Wall clock time and date at job start Tue Mar 31 2020 10:58:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50706 * 109.47238 * 2 1 4 4 C 1.38238 * 119.99571 * 269.72634 * 3 2 1 5 5 C 1.38240 * 119.99592 * 179.73993 * 4 3 2 6 6 C 1.38240 * 119.99908 * 0.55508 * 5 4 3 7 7 C 1.50697 * 119.99683 * 179.72243 * 6 5 4 8 8 N 1.46899 * 109.46979 * 269.97288 * 7 6 5 9 9 C 1.46960 * 111.00382 * 293.80206 * 8 7 6 10 10 C 1.53049 * 109.36586 * 176.81425 * 9 8 7 11 11 N 1.46951 * 109.36475 * 58.39869 * 10 9 8 12 12 C 1.46907 * 110.99596 * 176.81308 * 11 10 9 13 13 C 1.52994 * 109.47236 * 293.79977 * 12 11 10 14 14 C 1.52998 * 109.47120 * 180.02562 * 13 12 11 15 15 C 1.50706 * 109.46883 * 179.97438 * 14 13 12 16 16 H 1.08002 * 120.00282 * 0.02562 * 15 14 13 17 17 C 1.37881 * 119.99584 * 179.97438 * 15 14 13 18 18 N 1.31520 * 119.99466 * 180.02562 * 17 15 14 19 19 Si 1.86791 * 120.00342 * 359.97438 * 17 15 14 20 20 H 1.48503 * 109.47308 * 89.99850 * 19 17 15 21 21 H 1.48502 * 109.47555 * 210.00145 * 19 17 15 22 22 H 1.48509 * 109.47055 * 330.00256 * 19 17 15 23 23 C 1.46951 * 110.88303 * 300.67800 * 11 10 9 24 24 C 1.46960 * 110.99871 * 170.00470 * 8 7 6 25 25 C 1.38232 * 119.99983 * 359.69546 * 6 5 4 26 26 C 1.38234 * 120.00207 * 89.99764 * 3 2 1 27 27 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.46832 * 60.00314 * 1 2 3 29 29 H 1.09004 * 109.47261 * 300.00295 * 1 2 3 30 30 H 1.08998 * 109.47533 * 119.99506 * 2 1 3 31 31 H 1.08996 * 109.47853 * 239.99849 * 2 1 3 32 32 H 1.07997 * 120.00032 * 359.97438 * 4 3 2 33 33 H 1.07994 * 119.99783 * 180.27281 * 5 4 3 34 34 H 1.08995 * 109.47238 * 29.97780 * 7 6 5 35 35 H 1.09003 * 109.46698 * 149.97548 * 7 6 5 36 36 H 1.08996 * 109.48635 * 296.78153 * 9 8 7 37 37 H 1.08999 * 109.48722 * 56.84509 * 9 8 7 38 38 H 1.09004 * 109.48301 * 298.43445 * 10 9 8 39 39 H 1.08996 * 109.48970 * 178.37358 * 10 9 8 40 40 H 1.08996 * 109.47105 * 53.80117 * 12 11 10 41 41 H 1.09003 * 109.46781 * 173.80368 * 12 11 10 42 42 H 1.09004 * 109.47104 * 300.00420 * 13 12 11 43 43 H 1.08995 * 109.47068 * 59.99853 * 13 12 11 44 44 H 1.08993 * 109.47240 * 299.99549 * 14 13 12 45 45 H 1.09003 * 109.47079 * 60.00279 * 14 13 12 46 46 H 0.97000 * 119.99717 * 179.97438 * 18 17 15 47 47 H 1.09001 * 109.49356 * 299.35503 * 23 11 10 48 48 H 1.09000 * 109.49382 * 179.28786 * 23 11 10 49 49 H 1.09004 * 109.48469 * 303.15318 * 24 8 7 50 50 H 1.08995 * 109.48867 * 63.22105 * 24 8 7 51 51 H 1.08000 * 120.00014 * 179.97438 * 25 6 5 52 52 H 1.07999 * 119.99681 * 0.02562 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 6 2.2681 2.0705 -1.1972 5 6 2.7238 3.3757 -1.1973 6 6 2.9547 4.0272 -0.0001 7 6 3.4574 5.4478 -0.0002 8 7 4.9264 5.4474 0.0001 9 6 5.4527 4.8937 1.2556 10 6 6.9805 4.8371 1.1842 11 7 7.5075 6.1880 0.9459 12 6 8.9766 6.1876 0.9462 13 6 9.4862 5.8435 2.3471 14 6 11.0162 5.8436 2.3475 15 6 11.5181 5.5053 3.7277 16 1 10.8161 5.3094 4.5247 17 6 12.8737 5.4450 3.9726 18 7 13.3117 5.1492 5.1769 19 14 14.0879 5.7817 2.5937 20 1 14.4102 7.2310 2.5608 21 1 15.3308 5.0034 2.8274 22 1 13.4879 5.3785 1.2964 23 6 6.9813 6.7417 -0.3095 24 6 5.4535 6.7984 -0.2381 25 6 2.7238 3.3757 1.1971 26 6 2.2627 2.0726 1.1971 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 0.5139 0.8900 30 1 1.8934 -0.5137 0.8900 31 1 1.8934 -0.5138 -0.8899 32 1 2.0927 1.5597 -2.1324 33 1 2.9038 3.8847 -2.1325 34 1 3.0944 5.9616 -0.8902 35 1 3.0940 5.9618 0.8897 36 1 5.1508 5.5293 2.0880 37 1 5.0580 3.8885 1.4034 38 1 7.2823 4.1799 0.3687 39 1 7.3745 4.4538 2.1254 40 1 9.3398 5.4457 0.2351 41 1 9.3402 7.1743 0.6595 42 1 9.1229 6.5854 3.0583 43 1 9.1225 4.8569 2.6339 44 1 11.3798 5.1019 1.6364 45 1 11.3795 6.8306 2.0610 46 1 14.2653 5.1064 5.3491 47 1 7.2832 6.1061 -1.1420 48 1 7.3759 7.7469 -0.4573 49 1 5.0594 7.1816 -1.1794 50 1 5.1516 7.4555 0.5774 51 1 2.9046 3.8846 2.1324 52 1 2.0831 1.5633 2.1324 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000880244257.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:58:29 Heat of formation + Delta-G solvation = -3.117009 kcal Electronic energy + Delta-G solvation = -25881.681606 eV Core-core repulsion = 22458.178479 eV Total energy + Delta-G solvation = -3423.503127 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.85630 -39.90835 -37.40640 -35.70601 -34.82922 -33.46489 -32.04968 -31.67836 -31.24086 -29.32750 -27.40535 -25.50562 -24.78570 -23.75469 -23.53012 -23.08329 -21.62143 -21.33142 -20.72534 -18.90205 -17.40066 -17.09231 -16.71676 -16.32803 -16.28336 -16.24476 -15.75955 -15.62717 -15.34019 -15.22568 -14.88027 -14.66088 -14.53064 -14.46685 -14.17818 -13.82807 -13.62782 -13.38433 -13.22828 -12.93440 -12.84199 -12.65148 -12.52783 -12.43475 -12.24380 -12.10814 -11.97811 -11.95994 -11.75305 -11.63476 -11.59288 -11.38764 -11.35838 -11.16037 -10.76098 -9.77191 -9.52875 -9.35387 -9.19069 -8.29496 -6.33726 0.41686 0.54466 1.35550 1.37766 1.49976 2.36318 2.69139 2.92813 3.05487 3.17411 3.77648 3.88796 3.91651 3.97434 4.00462 4.16655 4.17665 4.18683 4.26956 4.34801 4.43248 4.46744 4.51657 4.54284 4.56508 4.61282 4.66820 4.68275 4.75628 4.79562 4.82562 4.86088 4.92162 4.93784 4.97208 5.06733 5.07765 5.09568 5.15060 5.18451 5.24833 5.38266 5.50575 5.54433 5.59447 5.65951 5.72222 5.76464 5.95804 5.99370 6.13554 6.19023 6.20654 6.30219 6.74211 7.30564 8.87487 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.017733 B = 0.002200 C = 0.002045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1578.594695 B =12724.445303 C =13687.721801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.086 4.086 3 C -0.090 4.090 4 C -0.128 4.128 5 C -0.104 4.104 6 C -0.092 4.092 7 C 0.098 3.902 8 N -0.540 5.540 9 C 0.066 3.934 10 C 0.057 3.943 11 N -0.548 5.548 12 C 0.066 3.934 13 C -0.087 4.087 14 C -0.010 4.010 15 C -0.532 4.532 16 H 0.028 0.972 17 C 0.000 4.000 18 N -0.952 5.952 19 Si 0.955 3.045 20 H -0.265 1.265 21 H -0.284 1.284 22 H -0.247 1.247 23 C 0.056 3.944 24 C 0.063 3.937 25 C -0.121 4.121 26 C -0.130 4.130 27 H 0.068 0.932 28 H 0.054 0.946 29 H 0.051 0.949 30 H 0.073 0.927 31 H 0.077 0.923 32 H 0.134 0.866 33 H 0.131 0.869 34 H 0.097 0.903 35 H 0.043 0.957 36 H 0.035 0.965 37 H 0.082 0.918 38 H 0.031 0.969 39 H 0.070 0.930 40 H 0.030 0.970 41 H 0.080 0.920 42 H 0.048 0.952 43 H 0.043 0.957 44 H 0.018 0.982 45 H 0.021 0.979 46 H 0.266 0.734 47 H 0.036 0.964 48 H 0.090 0.910 49 H 0.101 0.899 50 H 0.039 0.961 51 H 0.121 0.879 52 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.042 -3.899 -17.411 33.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.123 4.123 3 C -0.090 4.090 4 C -0.146 4.146 5 C -0.122 4.122 6 C -0.092 4.092 7 C -0.029 4.029 8 N -0.265 5.265 9 C -0.062 4.062 10 C -0.071 4.071 11 N -0.273 5.273 12 C -0.061 4.061 13 C -0.125 4.125 14 C -0.047 4.047 15 C -0.571 4.571 16 H 0.047 0.953 17 C -0.197 4.197 18 N -0.593 5.593 19 Si 0.778 3.222 20 H -0.190 1.190 21 H -0.209 1.209 22 H -0.170 1.170 23 C -0.072 4.072 24 C -0.065 4.065 25 C -0.139 4.139 26 C -0.148 4.148 27 H 0.087 0.913 28 H 0.073 0.927 29 H 0.070 0.930 30 H 0.092 0.908 31 H 0.096 0.904 32 H 0.152 0.848 33 H 0.149 0.851 34 H 0.115 0.885 35 H 0.061 0.939 36 H 0.053 0.947 37 H 0.100 0.900 38 H 0.049 0.951 39 H 0.088 0.912 40 H 0.048 0.952 41 H 0.099 0.901 42 H 0.066 0.934 43 H 0.062 0.938 44 H 0.036 0.964 45 H 0.039 0.961 46 H 0.075 0.925 47 H 0.054 0.946 48 H 0.108 0.892 49 H 0.119 0.881 50 H 0.057 0.943 51 H 0.139 0.861 52 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -27.904 -3.901 -17.322 33.074 hybrid contribution 0.990 -0.021 0.377 1.060 sum -26.914 -3.922 -16.945 32.044 Atomic orbital electron populations 1.21719 0.94083 1.02334 1.01899 1.20589 0.96664 0.91712 1.03353 1.20163 0.98682 0.97049 0.93141 1.21256 1.00178 0.94986 0.98172 1.21174 0.98270 0.94892 0.97885 1.19812 0.99688 0.96259 0.93466 1.21026 0.86575 0.93001 1.02283 1.62192 1.07347 1.22581 1.34399 1.22091 0.93428 1.00267 0.90405 1.22141 0.94959 0.89447 1.00588 1.62175 1.07673 1.22255 1.35244 1.22053 0.86532 1.01131 0.96397 1.21279 0.95173 1.00091 0.95988 1.19492 0.94090 0.96408 0.94758 1.21498 0.92299 1.47086 0.96169 0.95350 1.26090 1.00808 0.94387 0.98365 1.70084 1.15093 1.50961 1.23183 0.85588 0.77616 0.78950 0.80051 1.18958 1.20939 1.17000 1.22225 0.94991 1.00326 0.89654 1.22182 0.93770 0.88682 1.01878 1.21195 0.99598 0.95329 0.97802 1.21197 1.00370 0.94929 0.98294 0.91293 0.92698 0.93013 0.90787 0.90415 0.84785 0.85069 0.88451 0.93854 0.94653 0.89985 0.95059 0.91190 0.95181 0.90138 0.93358 0.93793 0.96378 0.96052 0.92507 0.94570 0.89175 0.88063 0.94309 0.86128 0.85306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.48 9.89 71.98 0.71 -0.76 16 2 C -0.09 -1.04 6.07 29.85 0.18 -0.86 16 3 C -0.09 -1.47 5.13 -19.86 -0.10 -1.57 16 4 C -0.13 -2.06 9.70 22.27 0.22 -1.84 16 5 C -0.10 -1.77 9.70 22.27 0.22 -1.55 16 6 C -0.09 -1.67 4.89 -19.87 -0.10 -1.77 16 7 C 0.10 1.66 5.12 85.56 0.44 2.09 16 8 N -0.54 -11.17 4.70 -900.28 -4.23 -15.40 16 9 C 0.07 1.59 5.25 86.31 0.45 2.04 16 10 C 0.06 1.62 5.41 86.31 0.47 2.09 16 11 N -0.55 -15.87 4.71 -895.73 -4.22 -20.08 16 12 C 0.07 2.16 4.96 86.30 0.43 2.59 16 13 C -0.09 -3.58 5.09 30.59 0.16 -3.42 16 14 C -0.01 -0.46 4.04 29.85 0.12 -0.34 16 15 C -0.53 -31.81 9.66 25.60 0.25 -31.56 16 16 H 0.03 1.87 7.99 -2.91 -0.02 1.84 16 17 C 0.00 -0.01 5.47 84.65 0.46 0.45 16 18 N -0.95 -61.15 13.96 21.45 0.30 -60.85 16 19 Si 0.96 45.12 27.47 68.60 1.88 47.01 16 20 H -0.26 -11.92 7.11 99.48 0.71 -11.22 16 21 H -0.28 -13.11 7.11 99.48 0.71 -12.40 16 22 H -0.25 -10.79 6.54 99.48 0.65 -10.14 16 23 C 0.06 1.27 5.61 86.31 0.48 1.76 16 24 C 0.06 1.19 5.61 86.31 0.48 1.68 16 25 C -0.12 -2.23 7.92 22.27 0.18 -2.05 16 26 C -0.13 -2.26 9.70 22.27 0.22 -2.05 16 27 H 0.07 0.55 8.14 -2.39 -0.02 0.53 16 28 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 29 H 0.05 0.57 8.14 -2.38 -0.02 0.55 16 30 H 0.07 0.86 8.09 -2.39 -0.02 0.84 16 31 H 0.08 0.83 8.08 -2.39 -0.02 0.81 16 32 H 0.13 1.65 8.06 -2.91 -0.02 1.63 16 33 H 0.13 1.87 8.06 -2.91 -0.02 1.85 16 34 H 0.10 1.32 7.97 -2.39 -0.02 1.31 16 35 H 0.04 0.73 8.06 -2.39 -0.02 0.71 16 36 H 0.04 0.88 8.14 -2.39 -0.02 0.87 16 37 H 0.08 1.93 5.95 -2.39 -0.01 1.92 16 38 H 0.03 0.93 8.14 -2.38 -0.02 0.91 16 39 H 0.07 2.20 6.34 -2.39 -0.02 2.18 16 40 H 0.03 0.97 8.12 -2.39 -0.02 0.95 16 41 H 0.08 2.44 8.03 -2.39 -0.02 2.42 16 42 H 0.05 2.07 8.14 -2.38 -0.02 2.05 16 43 H 0.04 1.85 6.49 -2.39 -0.02 1.83 16 44 H 0.02 0.85 7.20 -2.39 -0.02 0.83 16 45 H 0.02 0.98 7.57 -2.39 -0.02 0.96 16 46 H 0.27 15.87 8.31 -92.71 -0.77 15.10 16 47 H 0.04 0.85 8.14 -2.39 -0.02 0.83 16 48 H 0.09 1.83 8.07 -2.39 -0.02 1.81 16 49 H 0.10 1.45 8.07 -2.39 -0.02 1.43 16 50 H 0.04 0.78 8.14 -2.39 -0.02 0.77 16 51 H 0.12 2.09 7.99 -2.91 -0.02 2.07 16 52 H 0.13 1.89 8.06 -2.91 -0.02 1.86 16 Total: -1.00 -68.52 402.45 -0.22 -68.74 By element: Atomic # 1 Polarization: 14.88 SS G_CDS: 0.79 Total: 15.67 kcal Atomic # 6 Polarization: -40.33 SS G_CDS: 5.26 Total: -35.08 kcal Atomic # 7 Polarization: -88.18 SS G_CDS: -8.15 Total: -96.34 kcal Atomic # 14 Polarization: 45.12 SS G_CDS: 1.88 Total: 47.01 kcal Total: -68.52 -0.22 -68.74 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000880244257.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.619 kcal (2) G-P(sol) polarization free energy of solvation -68.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.220 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.736 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.117 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds