Wall clock time and date at job start Tue Mar 31 2020 10:58:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50706 * 109.47238 * 2 1 4 4 C 1.38238 * 119.99571 * 269.72634 * 3 2 1 5 5 C 1.38240 * 119.99592 * 179.73993 * 4 3 2 6 6 C 1.38240 * 119.99908 * 0.55508 * 5 4 3 7 7 C 1.50697 * 119.99683 * 179.72243 * 6 5 4 8 8 N 1.46899 * 109.46979 * 269.97288 * 7 6 5 9 9 C 1.46960 * 111.00382 * 293.80206 * 8 7 6 10 10 C 1.53049 * 109.36586 * 176.81425 * 9 8 7 11 11 N 1.46951 * 109.36475 * 58.39869 * 10 9 8 12 12 C 1.46907 * 110.99596 * 176.81308 * 11 10 9 13 13 C 1.52994 * 109.47236 * 293.79977 * 12 11 10 14 14 C 1.52998 * 109.47120 * 180.02562 * 13 12 11 15 15 C 1.50706 * 109.46883 * 179.97438 * 14 13 12 16 16 H 1.08002 * 120.00282 * 0.02562 * 15 14 13 17 17 C 1.37881 * 119.99584 * 179.97438 * 15 14 13 18 18 N 1.31520 * 119.99466 * 180.02562 * 17 15 14 19 19 Si 1.86791 * 120.00342 * 359.97438 * 17 15 14 20 20 H 1.48503 * 109.47308 * 89.99850 * 19 17 15 21 21 H 1.48502 * 109.47555 * 210.00145 * 19 17 15 22 22 H 1.48509 * 109.47055 * 330.00256 * 19 17 15 23 23 C 1.46951 * 110.88303 * 300.67800 * 11 10 9 24 24 C 1.46960 * 110.99871 * 170.00470 * 8 7 6 25 25 C 1.38232 * 119.99983 * 359.69546 * 6 5 4 26 26 C 1.38234 * 120.00207 * 89.99764 * 3 2 1 27 27 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.46832 * 60.00314 * 1 2 3 29 29 H 1.09004 * 109.47261 * 300.00295 * 1 2 3 30 30 H 1.08998 * 109.47533 * 119.99506 * 2 1 3 31 31 H 1.08996 * 109.47853 * 239.99849 * 2 1 3 32 32 H 1.07997 * 120.00032 * 359.97438 * 4 3 2 33 33 H 1.07994 * 119.99783 * 180.27281 * 5 4 3 34 34 H 1.08995 * 109.47238 * 29.97780 * 7 6 5 35 35 H 1.09003 * 109.46698 * 149.97548 * 7 6 5 36 36 H 1.08996 * 109.48635 * 296.78153 * 9 8 7 37 37 H 1.08999 * 109.48722 * 56.84509 * 9 8 7 38 38 H 1.09004 * 109.48301 * 298.43445 * 10 9 8 39 39 H 1.08996 * 109.48970 * 178.37358 * 10 9 8 40 40 H 1.08996 * 109.47105 * 53.80117 * 12 11 10 41 41 H 1.09003 * 109.46781 * 173.80368 * 12 11 10 42 42 H 1.09004 * 109.47104 * 300.00420 * 13 12 11 43 43 H 1.08995 * 109.47068 * 59.99853 * 13 12 11 44 44 H 1.08993 * 109.47240 * 299.99549 * 14 13 12 45 45 H 1.09003 * 109.47079 * 60.00279 * 14 13 12 46 46 H 0.97000 * 119.99717 * 179.97438 * 18 17 15 47 47 H 1.09001 * 109.49356 * 299.35503 * 23 11 10 48 48 H 1.09000 * 109.49382 * 179.28786 * 23 11 10 49 49 H 1.09004 * 109.48469 * 303.15318 * 24 8 7 50 50 H 1.08995 * 109.48867 * 63.22105 * 24 8 7 51 51 H 1.08000 * 120.00014 * 179.97438 * 25 6 5 52 52 H 1.07999 * 119.99681 * 0.02562 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 6 2.2681 2.0705 -1.1972 5 6 2.7238 3.3757 -1.1973 6 6 2.9547 4.0272 -0.0001 7 6 3.4574 5.4478 -0.0002 8 7 4.9264 5.4474 0.0001 9 6 5.4527 4.8937 1.2556 10 6 6.9805 4.8371 1.1842 11 7 7.5075 6.1880 0.9459 12 6 8.9766 6.1876 0.9462 13 6 9.4862 5.8435 2.3471 14 6 11.0162 5.8436 2.3475 15 6 11.5181 5.5053 3.7277 16 1 10.8161 5.3094 4.5247 17 6 12.8737 5.4450 3.9726 18 7 13.3117 5.1492 5.1769 19 14 14.0879 5.7817 2.5937 20 1 14.4102 7.2310 2.5608 21 1 15.3308 5.0034 2.8274 22 1 13.4879 5.3785 1.2964 23 6 6.9813 6.7417 -0.3095 24 6 5.4535 6.7984 -0.2381 25 6 2.7238 3.3757 1.1971 26 6 2.2627 2.0726 1.1971 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 0.5139 0.8900 30 1 1.8934 -0.5137 0.8900 31 1 1.8934 -0.5138 -0.8899 32 1 2.0927 1.5597 -2.1324 33 1 2.9038 3.8847 -2.1325 34 1 3.0944 5.9616 -0.8902 35 1 3.0940 5.9618 0.8897 36 1 5.1508 5.5293 2.0880 37 1 5.0580 3.8885 1.4034 38 1 7.2823 4.1799 0.3687 39 1 7.3745 4.4538 2.1254 40 1 9.3398 5.4457 0.2351 41 1 9.3402 7.1743 0.6595 42 1 9.1229 6.5854 3.0583 43 1 9.1225 4.8569 2.6339 44 1 11.3798 5.1019 1.6364 45 1 11.3795 6.8306 2.0610 46 1 14.2653 5.1064 5.3491 47 1 7.2832 6.1061 -1.1420 48 1 7.3759 7.7469 -0.4573 49 1 5.0594 7.1816 -1.1794 50 1 5.1516 7.4555 0.5774 51 1 2.9046 3.8846 2.1324 52 1 2.0831 1.5633 2.1324 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000880244257.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:58:30 Heat of formation + Delta-G solvation = 14.805847 kcal Electronic energy + Delta-G solvation = -25880.904412 eV Core-core repulsion = 22458.178479 eV Total energy + Delta-G solvation = -3422.725934 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.07735 -38.99568 -36.31470 -34.50567 -33.41458 -31.71571 -31.23630 -30.79711 -30.34425 -28.01424 -26.14214 -24.44927 -23.83224 -22.86389 -22.67232 -21.81723 -20.68021 -19.90671 -19.69125 -16.75587 -16.49478 -16.21129 -15.97719 -15.56691 -15.08085 -14.91608 -14.56538 -14.42638 -14.24522 -14.02757 -13.95335 -13.77477 -13.62790 -13.43964 -13.06091 -12.63925 -12.42189 -12.19556 -12.12162 -11.97518 -11.78960 -11.55560 -11.39836 -11.27807 -11.23393 -11.06824 -10.99828 -10.83151 -10.73733 -10.56281 -9.86849 -9.63378 -9.53056 -9.13450 -9.09022 -8.80951 -8.50297 -8.44687 -8.08568 -6.00812 -3.98207 1.09496 1.22315 3.32878 3.39987 3.41840 3.44068 3.96397 4.09948 4.42746 4.48260 4.51908 4.62776 4.77035 4.80826 4.87899 5.01273 5.05589 5.09603 5.18741 5.21276 5.26417 5.30439 5.33194 5.39072 5.45587 5.45767 5.54367 5.55450 5.61806 5.69793 5.73271 5.77632 5.85908 5.88122 5.88911 5.92702 6.04321 6.09932 6.21153 6.21640 6.40603 6.42325 6.58543 6.59313 6.78919 6.88412 6.90805 6.96207 7.29121 7.31095 7.40568 7.51023 7.84134 8.58753 9.04845 9.61970 11.12767 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.017733 B = 0.002200 C = 0.002045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1578.594695 B =12724.445303 C =13687.721801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.086 4.086 3 C -0.084 4.084 4 C -0.120 4.120 5 C -0.096 4.096 6 C -0.080 4.080 7 C 0.094 3.906 8 N -0.535 5.535 9 C 0.056 3.944 10 C 0.055 3.945 11 N -0.540 5.540 12 C 0.055 3.945 13 C -0.097 4.097 14 C -0.014 4.014 15 C -0.517 4.517 16 H 0.071 0.929 17 C 0.064 3.936 18 N -0.905 5.905 19 Si 0.881 3.119 20 H -0.277 1.277 21 H -0.288 1.288 22 H -0.266 1.266 23 C 0.057 3.943 24 C 0.059 3.941 25 C -0.110 4.110 26 C -0.118 4.118 27 H 0.056 0.944 28 H 0.055 0.945 29 H 0.055 0.945 30 H 0.071 0.929 31 H 0.070 0.930 32 H 0.119 0.881 33 H 0.121 0.879 34 H 0.081 0.919 35 H 0.043 0.957 36 H 0.041 0.959 37 H 0.080 0.920 38 H 0.038 0.962 39 H 0.087 0.913 40 H 0.029 0.971 41 H 0.069 0.931 42 H 0.060 0.940 43 H 0.053 0.947 44 H 0.013 0.987 45 H 0.011 0.989 46 H 0.262 0.738 47 H 0.038 0.962 48 H 0.077 0.923 49 H 0.076 0.924 50 H 0.042 0.958 51 H 0.119 0.881 52 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.348 -4.377 -14.556 31.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.123 4.123 3 C -0.084 4.084 4 C -0.138 4.138 5 C -0.114 4.114 6 C -0.080 4.080 7 C -0.033 4.033 8 N -0.260 5.260 9 C -0.072 4.072 10 C -0.073 4.073 11 N -0.265 5.265 12 C -0.073 4.073 13 C -0.135 4.135 14 C -0.051 4.051 15 C -0.555 4.555 16 H 0.089 0.911 17 C -0.137 4.137 18 N -0.544 5.544 19 Si 0.708 3.292 20 H -0.203 1.203 21 H -0.215 1.215 22 H -0.191 1.191 23 C -0.072 4.072 24 C -0.069 4.069 25 C -0.128 4.128 26 C -0.136 4.136 27 H 0.076 0.924 28 H 0.074 0.926 29 H 0.074 0.926 30 H 0.090 0.910 31 H 0.089 0.911 32 H 0.137 0.863 33 H 0.139 0.861 34 H 0.099 0.901 35 H 0.061 0.939 36 H 0.060 0.940 37 H 0.099 0.901 38 H 0.056 0.944 39 H 0.105 0.895 40 H 0.047 0.953 41 H 0.087 0.913 42 H 0.079 0.921 43 H 0.071 0.929 44 H 0.031 0.969 45 H 0.029 0.971 46 H 0.072 0.928 47 H 0.056 0.944 48 H 0.096 0.904 49 H 0.094 0.906 50 H 0.061 0.939 51 H 0.137 0.863 52 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -27.176 -4.385 -14.456 31.093 hybrid contribution 0.857 0.177 -0.603 1.063 sum -26.319 -4.207 -15.059 30.613 Atomic orbital electron populations 1.21743 0.94780 1.01646 1.02162 1.20549 0.96115 0.92794 1.02891 1.19889 0.99132 0.96150 0.93252 1.21000 1.00435 0.94930 0.97428 1.20971 0.98344 0.94542 0.97583 1.19708 0.99126 0.95951 0.93228 1.21007 0.87931 0.92917 1.01474 1.62188 1.06092 1.22255 1.35420 1.22262 0.95016 1.00094 0.89826 1.22187 0.93486 0.89793 1.01815 1.62216 1.08941 1.21975 1.33354 1.22296 0.85082 1.00625 0.99253 1.21468 0.97555 1.00827 0.93636 1.19556 0.91648 0.96122 0.97817 1.21149 0.92512 1.47085 0.94757 0.91052 1.25050 0.98477 0.94751 0.95395 1.69924 1.14344 1.49576 1.20570 0.86763 0.80662 0.78480 0.83271 1.20330 1.21451 1.19086 1.22121 0.93788 1.00022 0.91266 1.22158 0.95020 0.88983 1.00710 1.21066 0.99239 0.94933 0.97579 1.20985 1.00234 0.94855 0.97533 0.92447 0.92620 0.92576 0.91021 0.91092 0.86325 0.86134 0.90089 0.93931 0.94030 0.90132 0.94359 0.89454 0.95307 0.91275 0.92077 0.92881 0.96870 0.97100 0.92816 0.94359 0.90430 0.90610 0.93933 0.86253 0.86214 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.85 9.89 37.16 0.37 -0.48 16 2 C -0.09 -0.58 6.07 -27.88 -0.17 -0.75 16 3 C -0.08 -0.73 5.13 -104.62 -0.54 -1.26 16 4 C -0.12 -1.05 9.70 -39.58 -0.38 -1.43 16 5 C -0.10 -0.89 9.70 -39.58 -0.38 -1.27 16 6 C -0.08 -0.77 4.89 -104.63 -0.51 -1.28 16 7 C 0.09 0.88 5.12 -4.98 -0.03 0.85 16 8 N -0.53 -5.98 4.70 -235.91 -1.11 -7.09 16 9 C 0.06 0.68 5.25 -3.77 -0.02 0.66 16 10 C 0.06 0.79 5.41 -3.77 -0.02 0.77 16 11 N -0.54 -8.11 4.71 -234.47 -1.10 -9.22 16 12 C 0.05 0.93 4.96 -3.82 -0.02 0.91 16 13 C -0.10 -1.98 5.09 -26.73 -0.14 -2.12 16 14 C -0.01 -0.33 4.04 -27.88 -0.11 -0.44 16 15 C -0.52 -15.07 9.66 -34.44 -0.33 -15.40 16 16 H 0.07 2.23 7.99 -52.49 -0.42 1.81 16 17 C 0.06 1.90 5.47 -17.82 -0.10 1.81 16 18 N -0.90 -28.37 13.96 55.43 0.77 -27.60 16 19 Si 0.88 22.14 27.47 -169.99 -4.67 17.47 16 20 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 21 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 22 H -0.27 -6.44 6.54 56.52 0.37 -6.07 16 23 C 0.06 0.71 5.61 -3.77 -0.02 0.69 16 24 C 0.06 0.64 5.61 -3.76 -0.02 0.62 16 25 C -0.11 -1.04 7.92 -39.58 -0.31 -1.35 16 26 C -0.12 -1.06 9.70 -39.58 -0.38 -1.44 16 27 H 0.06 0.28 8.14 -51.93 -0.42 -0.15 16 28 H 0.05 0.33 8.14 -51.93 -0.42 -0.10 16 29 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.07 0.45 8.09 -51.93 -0.42 0.03 16 31 H 0.07 0.44 8.08 -51.93 -0.42 0.02 16 32 H 0.12 0.84 8.06 -52.49 -0.42 0.41 16 33 H 0.12 0.98 8.06 -52.49 -0.42 0.55 16 34 H 0.08 0.66 7.97 -51.93 -0.41 0.24 16 35 H 0.04 0.39 8.06 -51.93 -0.42 -0.03 16 36 H 0.04 0.53 8.14 -51.93 -0.42 0.10 16 37 H 0.08 0.96 5.95 -51.93 -0.31 0.65 16 38 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.09 1.33 6.34 -51.93 -0.33 1.00 16 40 H 0.03 0.49 8.12 -51.93 -0.42 0.07 16 41 H 0.07 1.13 8.03 -51.93 -0.42 0.72 16 42 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 43 H 0.05 1.09 6.49 -51.93 -0.34 0.75 16 44 H 0.01 0.32 7.20 -51.93 -0.37 -0.05 16 45 H 0.01 0.26 7.57 -51.93 -0.39 -0.13 16 46 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 47 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 48 H 0.08 0.90 8.07 -51.93 -0.42 0.48 16 49 H 0.08 0.67 8.07 -51.93 -0.42 0.26 16 50 H 0.04 0.48 8.14 -51.93 -0.42 0.05 16 51 H 0.12 1.04 7.99 -52.49 -0.42 0.62 16 52 H 0.12 0.90 8.06 -52.49 -0.42 0.47 16 LS Contribution 402.45 15.07 6.06 6.06 Total: -1.00 -31.52 402.45 -12.91 -44.43 By element: Atomic # 1 Polarization: 6.61 SS G_CDS: -9.75 Total: -3.14 kcal Atomic # 6 Polarization: -17.80 SS G_CDS: -3.12 Total: -20.92 kcal Atomic # 7 Polarization: -42.47 SS G_CDS: -1.44 Total: -43.91 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -4.67 Total: 17.47 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -31.52 -12.91 -44.43 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000880244257.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.240 kcal (2) G-P(sol) polarization free energy of solvation -31.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.913 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.434 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds