Wall clock time and date at job start Tue Mar 31 2020 11:38:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08999 * 109.46863 * 2 1 4 4 C 1.52999 * 109.46921 * 119.99679 * 2 1 3 5 5 C 1.50702 * 109.47522 * 295.00468 * 4 2 1 6 6 H 1.08002 * 119.99446 * 359.97438 * 5 4 2 7 7 C 1.37871 * 120.00072 * 180.02562 * 5 4 2 8 8 N 1.31516 * 119.99826 * 179.72119 * 7 5 4 9 9 Si 1.86800 * 120.00406 * 359.97438 * 7 5 4 10 10 H 1.48501 * 109.46758 * 269.72576 * 9 7 5 11 11 H 1.48499 * 109.47026 * 29.72423 * 9 7 5 12 12 H 1.48496 * 109.47474 * 149.72459 * 9 7 5 13 13 C 1.52999 * 109.47239 * 239.99874 * 2 1 3 14 14 N 1.46497 * 109.47479 * 65.00221 * 13 2 1 15 15 C 1.39670 * 120.00372 * 179.97438 * 14 13 2 16 16 C 1.38906 * 120.07287 * 359.72128 * 15 14 13 17 17 C 1.38104 * 119.92519 * 179.77322 * 16 15 14 18 18 C 1.38288 * 120.07319 * 0.50401 * 17 16 15 19 19 C 1.50703 * 119.92697 * 179.72781 * 18 17 16 20 20 N 1.46901 * 109.46856 * 270.02342 * 19 18 17 21 21 C 1.46842 * 110.99931 * 294.20752 * 20 19 18 22 22 C 1.53033 * 109.52351 * 174.16297 * 21 20 19 23 23 C 1.53117 * 109.28018 * 59.18204 * 22 21 20 24 24 C 1.53118 * 109.15728 * 302.34225 * 23 22 21 25 25 C 1.46848 * 110.99825 * 169.99779 * 20 19 18 26 26 C 1.38285 * 120.14907 * 359.74776 * 18 17 16 27 27 C 1.38105 * 120.07239 * 359.97438 * 26 18 17 28 28 H 1.09001 * 109.47667 * 300.00120 * 1 2 3 29 29 H 1.09008 * 109.47037 * 60.00507 * 1 2 3 30 30 H 1.09007 * 109.47198 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47527 * 175.00066 * 4 2 1 32 32 H 1.09001 * 109.47054 * 55.00157 * 4 2 1 33 33 H 0.96999 * 120.00128 * 180.27192 * 8 7 5 34 34 H 1.09004 * 109.46992 * 185.00306 * 13 2 1 35 35 H 1.08999 * 109.47129 * 304.99562 * 13 2 1 36 36 H 0.97005 * 119.99255 * 359.97438 * 14 13 2 37 37 H 1.08001 * 120.03749 * 359.97438 * 16 15 14 38 38 H 1.07997 * 119.96873 * 180.25475 * 17 16 15 39 39 H 1.09001 * 109.46869 * 30.01762 * 19 18 17 40 40 H 1.08999 * 109.47461 * 150.01788 * 19 18 17 41 41 H 1.09002 * 109.46358 * 294.17876 * 21 20 19 42 42 H 1.09000 * 109.46462 * 54.14404 * 21 20 19 43 43 H 1.08998 * 109.50754 * 299.23434 * 22 21 20 44 44 H 1.09008 * 109.50608 * 179.11919 * 22 21 20 45 45 H 1.09005 * 109.52579 * 182.44286 * 23 22 21 46 46 H 1.08998 * 109.52387 * 62.24683 * 23 22 21 47 47 H 1.08994 * 109.50859 * 297.71816 * 24 23 22 48 48 H 1.08997 * 109.50497 * 177.59330 * 24 23 22 49 49 H 1.09000 * 109.46454 * 305.85655 * 25 20 19 50 50 H 1.08999 * 109.46334 * 65.82439 * 25 20 19 51 51 H 1.08000 * 119.96518 * 179.97438 * 26 18 17 52 52 H 1.08003 * 120.03455 * 179.97438 * 27 26 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 1.6412 0.0571 2.4767 6 1 1.0804 0.9746 2.3756 7 6 1.9930 -0.4017 3.7283 8 7 1.6498 0.2804 4.7991 9 14 2.9635 -1.9882 3.9029 10 1 2.0242 -3.1318 4.0269 11 1 3.8201 -2.1789 2.7051 12 1 3.8174 -1.9153 5.1156 13 6 2.0400 -0.7213 -1.2492 14 7 1.6525 0.0353 -2.4424 15 6 2.0091 -0.4295 -3.7103 16 6 2.7360 -1.6058 -3.8415 17 6 3.0829 -2.0650 -5.0969 18 6 2.7163 -1.3496 -6.2222 19 6 3.1019 -1.8505 -7.5902 20 7 4.4101 -1.2964 -7.9638 21 6 4.3369 0.1610 -8.1274 22 6 5.7407 0.7193 -8.3720 23 6 6.3290 0.0747 -9.6301 24 6 6.3493 -1.4461 -9.4530 25 6 4.9278 -1.9417 -9.1770 26 6 1.9970 -0.1754 -6.0949 27 6 1.6420 0.2864 -4.8427 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3634 -1.0277 0.0005 31 1 3.1262 -0.7995 1.2057 32 1 1.6053 -1.7197 1.2952 33 1 1.9007 -0.0402 5.6795 34 1 3.1263 -0.7995 -1.2055 35 1 1.6054 -1.7198 -1.2951 36 1 1.1483 0.8590 -2.3517 37 1 3.0269 -2.1624 -2.9629 38 1 3.6446 -2.9817 -5.1999 39 1 3.1590 -2.9389 -7.5758 40 1 2.3529 -1.5356 -8.3169 41 1 3.6980 0.3994 -8.9777 42 1 3.9208 0.6075 -7.2243 43 1 6.3765 0.4934 -7.5160 44 1 5.6841 1.7993 -8.5090 45 1 7.3455 0.4370 -9.7838 46 1 5.7149 0.3328 -10.4928 47 1 6.9945 -1.7062 -8.6139 48 1 6.7274 -1.9134 -10.3622 49 1 4.9409 -3.0225 -9.0363 50 1 4.2862 -1.6934 -10.0225 51 1 1.7126 0.3811 -6.9757 52 1 1.0806 1.2037 -4.7440 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001119450186.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:38:47 Heat of formation + Delta-G solvation = -13.219423 kcal Electronic energy + Delta-G solvation = -25778.763867 eV Core-core repulsion = 22354.822666 eV Total energy + Delta-G solvation = -3423.941201 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.71899 -39.59658 -38.10930 -35.86136 -34.58000 -33.70807 -31.91086 -31.59864 -30.67301 -29.28372 -27.59831 -26.19189 -24.50814 -24.10009 -23.70774 -22.92555 -21.50722 -20.85451 -20.53247 -18.98791 -18.12112 -17.08098 -16.89463 -16.50734 -16.13852 -15.98535 -15.77346 -15.34388 -15.19076 -14.99859 -14.65145 -14.55855 -14.51336 -14.19203 -14.11112 -14.04304 -13.90754 -13.49248 -13.27782 -13.03309 -12.86600 -12.70215 -12.60656 -12.28495 -12.17601 -12.06048 -11.76145 -11.68922 -11.64211 -11.55687 -11.35307 -11.26699 -11.16742 -11.12039 -10.74899 -10.73410 -9.72219 -9.17983 -8.26943 -8.17619 -6.29652 0.63331 0.74399 1.36451 1.38362 1.49639 2.37188 2.59492 2.86011 3.08451 3.32071 3.92511 3.94446 3.97277 4.02794 4.07967 4.13246 4.14547 4.22852 4.30640 4.36943 4.42737 4.53403 4.62279 4.65390 4.69275 4.72043 4.72807 4.76718 4.85130 4.87645 4.91929 4.97931 4.99364 5.05626 5.09086 5.10764 5.22445 5.23889 5.25617 5.33785 5.34404 5.46301 5.49720 5.52182 5.58359 5.63609 5.68829 5.87744 6.05352 6.21635 6.27800 6.30841 6.50874 6.77759 6.91805 7.34000 8.89440 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.022607 B = 0.002078 C = 0.002018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1238.284518 B =13473.739191 C =13872.051358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.081 4.081 3 H 0.058 0.942 4 C -0.005 4.005 5 C -0.519 4.519 6 H 0.037 0.963 7 C 0.001 3.999 8 N -0.952 5.952 9 Si 0.946 3.054 10 H -0.268 1.268 11 H -0.245 1.245 12 H -0.287 1.287 13 C 0.141 3.859 14 N -0.742 5.742 15 C 0.209 3.791 16 C -0.216 4.216 17 C -0.055 4.055 18 C -0.148 4.148 19 C 0.108 3.892 20 N -0.545 5.545 21 C 0.054 3.946 22 C -0.118 4.118 23 C -0.119 4.119 24 C -0.115 4.115 25 C 0.054 3.946 26 C -0.065 4.065 27 C -0.207 4.207 28 H 0.037 0.963 29 H 0.062 0.938 30 H 0.049 0.951 31 H 0.019 0.981 32 H 0.021 0.979 33 H 0.264 0.736 34 H 0.053 0.947 35 H 0.059 0.941 36 H 0.402 0.598 37 H 0.116 0.884 38 H 0.128 0.872 39 H 0.085 0.915 40 H 0.043 0.957 41 H 0.033 0.967 42 H 0.070 0.930 43 H 0.056 0.944 44 H 0.071 0.929 45 H 0.068 0.932 46 H 0.062 0.938 47 H 0.060 0.940 48 H 0.079 0.921 49 H 0.079 0.921 50 H 0.034 0.966 51 H 0.130 0.870 52 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.809 -4.258 -33.292 34.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.100 4.100 3 H 0.077 0.923 4 C -0.043 4.043 5 C -0.557 4.557 6 H 0.055 0.945 7 C -0.196 4.196 8 N -0.594 5.594 9 Si 0.770 3.230 10 H -0.193 1.193 11 H -0.169 1.169 12 H -0.213 1.213 13 C 0.016 3.984 14 N -0.371 5.371 15 C 0.104 3.896 16 C -0.239 4.239 17 C -0.074 4.074 18 C -0.150 4.150 19 C -0.018 4.018 20 N -0.270 5.270 21 C -0.074 4.074 22 C -0.155 4.155 23 C -0.157 4.157 24 C -0.153 4.153 25 C -0.073 4.073 26 C -0.085 4.085 27 C -0.230 4.230 28 H 0.057 0.943 29 H 0.081 0.919 30 H 0.068 0.932 31 H 0.038 0.962 32 H 0.039 0.961 33 H 0.073 0.927 34 H 0.071 0.929 35 H 0.077 0.923 36 H 0.238 0.762 37 H 0.134 0.866 38 H 0.145 0.855 39 H 0.103 0.897 40 H 0.061 0.939 41 H 0.051 0.949 42 H 0.088 0.912 43 H 0.075 0.925 44 H 0.090 0.910 45 H 0.087 0.913 46 H 0.081 0.919 47 H 0.079 0.921 48 H 0.098 0.902 49 H 0.097 0.903 50 H 0.052 0.948 51 H 0.148 0.852 52 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 6.213 -4.484 -32.582 33.470 hybrid contribution -0.536 0.207 0.566 0.807 sum 5.677 -4.277 -32.015 32.795 Atomic orbital electron populations 1.21642 0.94817 1.01340 1.00611 1.21068 0.96482 0.99177 0.93224 0.92344 1.19522 0.96203 0.95832 0.92759 1.21412 1.34464 1.08706 0.91105 0.94517 1.25996 0.97007 1.00966 0.95591 1.70067 1.49005 1.41544 0.98744 0.85712 0.79374 0.79559 0.78345 1.19296 1.16893 1.21324 1.21279 0.98639 0.94968 0.83504 1.44774 1.61843 1.28182 1.02284 1.18071 0.93019 0.93029 0.85461 1.20782 1.06349 0.98284 0.98476 1.20855 0.96395 0.99066 0.91112 1.19534 1.03245 0.97293 0.94974 1.20851 0.89151 0.99640 0.92198 1.61930 1.25629 1.04631 1.34832 1.22123 0.97161 0.87913 1.00179 1.21582 0.95843 0.99739 0.98378 1.21575 1.01244 0.95546 0.97338 1.21580 0.96047 0.95828 1.01863 1.22135 0.95937 0.99157 0.90076 1.20885 0.96001 0.95020 0.96553 1.20707 1.08241 1.02578 0.91454 0.94349 0.91910 0.93160 0.96248 0.96103 0.92683 0.92911 0.92281 0.76226 0.86619 0.85457 0.89684 0.93922 0.94882 0.91191 0.92525 0.90998 0.91286 0.91923 0.92130 0.90249 0.90292 0.94767 0.85177 0.85413 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.42 8.88 71.98 0.64 -3.78 16 2 C -0.08 -2.95 2.37 -10.80 -0.03 -2.98 16 3 H 0.06 2.24 8.14 -2.39 -0.02 2.22 16 4 C -0.01 -0.24 3.52 29.85 0.10 -0.13 16 5 C -0.52 -29.25 8.96 25.60 0.23 -29.02 16 6 H 0.04 2.27 7.30 -2.91 -0.02 2.25 16 7 C 0.00 0.04 5.47 84.65 0.46 0.50 16 8 N -0.95 -59.73 13.96 21.45 0.30 -59.43 16 9 Si 0.95 44.12 27.47 68.60 1.88 46.00 16 10 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 11 H -0.25 -10.57 6.54 99.48 0.65 -9.92 16 12 H -0.29 -13.27 7.11 99.48 0.71 -12.56 16 13 C 0.14 4.25 4.30 86.38 0.37 4.63 16 14 N -0.74 -19.76 5.46 -339.43 -1.85 -21.61 16 15 C 0.21 5.39 6.65 38.21 0.25 5.64 16 16 C -0.22 -5.54 9.31 22.40 0.21 -5.33 16 17 C -0.06 -1.24 9.69 22.25 0.22 -1.02 16 18 C -0.15 -2.99 4.89 -19.84 -0.10 -3.08 16 19 C 0.11 1.76 5.12 85.56 0.44 2.20 16 20 N -0.55 -9.07 4.65 -900.93 -4.19 -13.26 16 21 C 0.05 0.87 5.15 86.33 0.44 1.32 16 22 C -0.12 -1.72 6.09 30.64 0.19 -1.54 16 23 C -0.12 -1.42 6.00 30.67 0.18 -1.23 16 24 C -0.12 -1.38 6.09 30.65 0.19 -1.19 16 25 C 0.05 0.71 5.46 86.33 0.47 1.18 16 26 C -0.07 -1.30 7.86 22.25 0.17 -1.13 16 27 C -0.21 -4.65 9.90 22.40 0.22 -4.43 16 28 H 0.04 1.55 6.95 -2.39 -0.02 1.54 16 29 H 0.06 1.79 7.18 -2.38 -0.02 1.78 16 30 H 0.05 1.69 8.14 -2.38 -0.02 1.67 16 31 H 0.02 0.87 7.20 -2.39 -0.02 0.85 16 32 H 0.02 0.91 7.57 -2.39 -0.02 0.89 16 33 H 0.26 15.53 8.31 -92.71 -0.77 14.76 16 34 H 0.05 1.63 7.94 -2.38 -0.02 1.61 16 35 H 0.06 1.75 7.96 -2.39 -0.02 1.73 16 36 H 0.40 9.88 7.67 -92.70 -0.71 9.17 16 37 H 0.12 2.99 6.73 -2.91 -0.02 2.97 16 38 H 0.13 2.49 8.06 -2.91 -0.02 2.46 16 39 H 0.08 1.25 7.93 -2.39 -0.02 1.23 16 40 H 0.04 0.63 8.07 -2.39 -0.02 0.61 16 41 H 0.03 0.49 8.14 -2.39 -0.02 0.47 16 42 H 0.07 1.30 5.75 -2.39 -0.01 1.29 16 43 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 44 H 0.07 0.92 8.14 -2.38 -0.02 0.90 16 45 H 0.07 0.73 8.14 -2.38 -0.02 0.71 16 46 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 47 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 48 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 49 H 0.08 0.93 8.02 -2.39 -0.02 0.92 16 50 H 0.03 0.42 8.14 -2.39 -0.02 0.40 16 51 H 0.13 2.06 7.95 -2.91 -0.02 2.04 16 52 H 0.13 2.48 8.06 -2.91 -0.02 2.46 16 Total: -1.00 -64.27 398.05 0.91 -63.36 By element: Atomic # 1 Polarization: 24.23 SS G_CDS: 0.10 Total: 24.33 kcal Atomic # 6 Polarization: -44.07 SS G_CDS: 4.67 Total: -39.39 kcal Atomic # 7 Polarization: -88.55 SS G_CDS: -5.74 Total: -94.29 kcal Atomic # 14 Polarization: 44.12 SS G_CDS: 1.88 Total: 46.00 kcal Total: -64.27 0.91 -63.36 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001119450186.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.139 kcal (2) G-P(sol) polarization free energy of solvation -64.273 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.914 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.358 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.219 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds