Wall clock time and date at job start Tue Mar 31 2020 11:38:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09004 * 109.46983 * 2 1 4 4 C 1.52997 * 109.46850 * 240.00061 * 2 1 3 5 5 C 1.50697 * 109.47338 * 65.00020 * 4 2 1 6 6 H 1.07996 * 119.99983 * 0.02562 * 5 4 2 7 7 C 1.37881 * 119.99656 * 179.97438 * 5 4 2 8 8 N 1.31515 * 119.99597 * 179.97438 * 7 5 4 9 9 Si 1.86793 * 120.00203 * 0.02562 * 7 5 4 10 10 H 1.48504 * 109.47365 * 90.00306 * 9 7 5 11 11 H 1.48503 * 109.47069 * 209.99851 * 9 7 5 12 12 H 1.48500 * 109.47164 * 329.99898 * 9 7 5 13 13 C 1.53003 * 109.47210 * 119.99733 * 2 1 3 14 14 N 1.46901 * 109.47236 * 297.74132 * 13 2 1 15 15 C 1.46954 * 111.00117 * 183.87218 * 14 13 2 16 16 C 1.53044 * 109.36658 * 183.18573 * 15 14 13 17 17 N 1.46958 * 109.36540 * 301.59744 * 16 15 14 18 18 C 1.46901 * 110.99942 * 183.18603 * 17 16 15 19 19 H 1.08999 * 109.47378 * 299.99663 * 18 17 16 20 20 C 1.52999 * 109.46821 * 60.00313 * 18 17 16 21 21 C 1.50707 * 109.46864 * 179.97438 * 18 17 16 22 22 C 1.38231 * 119.99904 * 140.00152 * 21 18 17 23 23 C 1.38230 * 119.99921 * 179.97438 * 22 21 18 24 24 C 1.38237 * 120.00376 * 359.97438 * 23 22 21 25 25 C 1.38235 * 119.99581 * 0.28233 * 24 23 22 26 26 C 1.38232 * 120.00005 * 319.98256 * 21 18 17 27 27 C 1.46954 * 110.87777 * 59.31902 * 17 16 15 28 28 C 1.46958 * 110.99691 * 307.67194 * 14 13 2 29 29 H 1.09001 * 109.47129 * 300.00204 * 1 2 3 30 30 H 1.09002 * 109.47064 * 59.99761 * 1 2 3 31 31 H 1.08995 * 109.47522 * 180.02562 * 1 2 3 32 32 H 1.09008 * 109.46894 * 184.99963 * 4 2 1 33 33 H 1.09004 * 109.47184 * 304.99393 * 4 2 1 34 34 H 0.97001 * 119.99974 * 180.02562 * 8 7 5 35 35 H 1.08990 * 109.46844 * 177.73844 * 13 2 1 36 36 H 1.09001 * 109.46668 * 57.73556 * 13 2 1 37 37 H 1.09000 * 109.48904 * 63.21868 * 15 14 13 38 38 H 1.09001 * 109.48346 * 303.15652 * 15 14 13 39 39 H 1.09003 * 109.49005 * 181.62885 * 16 15 14 40 40 H 1.09002 * 109.50798 * 61.57695 * 16 15 14 41 41 H 1.09002 * 109.47427 * 59.99995 * 20 18 17 42 42 H 1.09005 * 109.46819 * 179.97438 * 20 18 17 43 43 H 1.08993 * 109.47097 * 299.99291 * 20 18 17 44 44 H 1.08008 * 119.99908 * 359.97438 * 22 21 18 45 45 H 1.08011 * 120.00013 * 179.97438 * 23 22 21 46 46 H 1.07993 * 120.00226 * 180.02562 * 24 23 22 47 47 H 1.07995 * 120.00200 * 179.72457 * 25 24 23 48 48 H 1.07997 * 120.00174 * 359.97438 * 26 21 18 49 49 H 1.08997 * 109.49169 * 60.65186 * 27 17 16 50 50 H 1.09000 * 109.48868 * 180.71011 * 27 17 16 51 51 H 1.09008 * 109.48673 * 296.77999 * 28 14 13 52 52 H 1.08993 * 109.49477 * 56.84446 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 -1.2492 5 6 1.6413 0.0570 -2.4766 6 1 1.0807 0.9746 -2.3757 7 6 1.9932 -0.4018 -3.7282 8 7 1.6448 0.2771 -4.7994 9 14 2.9635 -1.9884 -3.9027 10 1 2.0243 -3.1327 -4.0200 11 1 3.8125 -1.9183 -5.1191 12 1 3.8251 -2.1757 -2.7078 13 6 2.0400 -0.7212 1.2493 14 7 1.5955 0.0021 2.4481 15 6 2.1438 -0.6102 3.6663 16 6 1.5951 0.1216 4.8933 17 7 1.9557 1.5440 4.8142 18 6 1.5112 2.2673 6.0130 19 1 0.4282 2.1861 6.1057 20 6 2.1760 1.6608 7.2503 21 6 1.8983 3.7191 5.8961 22 6 1.0254 4.7035 6.3202 23 6 1.3807 6.0351 6.2135 24 6 2.6091 6.3824 5.6831 25 6 3.4798 5.3982 5.2540 26 6 3.1264 4.0664 5.3651 27 6 1.4074 2.1563 3.5960 28 6 1.9561 1.4246 2.3688 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 3.1263 -0.7995 -1.2056 33 1 1.6054 -1.7199 -1.2951 34 1 1.8921 -0.0458 -5.6800 35 1 3.1292 -0.7564 1.2292 36 1 1.6439 -1.7365 1.2698 37 1 3.2311 -0.5342 3.6537 38 1 1.8527 -1.6598 3.7083 39 1 2.0230 -0.3124 5.7971 40 1 0.5099 0.0225 4.9211 41 1 3.2590 1.7422 7.1576 42 1 1.8464 2.1978 8.1398 43 1 1.8964 0.6108 7.3351 44 1 0.0658 4.4322 6.7350 45 1 0.6985 6.8043 6.5445 46 1 2.8869 7.4227 5.6001 47 1 4.4377 5.6696 4.8355 48 1 3.8087 3.2973 5.0343 49 1 0.3201 2.0805 3.6086 50 1 1.6984 3.2059 3.5539 51 1 3.0413 1.5236 2.3415 52 1 1.5282 1.8585 1.4652 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000895551275.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:38:14 Heat of formation + Delta-G solvation = 12.242975 kcal Electronic energy + Delta-G solvation = -26980.811500 eV Core-core repulsion = 23557.974431 eV Total energy + Delta-G solvation = -3422.837068 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.06295 -39.80389 -37.95273 -35.95200 -34.27382 -32.73928 -32.13342 -31.68180 -30.16713 -29.34445 -28.02959 -25.95197 -24.71524 -24.07538 -23.57266 -23.22308 -21.42129 -20.72219 -20.25903 -18.93356 -17.80841 -17.45140 -16.54718 -16.33604 -16.03735 -15.90482 -15.81176 -15.59301 -15.46758 -15.08099 -14.85809 -14.74268 -14.36897 -14.16351 -13.92130 -13.81798 -13.45013 -13.34066 -13.08372 -12.96620 -12.82722 -12.70792 -12.55179 -12.34956 -12.29534 -12.18339 -12.02433 -11.89522 -11.72447 -11.66546 -11.46076 -11.33193 -11.16700 -10.90032 -10.73409 -9.76305 -9.55841 -9.37012 -9.17451 -8.26166 -6.28425 0.47401 0.55828 1.35660 1.37292 1.49095 2.37612 2.79110 2.96666 3.00262 3.09101 3.69407 3.91380 3.97584 4.04695 4.16788 4.20300 4.22136 4.28583 4.32945 4.36228 4.43302 4.46524 4.49275 4.54312 4.57804 4.68423 4.74630 4.81608 4.82820 4.84897 4.87997 4.91942 4.95653 5.01125 5.04605 5.09067 5.13089 5.17364 5.23037 5.33890 5.38892 5.40652 5.52793 5.60419 5.67709 5.68976 5.69319 5.72193 6.02706 6.05049 6.15867 6.23997 6.25018 6.35493 6.78993 7.35043 8.90700 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.018331 B = 0.002733 C = 0.002523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1527.095315 B =10244.477008 C =11096.318440 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.072 4.072 3 H 0.050 0.950 4 C -0.005 4.005 5 C -0.517 4.517 6 H 0.034 0.966 7 C 0.001 3.999 8 N -0.954 5.954 9 Si 0.948 3.052 10 H -0.267 1.267 11 H -0.286 1.286 12 H -0.248 1.248 13 C 0.071 3.929 14 N -0.538 5.538 15 C 0.057 3.943 16 C 0.061 3.939 17 N -0.534 5.534 18 C 0.123 3.877 19 H 0.048 0.952 20 C -0.135 4.135 21 C -0.087 4.087 22 C -0.126 4.126 23 C -0.128 4.128 24 C -0.130 4.130 25 C -0.135 4.135 26 C -0.105 4.105 27 C 0.071 3.929 28 C 0.057 3.943 29 H 0.060 0.940 30 H 0.026 0.974 31 H 0.046 0.954 32 H 0.013 0.987 33 H 0.018 0.982 34 H 0.264 0.736 35 H 0.026 0.974 36 H 0.079 0.921 37 H 0.034 0.966 38 H 0.089 0.911 39 H 0.102 0.898 40 H 0.038 0.962 41 H 0.058 0.942 42 H 0.068 0.932 43 H 0.070 0.930 44 H 0.131 0.869 45 H 0.139 0.861 46 H 0.136 0.864 47 H 0.130 0.870 48 H 0.121 0.879 49 H 0.032 0.968 50 H 0.077 0.923 51 H 0.029 0.971 52 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.473 4.996 29.462 29.919 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.091 4.091 3 H 0.069 0.931 4 C -0.043 4.043 5 C -0.556 4.556 6 H 0.052 0.948 7 C -0.195 4.195 8 N -0.596 5.596 9 Si 0.772 3.228 10 H -0.192 1.192 11 H -0.212 1.212 12 H -0.171 1.171 13 C -0.056 4.056 14 N -0.263 5.263 15 C -0.071 4.071 16 C -0.066 4.066 17 N -0.260 5.260 18 C 0.015 3.985 19 H 0.066 0.934 20 C -0.192 4.192 21 C -0.087 4.087 22 C -0.144 4.144 23 C -0.146 4.146 24 C -0.148 4.148 25 C -0.153 4.153 26 C -0.123 4.123 27 C -0.057 4.057 28 C -0.071 4.071 29 H 0.079 0.921 30 H 0.045 0.955 31 H 0.065 0.935 32 H 0.032 0.968 33 H 0.036 0.964 34 H 0.073 0.927 35 H 0.044 0.956 36 H 0.098 0.902 37 H 0.053 0.947 38 H 0.108 0.892 39 H 0.120 0.880 40 H 0.056 0.944 41 H 0.077 0.923 42 H 0.087 0.913 43 H 0.089 0.911 44 H 0.149 0.851 45 H 0.157 0.843 46 H 0.154 0.846 47 H 0.148 0.852 48 H 0.139 0.861 49 H 0.050 0.950 50 H 0.095 0.905 51 H 0.048 0.952 52 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 1.481 4.977 29.304 29.761 hybrid contribution 0.323 -0.273 -1.115 1.192 sum 1.804 4.704 28.190 28.636 Atomic orbital electron populations 1.21464 0.94922 1.00819 0.99773 1.20985 0.96532 0.98510 0.93084 0.93124 1.19552 0.95740 0.95796 0.93225 1.21432 1.34255 1.08640 0.91227 0.94815 1.25999 0.97013 1.00969 0.95511 1.70075 1.49111 1.41663 0.98705 0.85689 0.79357 0.79574 0.78208 1.19208 1.21211 1.17115 1.22075 0.96860 0.97901 0.88813 1.62210 1.59484 1.02257 1.02299 1.22210 0.97197 0.98848 0.88882 1.22212 0.98720 0.87477 0.98208 1.62210 1.59580 1.02677 1.01500 1.20550 0.97352 0.89757 0.90857 0.93401 1.21829 1.01111 1.01055 0.95252 1.19857 0.94803 0.94668 0.99364 1.21236 0.99704 0.92944 1.00558 1.21382 0.97096 0.96417 0.99678 1.21437 0.94426 1.00174 0.98782 1.21428 1.00506 0.93116 1.00280 1.21088 0.96464 0.96297 0.98436 1.21999 0.96745 0.98109 0.88887 1.22146 0.98029 0.88894 0.98035 0.92101 0.95459 0.93488 0.96819 0.96361 0.92684 0.95569 0.90246 0.94729 0.89230 0.88026 0.94367 0.92256 0.91295 0.91097 0.85113 0.84317 0.84577 0.85241 0.86119 0.95007 0.90520 0.95241 0.91071 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.33 8.80 71.98 0.63 -3.70 16 2 C -0.07 -2.85 1.86 -10.79 -0.02 -2.87 16 3 H 0.05 2.12 6.11 -2.38 -0.01 2.10 16 4 C -0.01 -0.25 3.52 29.85 0.10 -0.14 16 5 C -0.52 -30.14 8.96 25.60 0.23 -29.91 16 6 H 0.03 2.17 7.30 -2.91 -0.02 2.15 16 7 C 0.00 0.07 5.47 84.66 0.46 0.53 16 8 N -0.95 -60.92 13.96 21.45 0.30 -60.62 16 9 Si 0.95 45.04 27.47 68.60 1.88 46.93 16 10 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 11 H -0.29 -13.39 7.11 99.48 0.71 -12.68 16 12 H -0.25 -10.92 6.54 99.48 0.65 -10.27 16 13 C 0.07 2.25 4.55 86.30 0.39 2.65 16 14 N -0.54 -14.82 4.15 -895.73 -3.72 -18.53 16 15 C 0.06 1.24 5.62 86.31 0.48 1.73 16 16 C 0.06 1.14 5.32 86.31 0.46 1.60 16 17 N -0.53 -10.76 3.92 -874.87 -3.43 -14.18 16 18 C 0.12 2.10 2.28 44.17 0.10 2.20 16 19 H 0.05 0.83 8.00 -2.39 -0.02 0.81 16 20 C -0.14 -1.83 8.94 71.98 0.64 -1.18 16 21 C -0.09 -1.60 3.73 -19.87 -0.07 -1.67 16 22 C -0.13 -2.11 9.67 22.27 0.22 -1.89 16 23 C -0.13 -2.00 10.05 22.27 0.22 -1.77 16 24 C -0.13 -2.11 10.05 22.27 0.22 -1.89 16 25 C -0.14 -2.45 10.05 22.27 0.22 -2.22 16 26 C -0.10 -2.06 8.12 22.27 0.18 -1.88 16 27 C 0.07 1.70 5.20 86.31 0.45 2.15 16 28 C 0.06 1.61 5.12 86.31 0.44 2.06 16 29 H 0.06 2.10 7.62 -2.39 -0.02 2.08 16 30 H 0.03 1.19 6.95 -2.39 -0.02 1.17 16 31 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 32 H 0.01 0.64 7.20 -2.38 -0.02 0.62 16 33 H 0.02 0.84 7.57 -2.38 -0.02 0.82 16 34 H 0.26 15.76 8.31 -92.71 -0.77 14.99 16 35 H 0.03 0.84 8.14 -2.39 -0.02 0.82 16 36 H 0.08 2.39 8.14 -2.39 -0.02 2.37 16 37 H 0.03 0.80 8.14 -2.39 -0.02 0.78 16 38 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 39 H 0.10 1.46 6.14 -2.39 -0.01 1.44 16 40 H 0.04 0.75 8.14 -2.39 -0.02 0.73 16 41 H 0.06 0.89 8.14 -2.39 -0.02 0.88 16 42 H 0.07 0.82 8.14 -2.38 -0.02 0.80 16 43 H 0.07 0.81 6.34 -2.39 -0.02 0.80 16 44 H 0.13 1.76 8.04 -2.91 -0.02 1.74 16 45 H 0.14 1.54 8.06 -2.91 -0.02 1.52 16 46 H 0.14 1.63 8.06 -2.91 -0.02 1.61 16 47 H 0.13 1.98 8.06 -2.91 -0.02 1.96 16 48 H 0.12 2.54 7.72 -2.91 -0.02 2.52 16 49 H 0.03 0.81 8.14 -2.39 -0.02 0.79 16 50 H 0.08 1.89 6.06 -2.39 -0.01 1.87 16 51 H 0.03 0.87 8.14 -2.38 -0.02 0.86 16 52 H 0.07 2.27 5.87 -2.39 -0.01 2.26 16 Total: -1.00 -66.37 392.34 1.22 -65.16 By element: Atomic # 1 Polarization: 16.68 SS G_CDS: 0.80 Total: 17.48 kcal Atomic # 6 Polarization: -41.61 SS G_CDS: 5.38 Total: -36.23 kcal Atomic # 7 Polarization: -86.49 SS G_CDS: -6.84 Total: -93.33 kcal Atomic # 14 Polarization: 45.04 SS G_CDS: 1.88 Total: 46.93 kcal Total: -66.37 1.22 -65.16 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000895551275.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.402 kcal (2) G-P(sol) polarization free energy of solvation -66.374 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.028 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.215 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.159 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds