Wall clock time and date at job start Tue Mar 31 2020 11:38:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09004 * 109.46983 * 2 1 4 4 C 1.52997 * 109.46850 * 240.00061 * 2 1 3 5 5 C 1.50697 * 109.47338 * 65.00020 * 4 2 1 6 6 H 1.07996 * 119.99983 * 0.02562 * 5 4 2 7 7 C 1.37881 * 119.99656 * 179.97438 * 5 4 2 8 8 N 1.31515 * 119.99597 * 179.97438 * 7 5 4 9 9 Si 1.86793 * 120.00203 * 0.02562 * 7 5 4 10 10 H 1.48504 * 109.47365 * 90.00306 * 9 7 5 11 11 H 1.48503 * 109.47069 * 209.99851 * 9 7 5 12 12 H 1.48500 * 109.47164 * 329.99898 * 9 7 5 13 13 C 1.53003 * 109.47210 * 119.99733 * 2 1 3 14 14 N 1.46901 * 109.47236 * 297.74132 * 13 2 1 15 15 C 1.46954 * 111.00117 * 183.87218 * 14 13 2 16 16 C 1.53044 * 109.36658 * 183.18573 * 15 14 13 17 17 N 1.46958 * 109.36540 * 301.59744 * 16 15 14 18 18 C 1.46901 * 110.99942 * 183.18603 * 17 16 15 19 19 H 1.08999 * 109.47378 * 299.99663 * 18 17 16 20 20 C 1.52999 * 109.46821 * 60.00313 * 18 17 16 21 21 C 1.50707 * 109.46864 * 179.97438 * 18 17 16 22 22 C 1.38231 * 119.99904 * 140.00152 * 21 18 17 23 23 C 1.38230 * 119.99921 * 179.97438 * 22 21 18 24 24 C 1.38237 * 120.00376 * 359.97438 * 23 22 21 25 25 C 1.38235 * 119.99581 * 0.28233 * 24 23 22 26 26 C 1.38232 * 120.00005 * 319.98256 * 21 18 17 27 27 C 1.46954 * 110.87777 * 59.31902 * 17 16 15 28 28 C 1.46958 * 110.99691 * 307.67194 * 14 13 2 29 29 H 1.09001 * 109.47129 * 300.00204 * 1 2 3 30 30 H 1.09002 * 109.47064 * 59.99761 * 1 2 3 31 31 H 1.08995 * 109.47522 * 180.02562 * 1 2 3 32 32 H 1.09008 * 109.46894 * 184.99963 * 4 2 1 33 33 H 1.09004 * 109.47184 * 304.99393 * 4 2 1 34 34 H 0.97001 * 119.99974 * 180.02562 * 8 7 5 35 35 H 1.08990 * 109.46844 * 177.73844 * 13 2 1 36 36 H 1.09001 * 109.46668 * 57.73556 * 13 2 1 37 37 H 1.09000 * 109.48904 * 63.21868 * 15 14 13 38 38 H 1.09001 * 109.48346 * 303.15652 * 15 14 13 39 39 H 1.09003 * 109.49005 * 181.62885 * 16 15 14 40 40 H 1.09002 * 109.50798 * 61.57695 * 16 15 14 41 41 H 1.09002 * 109.47427 * 59.99995 * 20 18 17 42 42 H 1.09005 * 109.46819 * 179.97438 * 20 18 17 43 43 H 1.08993 * 109.47097 * 299.99291 * 20 18 17 44 44 H 1.08008 * 119.99908 * 359.97438 * 22 21 18 45 45 H 1.08011 * 120.00013 * 179.97438 * 23 22 21 46 46 H 1.07993 * 120.00226 * 180.02562 * 24 23 22 47 47 H 1.07995 * 120.00200 * 179.72457 * 25 24 23 48 48 H 1.07997 * 120.00174 * 359.97438 * 26 21 18 49 49 H 1.08997 * 109.49169 * 60.65186 * 27 17 16 50 50 H 1.09000 * 109.48868 * 180.71011 * 27 17 16 51 51 H 1.09008 * 109.48673 * 296.77999 * 28 14 13 52 52 H 1.08993 * 109.49477 * 56.84446 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 -1.2492 5 6 1.6413 0.0570 -2.4766 6 1 1.0807 0.9746 -2.3757 7 6 1.9932 -0.4018 -3.7282 8 7 1.6448 0.2771 -4.7994 9 14 2.9635 -1.9884 -3.9027 10 1 2.0243 -3.1327 -4.0200 11 1 3.8125 -1.9183 -5.1191 12 1 3.8251 -2.1757 -2.7078 13 6 2.0400 -0.7212 1.2493 14 7 1.5955 0.0021 2.4481 15 6 2.1438 -0.6102 3.6663 16 6 1.5951 0.1216 4.8933 17 7 1.9557 1.5440 4.8142 18 6 1.5112 2.2673 6.0130 19 1 0.4282 2.1861 6.1057 20 6 2.1760 1.6608 7.2503 21 6 1.8983 3.7191 5.8961 22 6 1.0254 4.7035 6.3202 23 6 1.3807 6.0351 6.2135 24 6 2.6091 6.3824 5.6831 25 6 3.4798 5.3982 5.2540 26 6 3.1264 4.0664 5.3651 27 6 1.4074 2.1563 3.5960 28 6 1.9561 1.4246 2.3688 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 3.1263 -0.7995 -1.2056 33 1 1.6054 -1.7199 -1.2951 34 1 1.8921 -0.0458 -5.6800 35 1 3.1292 -0.7564 1.2292 36 1 1.6439 -1.7365 1.2698 37 1 3.2311 -0.5342 3.6537 38 1 1.8527 -1.6598 3.7083 39 1 2.0230 -0.3124 5.7971 40 1 0.5099 0.0225 4.9211 41 1 3.2590 1.7422 7.1576 42 1 1.8464 2.1978 8.1398 43 1 1.8964 0.6108 7.3351 44 1 0.0658 4.4322 6.7350 45 1 0.6985 6.8043 6.5445 46 1 2.8869 7.4227 5.6001 47 1 4.4377 5.6696 4.8355 48 1 3.8087 3.2973 5.0343 49 1 0.3201 2.0805 3.6086 50 1 1.6984 3.2059 3.5539 51 1 3.0413 1.5236 2.3415 52 1 1.5282 1.8585 1.4652 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000895551275.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:38:15 Heat of formation + Delta-G solvation = 28.784950 kcal Electronic energy + Delta-G solvation = -26980.094186 eV Core-core repulsion = 23557.974431 eV Total energy + Delta-G solvation = -3422.119754 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.22501 -38.86144 -36.79370 -34.52163 -32.46234 -31.55994 -31.18399 -30.95837 -29.29909 -27.61535 -26.78301 -24.64774 -23.63584 -23.14275 -22.60521 -21.88295 -20.57111 -19.69571 -18.73767 -17.10390 -16.81699 -16.46016 -15.62321 -15.21480 -14.85473 -14.75988 -14.58904 -14.44799 -14.33604 -13.97330 -13.81735 -13.49472 -13.21400 -13.05028 -12.84952 -12.50356 -12.29124 -12.25101 -11.95069 -11.82731 -11.66311 -11.46604 -11.24356 -11.16302 -11.13902 -10.94529 -10.76539 -10.67982 -10.59691 -10.35384 -9.71681 -9.64567 -9.38404 -9.06952 -9.01549 -8.85750 -8.49664 -8.47394 -8.02758 -6.00144 -3.96840 1.16463 1.25365 3.32874 3.40235 3.43971 3.55865 3.75489 4.12984 4.41168 4.48659 4.72281 4.83454 4.88152 4.94170 5.02499 5.03823 5.12166 5.27034 5.31642 5.33615 5.37521 5.40564 5.44000 5.48816 5.53991 5.64415 5.68637 5.75682 5.81449 5.82970 5.89636 5.92367 5.97648 6.05130 6.11669 6.12569 6.28539 6.33899 6.37339 6.42532 6.44114 6.59392 6.82626 6.85769 6.95045 6.96038 7.05330 7.15990 7.30029 7.34606 7.39092 7.51573 7.85078 8.59486 9.05606 9.62945 11.13351 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.018331 B = 0.002733 C = 0.002523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1527.095315 B =10244.477008 C =11096.318440 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.077 4.077 3 H 0.063 0.937 4 C -0.009 4.009 5 C -0.511 4.511 6 H 0.073 0.927 7 C 0.065 3.935 8 N -0.906 5.906 9 Si 0.878 3.122 10 H -0.278 1.278 11 H -0.289 1.289 12 H -0.266 1.266 13 C 0.059 3.941 14 N -0.535 5.535 15 C 0.057 3.943 16 C 0.057 3.943 17 N -0.532 5.532 18 C 0.121 3.879 19 H 0.047 0.953 20 C -0.141 4.141 21 C -0.078 4.078 22 C -0.117 4.117 23 C -0.123 4.123 24 C -0.123 4.123 25 C -0.124 4.124 26 C -0.092 4.092 27 C 0.058 3.942 28 C 0.054 3.946 29 H 0.042 0.958 30 H 0.058 0.942 31 H 0.040 0.960 32 H 0.012 0.988 33 H 0.011 0.989 34 H 0.262 0.738 35 H 0.027 0.973 36 H 0.069 0.931 37 H 0.038 0.962 38 H 0.075 0.925 39 H 0.079 0.921 40 H 0.041 0.959 41 H 0.065 0.935 42 H 0.059 0.941 43 H 0.060 0.940 44 H 0.118 0.882 45 H 0.119 0.881 46 H 0.118 0.882 47 H 0.120 0.880 48 H 0.130 0.870 49 H 0.040 0.960 50 H 0.079 0.921 51 H 0.038 0.962 52 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.034 6.320 26.921 27.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.096 4.096 3 H 0.082 0.918 4 C -0.047 4.047 5 C -0.549 4.549 6 H 0.091 0.909 7 C -0.136 4.136 8 N -0.545 5.545 9 Si 0.706 3.294 10 H -0.204 1.204 11 H -0.215 1.215 12 H -0.191 1.191 13 C -0.068 4.068 14 N -0.260 5.260 15 C -0.071 4.071 16 C -0.071 4.071 17 N -0.257 5.257 18 C 0.013 3.987 19 H 0.065 0.935 20 C -0.198 4.198 21 C -0.078 4.078 22 C -0.136 4.136 23 C -0.141 4.141 24 C -0.141 4.141 25 C -0.142 4.142 26 C -0.110 4.110 27 C -0.070 4.070 28 C -0.075 4.075 29 H 0.061 0.939 30 H 0.077 0.923 31 H 0.059 0.941 32 H 0.030 0.970 33 H 0.029 0.971 34 H 0.071 0.929 35 H 0.046 0.954 36 H 0.088 0.912 37 H 0.056 0.944 38 H 0.094 0.906 39 H 0.097 0.903 40 H 0.059 0.941 41 H 0.084 0.916 42 H 0.078 0.922 43 H 0.079 0.921 44 H 0.136 0.864 45 H 0.137 0.863 46 H 0.137 0.863 47 H 0.139 0.861 48 H 0.148 0.852 49 H 0.058 0.942 50 H 0.098 0.902 51 H 0.056 0.944 52 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 1.044 6.300 26.728 27.480 hybrid contribution 0.506 -0.815 -0.343 1.019 sum 1.550 5.484 26.385 26.994 Atomic orbital electron populations 1.21596 0.95265 1.00729 1.00531 1.21121 0.96339 0.99203 0.92933 0.91848 1.19608 0.95699 0.95878 0.93471 1.21125 1.35189 1.09545 0.89088 0.90864 1.25027 0.95679 0.96927 0.95962 1.69916 1.47248 1.39346 0.97989 0.86805 0.80651 0.84393 0.77581 1.20381 1.21523 1.19115 1.22312 0.97106 0.97870 0.89499 1.62215 1.59300 1.02355 1.02123 1.22108 0.97410 0.98006 0.89624 1.22196 0.98848 0.87885 0.98123 1.62212 1.59613 1.02316 1.01582 1.20510 0.97238 0.89943 0.91058 0.93470 1.21867 1.01722 1.00458 0.95776 1.19755 0.94749 0.94232 0.99064 1.21007 0.99235 0.92768 1.00580 1.21075 0.96814 0.95999 1.00217 1.21157 0.94429 0.99337 0.99173 1.21220 0.99778 0.93109 1.00090 1.21089 0.96190 0.96104 0.97606 1.22212 0.97491 0.98445 0.88821 1.22236 0.98691 0.88699 0.97825 0.93876 0.92266 0.94125 0.96976 0.97072 0.92853 0.95440 0.91239 0.94372 0.90625 0.90298 0.94089 0.91599 0.92222 0.92102 0.86440 0.86284 0.86346 0.86148 0.85189 0.94214 0.90229 0.94385 0.89091 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.38 8.80 37.16 0.33 -2.05 16 2 C -0.08 -1.53 1.86 -90.62 -0.17 -1.69 16 3 H 0.06 1.29 6.11 -51.93 -0.32 0.97 16 4 C -0.01 -0.21 3.52 -27.89 -0.10 -0.31 16 5 C -0.51 -14.51 8.96 -34.44 -0.31 -14.82 16 6 H 0.07 2.23 7.30 -52.49 -0.38 1.85 16 7 C 0.06 1.89 5.47 -17.82 -0.10 1.80 16 8 N -0.91 -28.13 13.96 55.43 0.77 -27.35 16 9 Si 0.88 21.98 27.47 -169.99 -4.67 17.31 16 10 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 11 H -0.29 -7.19 7.11 56.52 0.40 -6.78 16 12 H -0.27 -6.42 6.54 56.52 0.37 -6.05 16 13 C 0.06 0.99 4.55 -3.82 -0.02 0.97 16 14 N -0.54 -7.76 4.15 -234.47 -0.97 -8.73 16 15 C 0.06 0.69 5.62 -3.77 -0.02 0.67 16 16 C 0.06 0.60 5.32 -3.77 -0.02 0.58 16 17 N -0.53 -5.74 3.92 -227.88 -0.89 -6.63 16 18 C 0.12 1.13 2.28 -68.86 -0.16 0.97 16 19 H 0.05 0.46 8.00 -51.93 -0.42 0.04 16 20 C -0.14 -1.11 8.94 37.16 0.33 -0.78 16 21 C -0.08 -0.76 3.73 -104.62 -0.39 -1.15 16 22 C -0.12 -1.07 9.67 -39.59 -0.38 -1.45 16 23 C -0.12 -1.06 10.05 -39.58 -0.40 -1.46 16 24 C -0.12 -1.07 10.05 -39.58 -0.40 -1.47 16 25 C -0.12 -1.16 10.05 -39.58 -0.40 -1.55 16 26 C -0.09 -0.92 8.12 -39.58 -0.32 -1.25 16 27 C 0.06 0.71 5.20 -3.77 -0.02 0.70 16 28 C 0.05 0.76 5.12 -3.77 -0.02 0.74 16 29 H 0.04 0.75 7.62 -51.93 -0.40 0.35 16 30 H 0.06 1.26 6.95 -51.93 -0.36 0.90 16 31 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.01 0.29 7.20 -51.92 -0.37 -0.08 16 33 H 0.01 0.26 7.57 -51.93 -0.39 -0.13 16 34 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 35 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 37 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.08 0.86 8.14 -51.93 -0.42 0.43 16 39 H 0.08 0.70 6.14 -51.93 -0.32 0.38 16 40 H 0.04 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 42 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 43 H 0.06 0.44 6.34 -51.93 -0.33 0.11 16 44 H 0.12 0.90 8.04 -52.48 -0.42 0.48 16 45 H 0.12 0.79 8.06 -52.48 -0.42 0.37 16 46 H 0.12 0.81 8.06 -52.49 -0.42 0.39 16 47 H 0.12 0.94 8.06 -52.49 -0.42 0.52 16 48 H 0.13 1.36 7.72 -52.49 -0.41 0.96 16 49 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 50 H 0.08 0.98 6.06 -51.93 -0.31 0.67 16 51 H 0.04 0.56 8.14 -51.92 -0.42 0.14 16 52 H 0.09 1.41 5.87 -51.93 -0.30 1.11 16 LS Contribution 392.34 15.07 5.91 5.91 Total: -1.00 -30.34 392.34 -11.80 -42.14 By element: Atomic # 1 Polarization: 8.29 SS G_CDS: -9.40 Total: -1.11 kcal Atomic # 6 Polarization: -18.99 SS G_CDS: -2.55 Total: -21.54 kcal Atomic # 7 Polarization: -41.62 SS G_CDS: -1.09 Total: -42.71 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -4.67 Total: 17.31 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -30.34 -11.80 -42.14 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000895551275.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.928 kcal (2) G-P(sol) polarization free energy of solvation -30.343 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.585 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.800 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.143 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds