Wall clock time and date at job start Tue Mar 31 2020 11:38:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08999 * 109.46863 * 2 1 4 4 C 1.52999 * 109.46921 * 119.99679 * 2 1 3 5 5 C 1.50702 * 109.47522 * 295.00468 * 4 2 1 6 6 H 1.08002 * 119.99446 * 359.97438 * 5 4 2 7 7 C 1.37871 * 120.00072 * 180.02562 * 5 4 2 8 8 N 1.31516 * 119.99826 * 179.72119 * 7 5 4 9 9 Si 1.86800 * 120.00406 * 359.97438 * 7 5 4 10 10 H 1.48501 * 109.46758 * 269.72576 * 9 7 5 11 11 H 1.48499 * 109.47026 * 29.72423 * 9 7 5 12 12 H 1.48496 * 109.47474 * 149.72459 * 9 7 5 13 13 C 1.52999 * 109.47239 * 239.99874 * 2 1 3 14 14 N 1.46497 * 109.47479 * 65.00221 * 13 2 1 15 15 C 1.39670 * 120.00372 * 179.97438 * 14 13 2 16 16 C 1.38906 * 120.07287 * 359.72128 * 15 14 13 17 17 C 1.38104 * 119.92519 * 179.77322 * 16 15 14 18 18 C 1.38288 * 120.07319 * 0.50401 * 17 16 15 19 19 C 1.50703 * 119.92697 * 179.72781 * 18 17 16 20 20 N 1.46901 * 109.46856 * 270.02342 * 19 18 17 21 21 C 1.46842 * 110.99931 * 294.20752 * 20 19 18 22 22 C 1.53033 * 109.52351 * 174.16297 * 21 20 19 23 23 C 1.53117 * 109.28018 * 59.18204 * 22 21 20 24 24 C 1.53118 * 109.15728 * 302.34225 * 23 22 21 25 25 C 1.46848 * 110.99825 * 169.99779 * 20 19 18 26 26 C 1.38285 * 120.14907 * 359.74776 * 18 17 16 27 27 C 1.38105 * 120.07239 * 359.97438 * 26 18 17 28 28 H 1.09001 * 109.47667 * 300.00120 * 1 2 3 29 29 H 1.09008 * 109.47037 * 60.00507 * 1 2 3 30 30 H 1.09007 * 109.47198 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47527 * 175.00066 * 4 2 1 32 32 H 1.09001 * 109.47054 * 55.00157 * 4 2 1 33 33 H 0.96999 * 120.00128 * 180.27192 * 8 7 5 34 34 H 1.09004 * 109.46992 * 185.00306 * 13 2 1 35 35 H 1.08999 * 109.47129 * 304.99562 * 13 2 1 36 36 H 0.97005 * 119.99255 * 359.97438 * 14 13 2 37 37 H 1.08001 * 120.03749 * 359.97438 * 16 15 14 38 38 H 1.07997 * 119.96873 * 180.25475 * 17 16 15 39 39 H 1.09001 * 109.46869 * 30.01762 * 19 18 17 40 40 H 1.08999 * 109.47461 * 150.01788 * 19 18 17 41 41 H 1.09002 * 109.46358 * 294.17876 * 21 20 19 42 42 H 1.09000 * 109.46462 * 54.14404 * 21 20 19 43 43 H 1.08998 * 109.50754 * 299.23434 * 22 21 20 44 44 H 1.09008 * 109.50608 * 179.11919 * 22 21 20 45 45 H 1.09005 * 109.52579 * 182.44286 * 23 22 21 46 46 H 1.08998 * 109.52387 * 62.24683 * 23 22 21 47 47 H 1.08994 * 109.50859 * 297.71816 * 24 23 22 48 48 H 1.08997 * 109.50497 * 177.59330 * 24 23 22 49 49 H 1.09000 * 109.46454 * 305.85655 * 25 20 19 50 50 H 1.08999 * 109.46334 * 65.82439 * 25 20 19 51 51 H 1.08000 * 119.96518 * 179.97438 * 26 18 17 52 52 H 1.08003 * 120.03455 * 179.97438 * 27 26 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 1.6412 0.0571 2.4767 6 1 1.0804 0.9746 2.3756 7 6 1.9930 -0.4017 3.7283 8 7 1.6498 0.2804 4.7991 9 14 2.9635 -1.9882 3.9029 10 1 2.0242 -3.1318 4.0269 11 1 3.8201 -2.1789 2.7051 12 1 3.8174 -1.9153 5.1156 13 6 2.0400 -0.7213 -1.2492 14 7 1.6525 0.0353 -2.4424 15 6 2.0091 -0.4295 -3.7103 16 6 2.7360 -1.6058 -3.8415 17 6 3.0829 -2.0650 -5.0969 18 6 2.7163 -1.3496 -6.2222 19 6 3.1019 -1.8505 -7.5902 20 7 4.4101 -1.2964 -7.9638 21 6 4.3369 0.1610 -8.1274 22 6 5.7407 0.7193 -8.3720 23 6 6.3290 0.0747 -9.6301 24 6 6.3493 -1.4461 -9.4530 25 6 4.9278 -1.9417 -9.1770 26 6 1.9970 -0.1754 -6.0949 27 6 1.6420 0.2864 -4.8427 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3634 -1.0277 0.0005 31 1 3.1262 -0.7995 1.2057 32 1 1.6053 -1.7197 1.2952 33 1 1.9007 -0.0402 5.6795 34 1 3.1263 -0.7995 -1.2055 35 1 1.6054 -1.7198 -1.2951 36 1 1.1483 0.8590 -2.3517 37 1 3.0269 -2.1624 -2.9629 38 1 3.6446 -2.9817 -5.1999 39 1 3.1590 -2.9389 -7.5758 40 1 2.3529 -1.5356 -8.3169 41 1 3.6980 0.3994 -8.9777 42 1 3.9208 0.6075 -7.2243 43 1 6.3765 0.4934 -7.5160 44 1 5.6841 1.7993 -8.5090 45 1 7.3455 0.4370 -9.7838 46 1 5.7149 0.3328 -10.4928 47 1 6.9945 -1.7062 -8.6139 48 1 6.7274 -1.9134 -10.3622 49 1 4.9409 -3.0225 -9.0363 50 1 4.2862 -1.6934 -10.0225 51 1 1.7126 0.3811 -6.9757 52 1 1.0806 1.2037 -4.7440 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001119450186.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:38:48 Heat of formation + Delta-G solvation = 2.210851 kcal Electronic energy + Delta-G solvation = -25778.094760 eV Core-core repulsion = 22354.822666 eV Total energy + Delta-G solvation = -3423.272094 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.87917 -38.80186 -36.83601 -34.67303 -33.33719 -32.06600 -31.18948 -30.76551 -29.61318 -27.59159 -26.46134 -25.16529 -23.44646 -23.03305 -22.90300 -21.79928 -20.57186 -19.93951 -19.31697 -17.15644 -16.83341 -16.39366 -15.88390 -15.46455 -15.07811 -14.73967 -14.68160 -14.33296 -14.21868 -13.85720 -13.68266 -13.59721 -13.39569 -13.25855 -13.10580 -12.87279 -12.47856 -12.32704 -12.06389 -11.99528 -11.77054 -11.51103 -11.34662 -11.11251 -11.00721 -10.92670 -10.80783 -10.68534 -10.55580 -10.53213 -10.05076 -9.80028 -9.70821 -9.59867 -9.14770 -8.80566 -8.56390 -8.50909 -7.16715 -6.06672 -4.04682 1.55646 1.67031 3.29026 3.37012 3.39933 3.63165 3.69759 4.12602 4.42921 4.52149 4.55807 4.63540 4.80843 4.88190 4.99325 5.10784 5.15889 5.17276 5.24189 5.26428 5.32210 5.38293 5.41549 5.47012 5.51643 5.56970 5.58808 5.64282 5.68832 5.76728 5.79089 5.84179 5.89348 5.92241 6.08618 6.09296 6.12972 6.27241 6.31183 6.44042 6.50426 6.66688 6.74997 6.81054 6.88157 6.93129 6.97531 7.01637 7.18721 7.35137 7.54692 7.76073 7.94506 8.50483 8.97506 9.55532 11.06475 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.022607 B = 0.002078 C = 0.002018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1238.284518 B =13473.739191 C =13872.051358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.087 4.087 3 H 0.068 0.932 4 C -0.006 4.006 5 C -0.516 4.516 6 H 0.073 0.927 7 C 0.065 3.935 8 N -0.903 5.903 9 Si 0.878 3.122 10 H -0.277 1.277 11 H -0.265 1.265 12 H -0.288 1.288 13 C 0.124 3.876 14 N -0.740 5.740 15 C 0.227 3.773 16 C -0.201 4.201 17 C -0.047 4.047 18 C -0.152 4.152 19 C 0.106 3.894 20 N -0.533 5.533 21 C 0.053 3.947 22 C -0.118 4.118 23 C -0.121 4.121 24 C -0.117 4.117 25 C 0.055 3.945 26 C -0.065 4.065 27 C -0.204 4.204 28 H 0.068 0.932 29 H 0.032 0.968 30 H 0.046 0.954 31 H 0.017 0.983 32 H 0.014 0.986 33 H 0.263 0.737 34 H 0.056 0.944 35 H 0.055 0.945 36 H 0.398 0.602 37 H 0.121 0.879 38 H 0.116 0.884 39 H 0.077 0.923 40 H 0.035 0.965 41 H 0.027 0.973 42 H 0.083 0.917 43 H 0.071 0.929 44 H 0.064 0.936 45 H 0.062 0.938 46 H 0.056 0.944 47 H 0.071 0.929 48 H 0.064 0.936 49 H 0.073 0.927 50 H 0.029 0.971 51 H 0.111 0.889 52 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.058 -2.875 -30.305 30.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.106 4.106 3 H 0.086 0.914 4 C -0.044 4.044 5 C -0.554 4.554 6 H 0.092 0.908 7 C -0.136 4.136 8 N -0.542 5.542 9 Si 0.706 3.294 10 H -0.203 1.203 11 H -0.190 1.190 12 H -0.214 1.214 13 C 0.000 4.000 14 N -0.368 5.368 15 C 0.121 3.879 16 C -0.224 4.224 17 C -0.067 4.067 18 C -0.154 4.154 19 C -0.020 4.020 20 N -0.257 5.257 21 C -0.075 4.075 22 C -0.155 4.155 23 C -0.159 4.159 24 C -0.155 4.155 25 C -0.073 4.073 26 C -0.085 4.085 27 C -0.227 4.227 28 H 0.087 0.913 29 H 0.052 0.948 30 H 0.065 0.935 31 H 0.035 0.965 32 H 0.032 0.968 33 H 0.073 0.927 34 H 0.074 0.926 35 H 0.074 0.926 36 H 0.233 0.767 37 H 0.139 0.861 38 H 0.134 0.866 39 H 0.095 0.905 40 H 0.053 0.947 41 H 0.045 0.955 42 H 0.101 0.899 43 H 0.090 0.910 44 H 0.083 0.917 45 H 0.080 0.920 46 H 0.075 0.925 47 H 0.090 0.910 48 H 0.082 0.918 49 H 0.091 0.909 50 H 0.047 0.953 51 H 0.129 0.871 52 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 5.461 -3.102 -29.549 30.209 hybrid contribution -0.276 -0.305 -0.271 0.492 sum 5.185 -3.407 -29.820 30.458 Atomic orbital electron populations 1.21733 0.95482 1.01165 1.00706 1.21241 0.95978 0.99907 0.93498 0.91378 1.19568 0.96076 0.95862 0.92901 1.21079 1.35678 1.09614 0.89040 0.90846 1.25028 0.95589 0.97019 0.95931 1.69910 1.46989 1.39228 0.98077 0.86799 0.80642 0.84200 0.77772 1.20329 1.18987 1.21413 1.21632 0.99003 0.95185 0.84163 1.44981 1.61128 1.28009 1.02637 1.17924 0.92057 0.92435 0.85435 1.20675 1.05749 0.98005 0.97971 1.20668 0.96256 0.98455 0.91278 1.19271 1.04254 0.97633 0.94266 1.20856 0.88822 0.99198 0.93172 1.61945 1.25662 1.04399 1.33719 1.22154 0.96687 0.87997 1.00651 1.21587 0.96494 0.99130 0.98337 1.21582 1.00822 0.95653 0.97851 1.21580 0.96588 0.95697 1.01592 1.22082 0.95653 0.98908 0.90629 1.20639 0.96564 0.94999 0.96249 1.20498 1.08417 1.02279 0.91517 0.91257 0.94849 0.93531 0.96460 0.96807 0.92742 0.92602 0.92649 0.76690 0.86148 0.86559 0.90467 0.94710 0.95456 0.89865 0.91019 0.91746 0.91954 0.92518 0.91019 0.91783 0.90871 0.95267 0.87069 0.86623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.35 8.88 37.16 0.33 -2.02 16 2 C -0.09 -1.62 2.37 -90.62 -0.22 -1.83 16 3 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 4 C -0.01 -0.14 3.52 -27.88 -0.10 -0.24 16 5 C -0.52 -14.21 8.96 -34.44 -0.31 -14.52 16 6 H 0.07 2.17 7.30 -52.49 -0.38 1.78 16 7 C 0.07 1.88 5.47 -17.82 -0.10 1.78 16 8 N -0.90 -27.51 13.96 55.43 0.77 -26.74 16 9 Si 0.88 21.46 27.47 -169.99 -4.67 16.79 16 10 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 11 H -0.27 -6.21 6.54 56.52 0.37 -5.84 16 12 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 13 C 0.12 1.95 4.30 -4.04 -0.02 1.93 16 14 N -0.74 -10.33 5.46 -58.64 -0.32 -10.65 16 15 C 0.23 3.09 6.65 -83.79 -0.56 2.53 16 16 C -0.20 -2.69 9.31 -39.38 -0.37 -3.06 16 17 C -0.05 -0.57 9.69 -39.61 -0.38 -0.95 16 18 C -0.15 -1.68 4.89 -104.58 -0.51 -2.19 16 19 C 0.11 0.99 5.12 -4.97 -0.03 0.96 16 20 N -0.53 -4.96 4.65 -236.11 -1.10 -6.06 16 21 C 0.05 0.47 5.15 -3.84 -0.02 0.45 16 22 C -0.12 -0.95 6.09 -26.65 -0.16 -1.11 16 23 C -0.12 -0.84 6.00 -26.61 -0.16 -1.00 16 24 C -0.12 -0.82 6.09 -26.65 -0.16 -0.98 16 25 C 0.06 0.42 5.46 -3.83 -0.02 0.40 16 26 C -0.07 -0.72 7.86 -39.61 -0.31 -1.03 16 27 C -0.20 -2.47 9.90 -39.38 -0.39 -2.86 16 28 H 0.07 1.37 6.95 -51.93 -0.36 1.01 16 29 H 0.03 0.49 7.18 -51.92 -0.37 0.12 16 30 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 31 H 0.02 0.40 7.20 -51.93 -0.37 0.02 16 32 H 0.01 0.31 7.57 -51.93 -0.39 -0.08 16 33 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 34 H 0.06 0.89 7.94 -51.93 -0.41 0.48 16 35 H 0.06 0.87 7.96 -51.93 -0.41 0.45 16 36 H 0.40 5.16 7.67 -40.82 -0.31 4.85 16 37 H 0.12 1.61 6.73 -52.49 -0.35 1.26 16 38 H 0.12 1.23 8.06 -52.49 -0.42 0.81 16 39 H 0.08 0.66 7.93 -51.93 -0.41 0.25 16 40 H 0.03 0.31 8.07 -51.93 -0.42 -0.11 16 41 H 0.03 0.23 8.14 -51.93 -0.42 -0.19 16 42 H 0.08 0.84 5.75 -51.93 -0.30 0.54 16 43 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 44 H 0.06 0.46 8.14 -51.92 -0.42 0.04 16 45 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 46 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 47 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 48 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 49 H 0.07 0.52 8.02 -51.93 -0.42 0.10 16 50 H 0.03 0.22 8.14 -51.93 -0.42 -0.20 16 51 H 0.11 1.03 7.95 -52.49 -0.42 0.61 16 52 H 0.12 1.24 8.06 -52.48 -0.42 0.82 16 LS Contribution 398.05 15.07 6.00 6.00 Total: -1.00 -29.51 398.05 -12.37 -41.88 By element: Atomic # 1 Polarization: 12.08 SS G_CDS: -9.58 Total: 2.51 kcal Atomic # 6 Polarization: -20.25 SS G_CDS: -3.48 Total: -23.73 kcal Atomic # 7 Polarization: -42.80 SS G_CDS: -0.64 Total: -43.44 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -4.67 Total: 16.79 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -29.51 -12.37 -41.88 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001119450186.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.091 kcal (2) G-P(sol) polarization free energy of solvation -29.508 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.880 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.211 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds