Wall clock time and date at job start Tue Mar 31 2020 11:38:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08998 * 109.47045 * 2 1 4 4 C 1.53009 * 109.46903 * 240.00231 * 2 1 3 5 5 C 1.50691 * 109.47091 * 64.99799 * 4 2 1 6 6 H 1.08005 * 120.00344 * 359.97438 * 5 4 2 7 7 C 1.37874 * 120.00152 * 179.97438 * 5 4 2 8 8 N 1.31522 * 119.99837 * 359.97438 * 7 5 4 9 9 Si 1.86795 * 120.00414 * 179.97438 * 7 5 4 10 10 H 1.48504 * 109.46993 * 59.99967 * 9 7 5 11 11 H 1.48496 * 109.47378 * 179.97438 * 9 7 5 12 12 H 1.48499 * 109.47284 * 300.00106 * 9 7 5 13 13 C 1.53000 * 109.47208 * 120.00175 * 2 1 3 14 14 N 1.46896 * 109.46991 * 294.99657 * 13 2 1 15 15 C 1.46958 * 111.00309 * 293.79695 * 14 13 2 16 16 C 1.53053 * 109.36305 * 176.80901 * 15 14 13 17 17 N 1.46960 * 109.36248 * 58.40691 * 16 15 14 18 18 C 1.46896 * 110.99784 * 176.80634 * 17 16 15 19 19 H 1.08997 * 109.46650 * 173.54992 * 18 17 16 20 20 C 1.53000 * 109.47317 * 53.55341 * 18 17 16 21 21 C 1.50700 * 109.47498 * 293.55152 * 18 17 16 22 22 C 1.38231 * 119.99739 * 326.18666 * 21 18 17 23 23 C 1.38245 * 119.99776 * 179.76773 * 22 21 18 24 24 C 1.38231 * 120.00005 * 0.47834 * 23 22 21 25 25 C 1.38239 * 119.99737 * 359.79490 * 24 23 22 26 26 C 1.38231 * 120.00366 * 359.95189 * 25 24 23 27 27 C 1.46949 * 110.87868 * 300.67884 * 17 16 15 28 28 C 1.46960 * 110.99784 * 170.00046 * 14 13 2 29 29 H 1.08999 * 109.47579 * 59.99615 * 1 2 3 30 30 H 1.08998 * 109.47045 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47007 * 299.99794 * 1 2 3 32 32 H 1.09003 * 109.46615 * 184.99888 * 4 2 1 33 33 H 1.08999 * 109.46911 * 304.99886 * 4 2 1 34 34 H 0.96997 * 120.00023 * 180.02562 * 8 7 5 35 35 H 1.09000 * 109.47086 * 55.00260 * 13 2 1 36 36 H 1.09002 * 109.46906 * 175.00087 * 13 2 1 37 37 H 1.08987 * 109.49110 * 296.78283 * 15 14 13 38 38 H 1.09002 * 109.48031 * 56.85089 * 15 14 13 39 39 H 1.08994 * 109.48986 * 298.43831 * 16 15 14 40 40 H 1.08996 * 109.50223 * 178.38306 * 16 15 14 41 41 H 1.09005 * 109.46804 * 59.99150 * 20 18 17 42 42 H 1.08995 * 109.47680 * 179.97438 * 20 18 17 43 43 H 1.09005 * 109.46784 * 300.00256 * 20 18 17 44 44 H 1.08000 * 120.00308 * 359.97438 * 22 21 18 45 45 H 1.07997 * 120.00099 * 180.24848 * 23 22 21 46 46 H 1.07996 * 120.00067 * 179.77185 * 24 23 22 47 47 H 1.08004 * 119.99942 * 179.97438 * 25 24 23 48 48 H 1.07994 * 120.00225 * 179.97438 * 26 25 24 49 49 H 1.09000 * 109.48973 * 299.34871 * 27 17 16 50 50 H 1.09003 * 109.50727 * 179.30142 * 27 17 16 51 51 H 1.08995 * 109.49086 * 303.16021 * 28 14 13 52 52 H 1.09003 * 109.48908 * 63.22261 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7212 -1.2494 5 6 1.6412 0.0570 -2.4766 6 1 1.0798 0.9742 -2.3757 7 6 1.9930 -0.4016 -3.7283 8 7 2.6771 -1.5182 -3.8512 9 14 1.4982 0.5627 -5.2496 10 1 2.0893 1.9236 -5.1870 11 1 1.9943 -0.1366 -6.4621 12 1 0.0182 0.6682 -5.3092 13 6 2.0400 -0.7213 1.2492 14 7 1.6514 0.0374 2.4456 15 6 2.3373 1.3363 2.4913 16 6 1.8467 2.1266 3.7068 17 7 2.1079 1.3531 4.9287 18 6 1.7194 2.1118 6.1251 19 1 1.8153 1.4762 7.0053 20 6 0.2678 2.5750 5.9862 21 6 2.6179 3.3127 6.2723 22 6 3.9417 3.2374 5.8814 23 6 4.7647 4.3405 6.0120 24 6 4.2664 5.5156 6.5425 25 6 2.9440 5.5891 6.9386 26 6 2.1197 4.4878 6.8032 27 6 1.4222 0.0542 4.8829 28 6 1.9127 -0.7361 3.6675 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 3.1263 -0.7994 -1.2057 33 1 1.6053 -1.7198 -1.2952 34 1 2.9250 -1.8407 -4.7317 35 1 1.6054 -1.7199 1.2951 36 1 3.1263 -0.7995 1.2055 37 1 3.4125 1.1772 2.5708 38 1 2.1182 1.8953 1.5816 39 1 0.7762 2.3093 3.6139 40 1 2.3749 3.0786 3.7591 41 1 -0.3821 1.7063 5.8797 42 1 -0.0207 3.1375 6.8741 43 1 0.1719 3.2105 5.1058 44 1 4.3321 2.3179 5.4710 45 1 5.7979 4.2829 5.7029 46 1 4.9103 6.3762 6.6480 47 1 2.5548 6.5071 7.3536 48 1 1.0867 4.5450 7.1131 49 1 0.3468 0.2133 4.8035 50 1 1.6408 -0.5050 5.7927 51 1 1.3843 -1.6880 3.6153 52 1 2.9832 -0.9188 3.7604 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000895551273.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:38:09 Heat of formation + Delta-G solvation = 26.182197 kcal Electronic energy + Delta-G solvation = -26932.901863 eV Core-core repulsion = 23510.669245 eV Total energy + Delta-G solvation = -3422.232618 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.28752 -38.81084 -36.73639 -34.48196 -32.48878 -31.52232 -31.09270 -30.76617 -29.11743 -27.23499 -26.51462 -24.74848 -23.67922 -23.46842 -22.44908 -22.13424 -20.63801 -19.27976 -18.75945 -17.19727 -16.54921 -16.08404 -15.62096 -15.05291 -14.94991 -14.77508 -14.65217 -14.52828 -14.31123 -13.96372 -13.74193 -13.44784 -13.31301 -13.02492 -12.59552 -12.36887 -12.26123 -12.05354 -11.97116 -11.87112 -11.50953 -11.28883 -11.16155 -11.11508 -10.98435 -10.82546 -10.78332 -10.66788 -10.55922 -10.26038 -10.19005 -9.55732 -9.09652 -9.04657 -8.93322 -8.84050 -8.42002 -8.30015 -7.95541 -5.95163 -3.96172 1.19284 1.28071 3.35889 3.40176 3.42719 3.59326 3.78999 4.18514 4.45951 4.50539 4.73545 4.82825 4.84988 4.94774 5.03072 5.10230 5.14428 5.25072 5.26714 5.35693 5.40528 5.44668 5.46554 5.50513 5.59675 5.67310 5.77074 5.82948 5.84102 5.89330 5.93288 5.96589 6.01879 6.11623 6.18695 6.21442 6.31985 6.39767 6.42538 6.46362 6.58470 6.72968 6.85639 6.95405 6.96833 7.06528 7.17840 7.24155 7.43410 7.48412 7.72344 7.88778 8.05280 8.49483 9.10037 9.66987 11.16384 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.017946 B = 0.002604 C = 0.002445 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1559.824790 B =10751.789504 C =11447.333407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.080 4.080 3 H 0.055 0.945 4 C 0.028 3.972 5 C -0.512 4.512 6 H 0.055 0.945 7 C 0.055 3.945 8 N -0.898 5.898 9 Si 0.890 3.110 10 H -0.278 1.278 11 H -0.288 1.288 12 H -0.277 1.277 13 C 0.062 3.938 14 N -0.535 5.535 15 C 0.056 3.944 16 C 0.057 3.943 17 N -0.530 5.530 18 C 0.120 3.880 19 H 0.091 0.909 20 C -0.186 4.186 21 C -0.076 4.076 22 C -0.092 4.092 23 C -0.125 4.125 24 C -0.125 4.125 25 C -0.125 4.125 26 C -0.120 4.120 27 C 0.058 3.942 28 C 0.057 3.943 29 H 0.052 0.948 30 H 0.038 0.962 31 H 0.040 0.960 32 H 0.012 0.988 33 H 0.015 0.985 34 H 0.260 0.740 35 H 0.068 0.932 36 H 0.028 0.972 37 H 0.037 0.963 38 H 0.085 0.915 39 H 0.046 0.954 40 H 0.076 0.924 41 H 0.061 0.939 42 H 0.062 0.938 43 H 0.065 0.935 44 H 0.132 0.868 45 H 0.119 0.881 46 H 0.117 0.883 47 H 0.118 0.882 48 H 0.122 0.878 49 H 0.045 0.955 50 H 0.074 0.926 51 H 0.076 0.924 52 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.529 9.468 24.945 26.687 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.099 4.099 3 H 0.073 0.927 4 C -0.010 4.010 5 C -0.550 4.550 6 H 0.073 0.927 7 C -0.145 4.145 8 N -0.537 5.537 9 Si 0.718 3.282 10 H -0.203 1.203 11 H -0.214 1.214 12 H -0.203 1.203 13 C -0.065 4.065 14 N -0.260 5.260 15 C -0.072 4.072 16 C -0.071 4.071 17 N -0.254 5.254 18 C 0.012 3.988 19 H 0.109 0.891 20 C -0.245 4.245 21 C -0.077 4.077 22 C -0.110 4.110 23 C -0.143 4.143 24 C -0.143 4.143 25 C -0.143 4.143 26 C -0.139 4.139 27 C -0.070 4.070 28 C -0.072 4.072 29 H 0.071 0.929 30 H 0.057 0.943 31 H 0.059 0.941 32 H 0.030 0.970 33 H 0.034 0.966 34 H 0.069 0.931 35 H 0.086 0.914 36 H 0.047 0.953 37 H 0.055 0.945 38 H 0.104 0.896 39 H 0.064 0.936 40 H 0.094 0.906 41 H 0.080 0.920 42 H 0.081 0.919 43 H 0.084 0.916 44 H 0.150 0.850 45 H 0.138 0.862 46 H 0.135 0.865 47 H 0.136 0.864 48 H 0.140 0.860 49 H 0.063 0.937 50 H 0.092 0.908 51 H 0.094 0.906 52 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -0.449 9.322 24.801 26.499 hybrid contribution -0.159 0.480 -0.957 1.082 sum -0.608 9.802 23.844 25.788 Atomic orbital electron populations 1.21564 0.95842 1.00422 1.00007 1.21215 0.95864 0.99031 0.93795 0.92661 1.19118 0.95880 0.95534 0.90466 1.21195 1.34552 1.08264 0.91005 0.92673 1.25017 0.95363 0.95098 0.99059 1.69959 1.39054 1.21270 1.23442 0.86700 0.78890 0.80119 0.82536 1.20320 1.21390 1.20288 1.22294 0.97620 0.97109 0.89498 1.62205 1.57923 1.03830 1.02044 1.22177 0.96223 0.91103 0.97732 1.22211 0.99811 0.96427 0.88655 1.62348 1.57456 1.03765 1.01795 1.20510 0.91674 0.92632 0.94001 0.89144 1.22517 0.97127 1.02153 1.02662 1.19799 0.94556 0.94367 0.98966 1.21135 0.92995 0.98920 0.97977 1.21220 0.99913 0.93395 0.99761 1.21147 0.95719 0.97955 0.99469 1.21082 0.94094 0.98382 1.00752 1.21106 0.99827 0.92747 1.00173 1.22159 0.96888 0.89858 0.98065 1.22112 0.99213 0.96394 0.89463 0.92871 0.94274 0.94092 0.96978 0.96641 0.93070 0.91392 0.95327 0.94492 0.89639 0.93561 0.90595 0.92037 0.91883 0.91638 0.84998 0.86247 0.86472 0.86398 0.86049 0.93712 0.90772 0.90562 0.94451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.37 8.89 37.16 0.33 -2.04 16 2 C -0.08 -1.65 2.26 -90.62 -0.21 -1.86 16 3 H 0.06 1.16 6.28 -51.93 -0.33 0.83 16 4 C 0.03 0.71 4.45 -27.88 -0.12 0.59 16 5 C -0.51 -14.43 8.41 -34.45 -0.29 -14.72 16 6 H 0.06 1.52 7.06 -52.48 -0.37 1.15 16 7 C 0.06 1.59 5.46 -17.82 -0.10 1.50 16 8 N -0.90 -27.18 13.29 55.43 0.74 -26.44 16 9 Si 0.89 21.86 29.54 -169.99 -5.02 16.84 16 10 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 11 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 12 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 13 C 0.06 1.09 4.35 -3.83 -0.02 1.07 16 14 N -0.54 -7.96 4.16 -234.47 -0.98 -8.94 16 15 C 0.06 0.80 5.42 -3.76 -0.02 0.78 16 16 C 0.06 0.68 4.64 -3.76 -0.02 0.67 16 17 N -0.53 -5.66 3.74 -227.89 -0.85 -6.51 16 18 C 0.12 1.10 2.73 -68.87 -0.19 0.91 16 19 H 0.09 0.78 8.02 -51.93 -0.42 0.37 16 20 C -0.19 -1.56 7.63 37.16 0.28 -1.28 16 21 C -0.08 -0.74 4.60 -104.62 -0.48 -1.22 16 22 C -0.09 -0.94 8.56 -39.58 -0.34 -1.28 16 23 C -0.12 -1.17 10.05 -39.58 -0.40 -1.57 16 24 C -0.12 -1.09 10.05 -39.58 -0.40 -1.49 16 25 C -0.13 -1.07 10.05 -39.58 -0.40 -1.47 16 26 C -0.12 -1.07 9.14 -39.58 -0.36 -1.43 16 27 C 0.06 0.62 5.34 -3.77 -0.02 0.60 16 28 C 0.06 0.71 5.61 -3.77 -0.02 0.69 16 29 H 0.05 1.11 6.95 -51.93 -0.36 0.75 16 30 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.04 0.73 7.75 -51.93 -0.40 0.32 16 32 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 33 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.26 7.45 8.31 -40.82 -0.34 7.12 16 35 H 0.07 1.19 8.03 -51.93 -0.42 0.77 16 36 H 0.03 0.52 8.12 -51.93 -0.42 0.10 16 37 H 0.04 0.55 8.14 -51.94 -0.42 0.13 16 38 H 0.09 1.32 6.25 -51.93 -0.32 1.00 16 39 H 0.05 0.58 6.41 -51.93 -0.33 0.25 16 40 H 0.08 0.92 6.71 -51.93 -0.35 0.57 16 41 H 0.06 0.53 6.77 -51.93 -0.35 0.18 16 42 H 0.06 0.44 6.55 -51.93 -0.34 0.10 16 43 H 0.06 0.62 6.40 -51.93 -0.33 0.29 16 44 H 0.13 1.42 7.52 -52.49 -0.39 1.02 16 45 H 0.12 0.95 8.06 -52.49 -0.42 0.52 16 46 H 0.12 0.80 8.06 -52.49 -0.42 0.38 16 47 H 0.12 0.78 8.06 -52.48 -0.42 0.35 16 48 H 0.12 0.90 6.08 -52.49 -0.32 0.58 16 49 H 0.04 0.49 6.77 -51.93 -0.35 0.14 16 50 H 0.07 0.67 8.07 -51.93 -0.42 0.25 16 51 H 0.08 0.91 8.07 -51.93 -0.42 0.49 16 52 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 LS Contribution 390.63 15.07 5.89 5.89 Total: -1.00 -29.82 390.63 -12.15 -41.97 By element: Atomic # 1 Polarization: 7.91 SS G_CDS: -9.16 Total: -1.25 kcal Atomic # 6 Polarization: -18.80 SS G_CDS: -2.76 Total: -21.56 kcal Atomic # 7 Polarization: -40.79 SS G_CDS: -1.09 Total: -41.89 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -29.82 -12.15 -41.97 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000895551273.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.155 kcal (2) G-P(sol) polarization free energy of solvation -29.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.333 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.151 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.973 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.182 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds