = 0.002118 C = 0.001992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1113.204002 B =13216.860962 C =14054.954792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.124 4.124 3 C -0.101 4.101 4 C -0.146 4.146 5 C 0.093 3.907 6 N -0.495 5.495 7 C 0.061 3.939 8 C -0.112 4.112 9 C -0.109 4.109 10 C 0.091 3.909 11 H 0.038 0.962 12 N -0.681 5.681 13 C 0.082 3.918 14 C -0.075 4.075 15 H 0.058 0.942 16 C -0.127 4.127 17 C 0.033 3.967 18 C -0.528 4.528 19 H 0.062 0.938 20 C -0.004 4.004 21 N -0.935 5.935 22 Si 0.962 3.038 23 H -0.274 1.274 24 H -0.284 1.284 25 H -0.263 1.263 26 C 0.062 3.938 27 C -0.182 4.182 28 C -0.103 4.103 29 H 0.074 0.926 30 H 0.069 0.931 31 H 0.073 0.927 32 H 0.142 0.858 33 H 0.133 0.867 34 H 0.094 0.906 35 H 0.043 0.957 36 H 0.067 0.933 37 H 0.091 0.909 38 H 0.065 0.935 39 H 0.054 0.946 40 H 0.344 0.656 41 H 0.057 0.943 42 H 0.020 0.980 43 H 0.045 0.955 44 H 0.039 0.961 45 H 0.067 0.933 46 H -0.014 1.014 47 H -0.011 1.011 48 H 0.262 0.738 49 H 0.079 0.921 50 H 0.055 0.945 51 H 0.128 0.872 52 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.018 13.855 -7.307 31.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.125 4.125 3 C -0.119 4.119 4 C -0.166 4.166 5 C -0.004 4.004 6 N -0.210 5.210 7 C -0.064 4.064 8 C -0.150 4.150 9 C -0.148 4.148 10 C -0.019 4.019 11 H 0.056 0.944 12 N -0.313 5.313 13 C -0.048 4.048 14 C -0.093 4.093 15 H 0.076 0.924 16 C -0.184 4.184 17 C -0.005 4.005 18 C -0.566 4.566 19 H 0.080 0.920 20 C -0.201 4.201 21 N -0.576 5.576 22 Si 0.787 3.213 23 H -0.200 1.200 24 H -0.210 1.210 25 H -0.187 1.187 26 C -0.065 4.065 27 C -0.203 4.203 28 C -0.122 4.122 29 H 0.093 0.907 30 H 0.088 0.912 31 H 0.092 0.908 32 H 0.160 0.840 33 H 0.151 0.849 34 H 0.112 0.888 35 H 0.061 0.939 36 H 0.085 0.915 37 H 0.109 0.891 38 H 0.084 0.916 39 H 0.073 0.927 40 H 0.164 0.836 41 H 0.075 0.925 42 H 0.038 0.962 43 H 0.065 0.935 44 H 0.058 0.942 45 H 0.086 0.914 46 H 0.004 0.996 47 H 0.007 0.993 48 H 0.070 0.930 49 H 0.097 0.903 50 H 0.073 0.927 51 H 0.146 0.854 52 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -26.335 14.183 -7.431 30.820 hybrid contribution 0.707 -1.134 0.622 1.474 sum -25.628 13.049 -6.809 29.554 Atomic orbital electron populations 1.20770 0.89622 1.03362 1.02782 1.20191 0.97403 0.92966 1.01942 1.21173 0.93435 0.98492 0.98845 1.20953 0.94561 0.96745 1.04346 1.19122 0.87950 0.94395 0.98965 1.58970 1.04889 1.14748 1.42402 1.22289 0.95715 0.98544 0.89804 1.21602 0.93702 0.96438 1.03303 1.21588 0.99757 0.95288 0.98137 1.21505 0.93041 0.89303 0.98010 0.94360 1.60544 1.05073 1.06445 1.59287 1.21845 0.90918 0.97001 0.95012 1.21012 0.95195 0.93860 0.99278 0.92376 1.21650 0.98306 0.99666 0.98779 1.19003 0.91958 0.95441 0.94086 1.21638 1.00861 0.97150 1.36957 0.92019 1.25976 0.97693 1.01379 0.95101 1.70106 1.11883 1.35059 1.40563 0.85490 0.78364 0.79754 0.77707 1.19966 1.20960 1.18679 1.22255 0.93897 0.88593 1.01754 1.21489 0.95389 0.97496 1.05893 1.21138 0.93493 0.98559 0.98962 0.90707 0.91190 0.90787 0.83999 0.84945 0.88759 0.93914 0.91459 0.89070 0.91631 0.92749 0.83567 0.92494 0.96155 0.93538 0.94198 0.91417 0.99559 0.99302 0.92975 0.90250 0.92727 0.85446 0.84787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.06 10.01 71.24 0.71 -0.35 16 2 C -0.12 -1.89 5.88 -19.84 -0.12 -2.00 16 3 C -0.10 -1.53 9.69 22.25 0.22 -1.31 16 4 C -0.15 -2.55 9.16 22.40 0.21 -2.34 16 5 C 0.09 1.88 5.64 38.22 0.22 2.09 16 6 N -0.49 -10.17 4.70 -695.13 -3.27 -13.44 16 7 C 0.06 1.07 5.26 86.33 0.45 1.52 16 8 C -0.11 -2.02 6.09 30.65 0.19 -1.83 16 9 C -0.11 -2.52 5.49 30.68 0.17 -2.35 16 10 C 0.09 2.26 2.66 45.01 0.12 2.38 16 11 H 0.04 1.06 7.80 -2.39 -0.02 1.05 16 12 N -0.68 -19.22 6.31 -491.07 -3.10 -22.31 16 13 C 0.08 2.86 4.94 86.30 0.43 3.28 16 14 C -0.07 -3.07 2.55 -10.79 -0.03 -3.10 16 15 H 0.06 2.48 8.14 -2.39 -0.02 2.46 16 16 C -0.13 -4.62 8.77 71.98 0.63 -3.99 16 17 C 0.03 1.74 4.45 29.85 0.13 1.88 16 18 C -0.53 -30.12 8.41 25.60 0.22 -29.91 16 19 H 0.06 3.38 7.06 -2.91 -0.02 3.36 16 20 C 0.00 -0.25 5.46 84.65 0.46 0.21 16 21 N -0.94 -57.76 13.29 21.45 0.28 -57.47 16 22 Si 0.96 44.88 29.54 68.60 2.03 46.90 16 23 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 24 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 25 H -0.26 -11.66 7.11 99.48 0.71 -10.95 16 26 C 0.06 1.33 3.42 86.37 0.30 1.63 16 27 C -0.18 -3.53 8.82 22.40 0.20 -3.33 16 28 C -0.10 -1.73 9.69 22.25 0.22 -1.52 16 29 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 30 H 0.07 0.61 8.08 -2.39 -0.02 0.59 16 31 H 0.07 0.58 8.08 -2.38 -0.02 0.56 16 32 H 0.14 1.46 8.06 -2.91 -0.02 1.44 16 33 H 0.13 1.97 7.17 -2.91 -0.02 1.95 16 34 H 0.09 1.37 6.72 -2.38 -0.02 1.35 16 35 H 0.04 0.76 8.14 -2.39 -0.02 0.74 16 36 H 0.07 1.28 8.14 -2.39 -0.02 1.27 16 37 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 38 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 39 H 0.05 1.40 7.52 -2.39 -0.02 1.39 16 40 H 0.34 8.88 6.62 -89.70 -0.59 8.28 16 41 H 0.06 2.11 7.49 -2.39 -0.02 2.09 16 42 H 0.02 0.73 8.06 -2.39 -0.02 0.71 16 43 H 0.05 1.84 6.95 -2.39 -0.02 1.82 16 44 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 45 H 0.07 1.97 6.68 -2.38 -0.02 1.95 16 46 H -0.01 -0.81 8.14 -2.39 -0.02 -0.83 16 47 H -0.01 -0.66 8.14 -2.39 -0.02 -0.68 16 48 H 0.26 15.20 8.31 -92.71 -0.77 14.43 16 49 H 0.08 1.67 7.00 -2.39 -0.02 1.66 16 50 H 0.05 1.16 7.71 -2.39 -0.02 1.15 16 51 H 0.13 2.35 5.81 -2.91 -0.02 2.33 16 52 H 0.13 1.77 8.06 -2.91 -0.02 1.74 16 Total: -1.00 -65.59 397.99 0.94 -64.65 By element: Atomic # 1 Polarization: 20.43 SS G_CDS: 0.28 Total: 20.71 kcal Atomic # 6 Polarization: -43.75 SS G_CDS: 4.71 Total: -39.04 kcal Atomic # 7 Polarization: -87.14 SS G_CDS: -6.08 Total: -93.22 kcal Atomic # 14 Polarization: 44.88 SS G_CDS: 2.03 Total: 46.90 kcal Total: -65.59 0.94 -64.65 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000877066983.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.245 kcal (2) G-P(sol) polarization free energy of solvation -65.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.346 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.937 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.654 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.410 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds