Wall clock time and date at job start Tue Mar 31 2020 11:29:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09002 * 110.00982 * 2 1 4 4 C 1.54317 * 109.88892 * 121.11268 * 2 1 3 5 5 H 1.09005 * 110.70524 * 23.31121 * 4 2 1 6 6 N 1.46893 * 110.71034 * 260.07352 * 4 2 1 7 7 C 1.46900 * 111.00506 * 155.00069 * 6 4 2 8 8 C 1.52995 * 109.47473 * 180.02562 * 7 6 4 9 9 C 1.53000 * 109.47205 * 300.00150 * 8 7 6 10 10 C 1.53008 * 109.46990 * 60.00008 * 8 7 6 11 11 C 1.50702 * 109.47442 * 179.97438 * 8 7 6 12 12 H 1.07995 * 119.99439 * 357.60746 * 11 8 7 13 13 C 1.37872 * 120.00323 * 177.61315 * 11 8 7 14 14 N 1.31515 * 119.99917 * 6.34281 * 13 11 8 15 15 Si 1.86794 * 120.00180 * 186.35177 * 13 11 8 16 16 H 1.48499 * 109.47592 * 84.96580 * 15 13 11 17 17 H 1.48503 * 109.47320 * 204.97283 * 15 13 11 18 18 H 1.48506 * 109.46813 * 324.96615 * 15 13 11 19 19 C 1.55144 * 103.01778 * 141.68907 * 4 2 1 20 20 C 1.54909 * 101.65181 * 324.34709 * 19 4 2 21 21 N 1.47440 * 109.88726 * 238.88493 * 2 1 3 22 22 C 1.46897 * 111.00039 * 3.85153 * 21 2 1 23 23 C 1.50705 * 109.46909 * 169.99979 * 22 21 2 24 24 C 1.38227 * 119.99982 * 269.72398 * 23 22 21 25 25 C 1.38242 * 119.99983 * 179.76652 * 24 23 22 26 26 C 1.38232 * 119.99742 * 0.49009 * 25 24 23 27 27 C 1.38237 * 120.00037 * 359.78489 * 26 25 24 28 28 C 1.38234 * 120.00010 * 359.96146 * 27 26 25 29 29 H 1.09002 * 109.47029 * 179.66165 * 1 2 3 30 30 H 1.09001 * 109.47078 * 299.66055 * 1 2 3 31 31 H 1.08992 * 109.46959 * 59.66429 * 1 2 3 32 32 H 1.00906 * 110.99956 * 278.95873 * 6 4 2 33 33 H 1.09001 * 109.47193 * 299.99999 * 7 6 4 34 34 H 1.08996 * 109.47123 * 59.99838 * 7 6 4 35 35 H 1.08998 * 109.47193 * 65.10687 * 9 8 7 36 36 H 1.09002 * 109.47350 * 185.10980 * 9 8 7 37 37 H 1.08997 * 109.46811 * 305.10472 * 9 8 7 38 38 H 1.09001 * 109.47175 * 60.00327 * 10 8 7 39 39 H 1.09003 * 109.46868 * 179.97438 * 10 8 7 40 40 H 1.08999 * 109.46901 * 299.99765 * 10 8 7 41 41 H 0.97000 * 120.00065 * 180.02562 * 14 13 11 42 42 H 1.09000 * 110.98713 * 82.44202 * 19 4 2 43 43 H 1.08998 * 110.99233 * 206.21776 * 19 4 2 44 44 H 1.08992 * 110.37568 * 278.23606 * 20 19 4 45 45 H 1.09001 * 110.36789 * 155.89684 * 20 19 4 46 46 H 1.09001 * 109.46863 * 289.99859 * 22 21 2 47 47 H 1.08994 * 109.47079 * 49.99881 * 22 21 2 48 48 H 1.07998 * 120.00386 * 0.02562 * 24 23 22 49 49 H 1.08002 * 119.99833 * 180.25231 * 25 24 23 50 50 H 1.08001 * 120.00100 * 179.77274 * 26 25 24 51 51 H 1.08007 * 119.99773 * 179.97438 * 27 26 25 52 52 H 1.08001 * 119.99667 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9030 1.0242 0.0000 4 6 2.0550 -0.7498 1.2424 5 1 1.3056 -1.4472 1.6169 6 7 2.4545 0.1981 2.2910 7 6 2.3851 -0.4258 3.6191 8 6 2.8067 0.5901 4.6825 9 6 4.2403 1.0495 4.4091 10 6 1.8670 1.7967 4.6362 11 6 2.7350 -0.0497 6.0451 12 1 2.3833 -1.0658 6.1465 13 6 3.1181 0.6619 7.1620 14 7 3.4270 1.9359 7.0560 15 14 3.1988 -0.1833 8.8258 16 1 4.5146 -0.8550 8.9767 17 1 3.0318 0.8259 9.9024 18 1 2.1139 -1.1928 8.9212 19 6 3.2893 -1.5134 0.6941 20 6 2.8189 -1.8833 -0.7348 21 7 2.0316 -0.7165 -1.1870 22 6 0.9240 -1.1340 -2.0569 23 6 1.4757 -1.6387 -3.3654 24 6 1.6619 -0.7648 -4.4200 25 6 2.1726 -1.2269 -5.6187 26 6 2.4874 -2.5649 -5.7658 27 6 2.2958 -3.4399 -4.7129 28 6 1.7901 -2.9768 -3.5126 29 1 -0.3633 -1.0277 -0.0061 30 1 -0.3633 0.5086 0.8930 31 1 -0.3633 0.5190 -0.8869 32 1 3.3765 0.5673 2.1126 33 1 1.3637 -0.7526 3.8141 34 1 3.0542 -1.2856 3.6520 35 1 4.2740 1.5924 3.4646 36 1 4.5727 1.7028 5.2159 37 1 4.8956 0.1803 4.3522 38 1 0.8457 1.4695 4.8310 39 1 2.1671 2.5203 5.3941 40 1 1.9186 2.2597 3.6507 41 1 3.6970 2.4365 7.8417 42 1 4.1658 -0.8664 0.6614 43 1 3.4887 -2.4080 1.2840 44 1 2.1940 -2.7759 -0.7094 45 1 3.6772 -2.0383 -1.3885 46 1 0.3593 -1.9289 -1.5698 47 1 0.2679 -0.2837 -2.2431 48 1 1.4124 0.2798 -4.3063 49 1 2.3219 -0.5433 -6.4414 50 1 2.8829 -2.9266 -6.7034 51 1 2.5415 -4.4853 -4.8281 52 1 1.6409 -3.6604 -2.6899 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000926566732.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:29:04 Heat of formation + Delta-G solvation = 16.917453 kcal Electronic energy + Delta-G solvation = -26854.899251 eV Core-core repulsion = 23432.264884 eV Total energy + Delta-G solvation = -3422.634368 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.05268 -39.69568 -38.28208 -35.58180 -33.62506 -32.48457 -32.24342 -31.68210 -29.72590 -27.49530 -27.24997 -26.54238 -26.30572 -24.58757 -23.43216 -22.54209 -21.82574 -20.57158 -20.14984 -17.94757 -17.64538 -17.19225 -16.90376 -16.57635 -16.20286 -15.93982 -15.78240 -15.28658 -14.89630 -14.66422 -14.53619 -14.30493 -14.10619 -13.95788 -13.62937 -13.49367 -13.32319 -13.16509 -13.02038 -12.97911 -12.87169 -12.57081 -12.46420 -12.31489 -12.22707 -12.20307 -12.02692 -11.89113 -11.76483 -11.68156 -11.55797 -11.29611 -10.89604 -10.61226 -10.32070 -9.75270 -9.64556 -9.23542 -9.04097 -7.96529 -6.12762 0.48655 0.57048 1.42038 1.44018 1.51569 2.46323 2.79083 3.19545 3.24972 3.34731 3.76394 3.79491 3.91179 4.00536 4.12735 4.21209 4.26185 4.33482 4.36270 4.43036 4.52734 4.54519 4.64332 4.64820 4.65863 4.74330 4.77589 4.82814 4.88621 4.94187 5.01534 5.06188 5.11453 5.16261 5.18996 5.22486 5.27750 5.30007 5.33308 5.45481 5.56488 5.61991 5.68202 5.70898 5.76256 5.77565 6.04051 6.12291 6.19504 6.22001 6.28772 6.36359 6.51031 6.65253 6.96756 7.54325 9.01325 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.033194 B = 0.002336 C = 0.002290 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 843.311990 B =11984.420928 C =12225.452835 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.084 3.916 3 H 0.081 0.919 4 C 0.074 3.926 5 H 0.073 0.927 6 N -0.674 5.674 7 C 0.095 3.905 8 C 0.059 3.941 9 C -0.121 4.121 10 C -0.105 4.105 11 C -0.525 4.525 12 H 0.044 0.956 13 C 0.022 3.978 14 N -0.902 5.902 15 Si 0.943 3.057 16 H -0.278 1.278 17 H -0.286 1.286 18 H -0.274 1.274 19 C -0.157 4.157 20 C 0.057 3.943 21 N -0.523 5.523 22 C 0.086 3.914 23 C -0.086 4.086 24 C -0.114 4.114 25 C -0.129 4.129 26 C -0.130 4.130 27 C -0.130 4.130 28 C -0.125 4.125 29 H 0.057 0.943 30 H 0.055 0.945 31 H 0.074 0.926 32 H 0.340 0.660 33 H 0.045 0.955 34 H 0.008 0.992 35 H 0.033 0.967 36 H 0.053 0.947 37 H 0.018 0.982 38 H 0.008 0.992 39 H 0.049 0.951 40 H 0.034 0.966 41 H 0.257 0.743 42 H 0.070 0.930 43 H 0.070 0.930 44 H 0.052 0.948 45 H 0.076 0.924 46 H 0.048 0.952 47 H 0.094 0.906 48 H 0.126 0.874 49 H 0.137 0.863 50 H 0.139 0.861 51 H 0.136 0.864 52 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.469 -8.295 -24.519 26.116 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.024 4.024 3 H 0.099 0.901 4 C -0.038 4.038 5 H 0.091 0.909 6 N -0.305 5.305 7 C -0.034 4.034 8 C 0.059 3.941 9 C -0.179 4.179 10 C -0.163 4.163 11 C -0.564 4.564 12 H 0.062 0.938 13 C -0.177 4.177 14 N -0.541 5.541 15 Si 0.770 3.230 16 H -0.204 1.204 17 H -0.212 1.212 18 H -0.199 1.199 19 C -0.197 4.197 20 C -0.071 4.071 21 N -0.247 5.247 22 C -0.041 4.041 23 C -0.087 4.087 24 C -0.132 4.132 25 C -0.147 4.147 26 C -0.148 4.148 27 C -0.147 4.147 28 C -0.144 4.144 29 H 0.076 0.924 30 H 0.074 0.926 31 H 0.093 0.907 32 H 0.160 0.840 33 H 0.064 0.936 34 H 0.027 0.973 35 H 0.052 0.948 36 H 0.072 0.928 37 H 0.037 0.963 38 H 0.028 0.972 39 H 0.068 0.932 40 H 0.052 0.948 41 H 0.067 0.933 42 H 0.089 0.911 43 H 0.089 0.911 44 H 0.070 0.930 45 H 0.094 0.906 46 H 0.066 0.934 47 H 0.112 0.888 48 H 0.144 0.856 49 H 0.155 0.845 50 H 0.157 0.843 51 H 0.154 0.846 52 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -3.741 -7.505 -24.625 26.014 hybrid contribution 0.433 -1.431 1.816 2.352 sum -3.308 -8.937 -22.809 24.720 Atomic orbital electron populations 1.22263 0.94858 1.01954 1.02602 1.22279 0.94486 0.98388 0.87281 0.90109 1.22876 0.96272 0.92679 0.91935 0.90898 1.60456 1.33451 1.35448 1.01123 1.21786 0.98227 0.95145 0.88215 1.18148 0.92260 0.92288 0.91428 1.21644 0.98118 0.98987 0.99174 1.21493 0.96609 0.99480 0.98706 1.21406 1.43344 0.98823 0.92813 0.93814 1.25529 0.95372 0.95257 1.01566 1.69977 1.46573 1.07721 1.29792 0.85816 0.78305 0.78375 0.80536 1.20423 1.21196 1.19901 1.23374 0.98680 1.00974 0.96644 1.22886 0.97721 0.92081 0.94443 1.63789 1.21857 1.22982 1.16087 1.21357 0.92406 1.00008 0.90301 1.19906 0.99655 0.93791 0.95311 1.21211 0.99161 0.99770 0.93102 1.21428 0.99033 0.96385 0.97871 1.21445 1.00059 0.93694 0.99640 1.21389 0.99438 1.00667 0.93251 1.21226 0.99753 0.95249 0.98131 0.92360 0.92611 0.90750 0.83972 0.93646 0.97344 0.94766 0.92805 0.96291 0.97250 0.93200 0.94752 0.93334 0.91134 0.91083 0.93000 0.90587 0.93438 0.88800 0.85622 0.84501 0.84347 0.84613 0.86029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.43 7.84 71.98 0.56 -2.86 16 2 C 0.08 2.06 3.77 45.26 0.17 2.23 16 3 H 0.08 2.24 8.03 -2.39 -0.02 2.22 16 4 C 0.07 2.05 2.80 46.10 0.13 2.18 16 5 H 0.07 2.10 7.54 -2.38 -0.02 2.09 16 6 N -0.67 -22.78 5.52 -485.51 -2.68 -25.46 16 7 C 0.10 3.87 4.45 86.30 0.38 4.25 16 8 C 0.06 2.84 0.57 -52.93 -0.03 2.81 16 9 C -0.12 -5.67 7.82 71.98 0.56 -5.11 16 10 C -0.11 -5.12 8.12 71.98 0.58 -4.54 16 11 C -0.53 -28.29 8.01 25.60 0.20 -28.08 16 12 H 0.04 2.36 7.75 -2.91 -0.02 2.34 16 13 C 0.02 1.19 5.10 84.65 0.43 1.62 16 14 N -0.90 -50.41 9.38 21.45 0.20 -50.21 16 15 Si 0.94 43.37 29.54 68.60 2.03 45.39 16 16 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 17 H -0.29 -13.00 7.11 99.48 0.71 -12.30 16 18 H -0.27 -12.39 7.11 99.48 0.71 -11.69 16 19 C -0.16 -3.90 6.66 31.98 0.21 -3.68 16 20 C 0.06 1.22 5.61 86.77 0.49 1.71 16 21 N -0.52 -11.57 5.15 -865.07 -4.46 -16.02 16 22 C 0.09 1.62 3.85 85.56 0.33 1.95 16 23 C -0.09 -1.62 5.09 -19.87 -0.10 -1.72 16 24 C -0.11 -2.03 9.70 22.27 0.22 -1.82 16 25 C -0.13 -2.01 10.05 22.27 0.22 -1.78 16 26 C -0.13 -1.90 10.05 22.27 0.22 -1.68 16 27 C -0.13 -1.99 10.05 22.27 0.22 -1.77 16 28 C -0.13 -2.18 8.93 22.27 0.20 -1.98 16 29 H 0.06 1.17 6.91 -2.39 -0.02 1.15 16 30 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 31 H 0.07 1.37 6.42 -2.39 -0.02 1.35 16 32 H 0.34 11.56 6.37 -89.69 -0.57 10.99 16 33 H 0.04 1.91 8.08 -2.39 -0.02 1.89 16 34 H 0.01 0.34 8.14 -2.39 -0.02 0.32 16 35 H 0.03 1.41 6.84 -2.39 -0.02 1.40 16 36 H 0.05 2.83 6.01 -2.39 -0.01 2.81 16 37 H 0.02 0.83 8.14 -2.39 -0.02 0.81 16 38 H 0.01 0.42 8.14 -2.39 -0.02 0.40 16 39 H 0.05 2.69 6.03 -2.39 -0.01 2.68 16 40 H 0.03 1.52 7.60 -2.39 -0.02 1.50 16 41 H 0.26 13.86 8.31 -92.71 -0.77 13.09 16 42 H 0.07 1.84 7.77 -2.39 -0.02 1.82 16 43 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 44 H 0.05 1.03 6.99 -2.39 -0.02 1.01 16 45 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 46 H 0.05 0.87 6.75 -2.39 -0.02 0.85 16 47 H 0.09 1.65 6.02 -2.39 -0.01 1.63 16 48 H 0.13 2.04 8.06 -2.91 -0.02 2.01 16 49 H 0.14 1.55 8.06 -2.91 -0.02 1.52 16 50 H 0.14 1.37 8.06 -2.91 -0.02 1.35 16 51 H 0.14 1.53 8.06 -2.91 -0.02 1.50 16 52 H 0.12 1.90 7.48 -2.91 -0.02 1.88 16 Total: -1.00 -57.50 391.36 0.41 -57.09 By element: Atomic # 1 Polarization: 27.18 SS G_CDS: 0.31 Total: 27.49 kcal Atomic # 6 Polarization: -43.30 SS G_CDS: 5.02 Total: -38.28 kcal Atomic # 7 Polarization: -84.76 SS G_CDS: -6.94 Total: -91.69 kcal Atomic # 14 Polarization: 43.37 SS G_CDS: 2.03 Total: 45.39 kcal Total: -57.50 0.41 -57.09 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000926566732.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.008 kcal (2) G-P(sol) polarization free energy of solvation -57.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.091 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds