Wall clock time and date at job start Tue Mar 31 2020 11:38:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08998 * 109.47045 * 2 1 4 4 C 1.53009 * 109.46903 * 240.00231 * 2 1 3 5 5 C 1.50691 * 109.47091 * 64.99799 * 4 2 1 6 6 H 1.08005 * 120.00344 * 359.97438 * 5 4 2 7 7 C 1.37874 * 120.00152 * 179.97438 * 5 4 2 8 8 N 1.31522 * 119.99837 * 359.97438 * 7 5 4 9 9 Si 1.86795 * 120.00414 * 179.97438 * 7 5 4 10 10 H 1.48504 * 109.46993 * 59.99967 * 9 7 5 11 11 H 1.48496 * 109.47378 * 179.97438 * 9 7 5 12 12 H 1.48499 * 109.47284 * 300.00106 * 9 7 5 13 13 C 1.53000 * 109.47208 * 120.00175 * 2 1 3 14 14 N 1.46896 * 109.46991 * 294.99657 * 13 2 1 15 15 C 1.46958 * 111.00309 * 293.79695 * 14 13 2 16 16 C 1.53053 * 109.36305 * 176.80901 * 15 14 13 17 17 N 1.46960 * 109.36248 * 58.40691 * 16 15 14 18 18 C 1.46896 * 110.99784 * 176.80634 * 17 16 15 19 19 H 1.08997 * 109.46650 * 173.54992 * 18 17 16 20 20 C 1.53000 * 109.47317 * 53.55341 * 18 17 16 21 21 C 1.50700 * 109.47498 * 293.55152 * 18 17 16 22 22 C 1.38231 * 119.99739 * 326.18666 * 21 18 17 23 23 C 1.38245 * 119.99776 * 179.76773 * 22 21 18 24 24 C 1.38231 * 120.00005 * 0.47834 * 23 22 21 25 25 C 1.38239 * 119.99737 * 359.79490 * 24 23 22 26 26 C 1.38231 * 120.00366 * 359.95189 * 25 24 23 27 27 C 1.46949 * 110.87868 * 300.67884 * 17 16 15 28 28 C 1.46960 * 110.99784 * 170.00046 * 14 13 2 29 29 H 1.08999 * 109.47579 * 59.99615 * 1 2 3 30 30 H 1.08998 * 109.47045 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47007 * 299.99794 * 1 2 3 32 32 H 1.09003 * 109.46615 * 184.99888 * 4 2 1 33 33 H 1.08999 * 109.46911 * 304.99886 * 4 2 1 34 34 H 0.96997 * 120.00023 * 180.02562 * 8 7 5 35 35 H 1.09000 * 109.47086 * 55.00260 * 13 2 1 36 36 H 1.09002 * 109.46906 * 175.00087 * 13 2 1 37 37 H 1.08987 * 109.49110 * 296.78283 * 15 14 13 38 38 H 1.09002 * 109.48031 * 56.85089 * 15 14 13 39 39 H 1.08994 * 109.48986 * 298.43831 * 16 15 14 40 40 H 1.08996 * 109.50223 * 178.38306 * 16 15 14 41 41 H 1.09005 * 109.46804 * 59.99150 * 20 18 17 42 42 H 1.08995 * 109.47680 * 179.97438 * 20 18 17 43 43 H 1.09005 * 109.46784 * 300.00256 * 20 18 17 44 44 H 1.08000 * 120.00308 * 359.97438 * 22 21 18 45 45 H 1.07997 * 120.00099 * 180.24848 * 23 22 21 46 46 H 1.07996 * 120.00067 * 179.77185 * 24 23 22 47 47 H 1.08004 * 119.99942 * 179.97438 * 25 24 23 48 48 H 1.07994 * 120.00225 * 179.97438 * 26 25 24 49 49 H 1.09000 * 109.48973 * 299.34871 * 27 17 16 50 50 H 1.09003 * 109.50727 * 179.30142 * 27 17 16 51 51 H 1.08995 * 109.49086 * 303.16021 * 28 14 13 52 52 H 1.09003 * 109.48908 * 63.22261 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7212 -1.2494 5 6 1.6412 0.0570 -2.4766 6 1 1.0798 0.9742 -2.3757 7 6 1.9930 -0.4016 -3.7283 8 7 2.6771 -1.5182 -3.8512 9 14 1.4982 0.5627 -5.2496 10 1 2.0893 1.9236 -5.1870 11 1 1.9943 -0.1366 -6.4621 12 1 0.0182 0.6682 -5.3092 13 6 2.0400 -0.7213 1.2492 14 7 1.6514 0.0374 2.4456 15 6 2.3373 1.3363 2.4913 16 6 1.8467 2.1266 3.7068 17 7 2.1079 1.3531 4.9287 18 6 1.7194 2.1118 6.1251 19 1 1.8153 1.4762 7.0053 20 6 0.2678 2.5750 5.9862 21 6 2.6179 3.3127 6.2723 22 6 3.9417 3.2374 5.8814 23 6 4.7647 4.3405 6.0120 24 6 4.2664 5.5156 6.5425 25 6 2.9440 5.5891 6.9386 26 6 2.1197 4.4878 6.8032 27 6 1.4222 0.0542 4.8829 28 6 1.9127 -0.7361 3.6675 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 3.1263 -0.7994 -1.2057 33 1 1.6053 -1.7198 -1.2952 34 1 2.9250 -1.8407 -4.7317 35 1 1.6054 -1.7199 1.2951 36 1 3.1263 -0.7995 1.2055 37 1 3.4125 1.1772 2.5708 38 1 2.1182 1.8953 1.5816 39 1 0.7762 2.3093 3.6139 40 1 2.3749 3.0786 3.7591 41 1 -0.3821 1.7063 5.8797 42 1 -0.0207 3.1375 6.8741 43 1 0.1719 3.2105 5.1058 44 1 4.3321 2.3179 5.4710 45 1 5.7979 4.2829 5.7029 46 1 4.9103 6.3762 6.6480 47 1 2.5548 6.5071 7.3536 48 1 1.0867 4.5450 7.1131 49 1 0.3468 0.2133 4.8035 50 1 1.6408 -0.5050 5.7927 51 1 1.3843 -1.6880 3.6153 52 1 2.9832 -0.9188 3.7604 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000895551273.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:38:08 Heat of formation + Delta-G solvation = 10.791937 kcal Electronic energy + Delta-G solvation = -26933.569235 eV Core-core repulsion = 23510.669245 eV Total energy + Delta-G solvation = -3422.899990 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.12144 -39.74918 -37.94461 -36.00346 -34.23354 -32.69866 -31.96827 -31.62559 -29.93050 -28.93280 -27.91412 -26.12586 -24.79104 -24.61694 -23.62134 -23.12117 -21.47190 -20.56439 -20.11097 -18.52732 -17.88380 -17.27569 -16.55047 -16.44190 -16.05958 -15.81338 -15.73558 -15.71134 -15.42316 -15.20662 -14.68422 -14.50364 -14.23431 -14.21663 -14.02461 -13.72276 -13.36111 -13.24031 -13.13517 -12.86588 -12.75381 -12.68369 -12.65371 -12.45082 -12.27949 -12.12787 -12.05979 -11.86637 -11.84541 -11.63303 -11.46495 -11.32994 -11.04783 -10.84699 -10.52355 -9.72943 -9.53416 -9.33433 -9.14648 -8.17141 -6.26311 0.51332 0.59420 1.39750 1.42567 1.50224 2.41970 2.83480 2.97332 3.02966 3.16098 3.74541 3.91457 3.98669 4.06942 4.19659 4.23159 4.26732 4.30796 4.33576 4.35428 4.42725 4.46734 4.53035 4.54297 4.60217 4.65055 4.79040 4.80824 4.86452 4.88152 4.90052 4.93066 5.00205 5.02223 5.08472 5.13120 5.20790 5.25949 5.28084 5.31742 5.46970 5.50219 5.55477 5.64625 5.71562 5.73004 5.80658 5.89114 6.04264 6.06012 6.18834 6.24533 6.26083 6.33092 6.89329 7.41804 8.94805 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.017946 B = 0.002604 C = 0.002445 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1559.824790 B =10751.789504 C =11447.333407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.070 4.070 3 H 0.051 0.949 4 C 0.034 3.966 5 C -0.529 4.529 6 H 0.060 0.940 7 C -0.002 4.002 8 N -0.936 5.936 9 Si 0.960 3.040 10 H -0.268 1.268 11 H -0.284 1.284 12 H -0.267 1.267 13 C 0.074 3.926 14 N -0.534 5.534 15 C 0.057 3.943 16 C 0.072 3.928 17 N -0.535 5.535 18 C 0.123 3.877 19 H 0.100 0.900 20 C -0.180 4.180 21 C -0.085 4.085 22 C -0.108 4.108 23 C -0.137 4.137 24 C -0.132 4.132 25 C -0.130 4.130 26 C -0.125 4.125 27 C 0.064 3.936 28 C 0.055 3.945 29 H 0.036 0.964 30 H 0.037 0.963 31 H 0.063 0.937 32 H -0.017 1.017 33 H -0.009 1.009 34 H 0.262 0.738 35 H 0.069 0.931 36 H 0.015 0.985 37 H 0.026 0.974 38 H 0.070 0.930 39 H 0.044 0.956 40 H 0.074 0.926 41 H 0.061 0.939 42 H 0.079 0.921 43 H 0.053 0.947 44 H 0.120 0.880 45 H 0.127 0.873 46 H 0.135 0.865 47 H 0.139 0.861 48 H 0.138 0.862 49 H 0.046 0.954 50 H 0.096 0.904 51 H 0.085 0.915 52 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.799 10.999 26.495 28.743 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.089 4.089 3 H 0.069 0.931 4 C -0.004 4.004 5 C -0.567 4.567 6 H 0.078 0.922 7 C -0.199 4.199 8 N -0.576 5.576 9 Si 0.785 3.215 10 H -0.193 1.193 11 H -0.210 1.210 12 H -0.192 1.192 13 C -0.054 4.054 14 N -0.258 5.258 15 C -0.071 4.071 16 C -0.057 4.057 17 N -0.259 5.259 18 C 0.016 3.984 19 H 0.118 0.882 20 C -0.239 4.239 21 C -0.086 4.086 22 C -0.126 4.126 23 C -0.155 4.155 24 C -0.150 4.150 25 C -0.148 4.148 26 C -0.143 4.143 27 C -0.063 4.063 28 C -0.073 4.073 29 H 0.055 0.945 30 H 0.056 0.944 31 H 0.082 0.918 32 H 0.001 0.999 33 H 0.009 0.991 34 H 0.071 0.929 35 H 0.088 0.912 36 H 0.034 0.966 37 H 0.045 0.955 38 H 0.088 0.912 39 H 0.062 0.938 40 H 0.093 0.907 41 H 0.080 0.920 42 H 0.098 0.902 43 H 0.072 0.928 44 H 0.138 0.862 45 H 0.145 0.855 46 H 0.153 0.847 47 H 0.157 0.843 48 H 0.155 0.845 49 H 0.064 0.936 50 H 0.114 0.886 51 H 0.103 0.897 52 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -1.726 10.863 26.376 28.578 hybrid contribution 0.291 0.002 -1.384 1.414 sum -1.436 10.866 24.992 27.290 Atomic orbital electron populations 1.21437 0.94609 1.00370 1.00241 1.21007 0.96694 0.98293 0.92920 0.93081 1.19001 0.93915 0.94723 0.92742 1.21593 1.34431 1.08568 0.92079 0.92202 1.25948 0.95258 0.96098 1.02620 1.70098 1.40231 1.22979 1.24328 0.85575 0.78969 0.78774 0.78200 1.19299 1.20980 1.19176 1.22009 0.96631 0.97071 0.89650 1.62177 1.57732 1.03971 1.01965 1.22148 0.95659 0.90933 0.98354 1.21989 0.99343 0.95994 0.88333 1.62312 1.57832 1.03929 1.01793 1.20537 0.92089 0.92497 0.93327 0.88184 1.22458 0.96356 1.02120 1.02925 1.19903 0.94392 0.94981 0.99317 1.21136 0.93662 0.98876 0.98932 1.21413 1.00418 0.93635 1.00045 1.21425 0.96310 0.98235 0.99025 1.21406 0.94002 0.99143 1.00229 1.21333 1.00699 0.92462 0.99839 1.22138 0.96721 0.89673 0.97808 1.22216 0.99116 0.96922 0.89029 0.94472 0.94430 0.91840 0.99866 0.99092 0.92939 0.91214 0.96633 0.95544 0.91164 0.93772 0.90732 0.92009 0.90206 0.92774 0.86166 0.85488 0.84717 0.84322 0.84469 0.93608 0.88590 0.89660 0.95094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.24 8.89 71.98 0.64 -3.60 16 2 C -0.07 -2.95 2.26 -10.79 -0.02 -2.97 16 3 H 0.05 2.18 6.28 -2.39 -0.02 2.17 16 4 C 0.03 1.81 4.45 29.85 0.13 1.94 16 5 C -0.53 -30.35 8.41 25.60 0.22 -30.13 16 6 H 0.06 3.31 7.06 -2.91 -0.02 3.29 16 7 C 0.00 -0.12 5.46 84.65 0.46 0.34 16 8 N -0.94 -57.90 13.29 21.45 0.28 -57.62 16 9 Si 0.96 44.99 29.54 68.60 2.03 47.02 16 10 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 11 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 12 H -0.27 -11.99 7.11 99.48 0.71 -11.29 16 13 C 0.07 2.64 4.35 86.30 0.38 3.02 16 14 N -0.53 -15.59 4.16 -895.73 -3.73 -19.32 16 15 C 0.06 1.64 5.42 86.31 0.47 2.10 16 16 C 0.07 1.66 4.64 86.31 0.40 2.06 16 17 N -0.53 -10.67 3.74 -874.90 -3.27 -13.94 16 18 C 0.12 2.02 2.73 44.17 0.12 2.14 16 19 H 0.10 1.48 8.02 -2.39 -0.02 1.46 16 20 C -0.18 -2.59 7.63 71.98 0.55 -2.04 16 21 C -0.09 -1.53 4.60 -19.87 -0.09 -1.63 16 22 C -0.11 -2.15 8.56 22.27 0.19 -1.95 16 23 C -0.14 -2.49 10.05 22.27 0.22 -2.26 16 24 C -0.13 -2.10 10.05 22.27 0.22 -1.87 16 25 C -0.13 -1.94 10.05 22.27 0.22 -1.72 16 26 C -0.13 -1.96 9.14 22.27 0.20 -1.76 16 27 C 0.06 1.23 5.34 86.31 0.46 1.69 16 28 C 0.06 1.32 5.61 86.31 0.48 1.80 16 29 H 0.04 1.54 6.95 -2.39 -0.02 1.52 16 30 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 31 H 0.06 2.17 7.75 -2.39 -0.02 2.15 16 32 H -0.02 -1.00 8.14 -2.39 -0.02 -1.02 16 33 H -0.01 -0.54 8.14 -2.39 -0.02 -0.56 16 34 H 0.26 15.28 8.31 -92.71 -0.77 14.51 16 35 H 0.07 2.45 8.03 -2.39 -0.02 2.43 16 36 H 0.02 0.59 8.12 -2.39 -0.02 0.57 16 37 H 0.03 0.80 8.14 -2.39 -0.02 0.78 16 38 H 0.07 2.20 6.25 -2.39 -0.01 2.19 16 39 H 0.04 1.06 6.41 -2.39 -0.02 1.04 16 40 H 0.07 1.77 6.71 -2.39 -0.02 1.75 16 41 H 0.06 0.90 6.77 -2.38 -0.02 0.88 16 42 H 0.08 0.88 6.55 -2.39 -0.02 0.86 16 43 H 0.05 0.91 6.40 -2.38 -0.02 0.90 16 44 H 0.12 2.61 7.52 -2.91 -0.02 2.58 16 45 H 0.13 1.97 8.06 -2.91 -0.02 1.95 16 46 H 0.13 1.58 8.06 -2.91 -0.02 1.55 16 47 H 0.14 1.43 8.06 -2.91 -0.02 1.41 16 48 H 0.14 1.64 6.08 -2.91 -0.02 1.62 16 49 H 0.05 0.89 6.77 -2.39 -0.02 0.88 16 50 H 0.10 1.46 8.07 -2.39 -0.02 1.44 16 51 H 0.09 1.89 8.07 -2.39 -0.02 1.87 16 52 H 0.03 0.79 8.14 -2.39 -0.02 0.77 16 Total: -1.00 -64.75 390.63 1.43 -63.32 By element: Atomic # 1 Polarization: 14.53 SS G_CDS: 0.87 Total: 15.40 kcal Atomic # 6 Polarization: -40.10 SS G_CDS: 5.26 Total: -34.85 kcal Atomic # 7 Polarization: -84.17 SS G_CDS: -6.71 Total: -90.88 kcal Atomic # 14 Polarization: 44.99 SS G_CDS: 2.03 Total: 47.02 kcal Total: -64.75 1.43 -63.32 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000895551273.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.109 kcal (2) G-P(sol) polarization free energy of solvation -64.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.357 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.317 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.792 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds