Wall clock time and date at job start Tue Mar 31 2020 11:22:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53002 * 109.46960 * 2 1 4 4 N 1.46901 * 109.46748 * 179.71031 * 3 2 1 5 5 C 1.46904 * 110.99993 * 288.19286 * 4 3 2 6 6 C 1.50698 * 109.46825 * 160.35478 * 5 4 3 7 7 H 1.08001 * 120.00062 * 4.64850 * 6 5 4 8 8 C 1.37875 * 120.00033 * 184.64582 * 6 5 4 9 9 N 1.31516 * 119.99728 * 0.02562 * 8 6 5 10 10 Si 1.86795 * 120.00143 * 180.02562 * 8 6 5 11 11 H 1.48501 * 109.47362 * 0.02562 * 10 8 6 12 12 H 1.48502 * 109.47376 * 119.99895 * 10 8 6 13 13 H 1.48501 * 109.47289 * 240.00117 * 10 8 6 14 14 C 1.46896 * 110.99829 * 164.24110 * 4 3 2 15 15 C 1.50698 * 109.47070 * 293.95510 * 14 4 3 16 16 C 1.38285 * 119.92267 * 269.72198 * 15 14 4 17 17 C 1.38107 * 120.07331 * 179.72550 * 16 15 14 18 18 C 1.38913 * 119.92508 * 0.54685 * 17 16 15 19 19 N 1.39676 * 120.07699 * 179.70255 * 18 17 16 20 20 C 1.46846 * 110.99920 * 124.23721 * 19 18 17 21 21 C 1.53031 * 109.52529 * 174.16181 * 20 19 18 22 22 C 1.53118 * 109.27926 * 59.17630 * 21 20 19 23 23 C 1.53117 * 109.16267 * 302.35202 * 22 21 20 24 24 C 1.46840 * 110.99775 * 0.02650 * 19 18 17 25 25 C 1.38917 * 119.84820 * 359.73194 * 18 17 16 26 26 C 1.38100 * 119.92394 * 359.97438 * 25 18 17 27 27 H 1.08995 * 109.47016 * 59.99722 * 1 2 3 28 28 H 1.08997 * 109.47007 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47154 * 299.99823 * 1 2 3 30 30 H 1.09002 * 109.46829 * 240.00516 * 2 1 3 31 31 H 1.08995 * 109.47016 * 120.00278 * 2 1 3 32 32 H 1.09000 * 109.46665 * 59.71368 * 3 2 1 33 33 H 1.09000 * 109.47434 * 299.71373 * 3 2 1 34 34 H 1.08994 * 109.47156 * 280.35587 * 5 4 3 35 35 H 1.08998 * 109.47058 * 40.35896 * 5 4 3 36 36 H 0.97003 * 119.99570 * 179.97438 * 9 8 6 37 37 H 1.09007 * 109.46960 * 53.95467 * 14 4 3 38 38 H 1.08998 * 109.47458 * 173.95237 * 14 4 3 39 39 H 1.08002 * 119.96546 * 359.97438 * 16 15 14 40 40 H 1.07996 * 120.04128 * 180.27947 * 17 16 15 41 41 H 1.09005 * 109.46170 * 294.18045 * 20 19 18 42 42 H 1.09004 * 109.46120 * 54.14782 * 20 19 18 43 43 H 1.09010 * 109.50314 * 299.23796 * 21 20 19 44 44 H 1.08996 * 109.50596 * 179.12377 * 21 20 19 45 45 H 1.08996 * 109.52519 * 182.44229 * 22 21 20 46 46 H 1.09004 * 109.51835 * 62.25393 * 22 21 20 47 47 H 1.09006 * 109.50053 * 297.70890 * 23 22 21 48 48 H 1.09001 * 109.50692 * 177.59299 * 23 22 21 49 49 H 1.08992 * 109.46589 * 305.85412 * 24 19 18 50 50 H 1.08997 * 109.46158 * 65.82619 * 24 19 18 51 51 H 1.08000 * 120.03647 * 180.02562 * 25 18 17 52 52 H 1.08000 * 119.96116 * 180.02562 * 26 25 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5090 1.4425 0.0070 5 6 4.0292 1.0165 1.3131 6 6 5.4592 0.5657 1.1615 7 1 5.9579 0.6630 0.2084 8 6 6.1309 0.0291 2.2393 9 7 5.5234 -0.0899 3.3997 10 14 7.9036 -0.5291 2.0516 11 1 8.3532 -0.2887 0.6568 12 1 8.7655 0.2365 2.9877 13 1 8.0018 -1.9782 2.3610 14 6 4.0372 2.7617 -0.3652 15 6 3.6855 3.0569 -1.8005 16 6 4.5514 2.6867 -2.8131 17 6 4.2296 2.9506 -4.1299 18 6 3.0398 3.5990 -4.4360 19 7 2.7140 3.8731 -5.7663 20 6 1.4065 3.3036 -6.1159 21 6 1.0176 3.7449 -7.5287 22 6 2.0841 3.2684 -8.5187 23 6 3.4443 3.8361 -8.1041 24 6 3.7628 3.3922 -6.6746 25 6 2.1749 3.9747 -3.4158 26 6 2.5001 3.7022 -2.1016 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8934 -0.5138 -0.8901 31 1 1.8934 -0.5139 0.8899 32 1 1.6725 1.9578 0.8874 33 1 1.6809 1.9549 -0.8925 34 1 3.9837 1.8514 2.0122 35 1 3.4265 0.1914 1.6927 36 1 5.9959 -0.4677 4.1580 37 1 3.5998 3.5235 0.2802 38 1 5.1209 2.7653 -0.2485 39 1 5.4786 2.1869 -2.5742 40 1 4.9042 2.6572 -4.9206 41 1 1.4622 2.2156 -6.0777 42 1 0.6564 3.6538 -5.4067 43 1 0.9482 4.8322 -7.5641 44 1 0.0543 3.3094 -7.7938 45 1 1.8334 3.6178 -9.5203 46 1 2.1266 2.1792 -8.5119 47 1 3.4130 4.9249 -8.1486 48 1 4.2147 3.4658 -8.7804 49 1 4.7241 3.8066 -6.3713 50 1 3.8075 2.3039 -6.6339 51 1 1.2489 4.4786 -3.6503 52 1 1.8280 3.9937 -1.3081 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001138219873.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:22:10 Heat of formation + Delta-G solvation = 18.843432 kcal Electronic energy + Delta-G solvation = -26795.542806 eV Core-core repulsion = 23372.991955 eV Total energy + Delta-G solvation = -3422.550851 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.35995 -38.36925 -36.66013 -33.99195 -33.03916 -32.11963 -31.67049 -30.34766 -29.63939 -27.10512 -26.09443 -24.43161 -24.03329 -23.16864 -21.81047 -21.48844 -20.68392 -19.77557 -19.56653 -17.48082 -16.44948 -15.65157 -15.37346 -15.10808 -14.89309 -14.74868 -14.36579 -14.27303 -14.08918 -13.94492 -13.78124 -13.49208 -13.31194 -13.18455 -12.64053 -12.40587 -12.39659 -12.08030 -11.85762 -11.59955 -11.50589 -11.36296 -11.09094 -11.04169 -10.99400 -10.82492 -10.71013 -10.63572 -10.50788 -10.46620 -10.31958 -10.10189 -9.59655 -9.49785 -9.15145 -8.64503 -8.39438 -7.61906 -7.17543 -5.99711 -4.00344 1.60165 1.68272 3.32209 3.39742 3.44375 3.59465 4.04317 4.45489 4.48761 4.55014 4.64186 4.89532 5.04137 5.07576 5.10309 5.13815 5.25169 5.32508 5.34856 5.36921 5.40817 5.51543 5.52482 5.57837 5.58857 5.62068 5.71264 5.75091 5.80431 5.82089 5.89382 5.97866 5.99351 6.06617 6.07782 6.20774 6.31189 6.33815 6.39700 6.43792 6.51613 6.63849 6.74784 6.88119 6.95095 7.04085 7.07251 7.30279 7.38025 7.44854 7.86059 8.16456 8.25941 8.59031 9.07516 9.63536 11.10934 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.015155 B = 0.003040 C = 0.002710 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1847.087643 B = 9208.716410 C =10329.940329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.118 4.118 3 C 0.052 3.948 4 N -0.529 5.529 5 C 0.190 3.810 6 C -0.501 4.501 7 H 0.063 0.937 8 C 0.054 3.946 9 N -0.900 5.900 10 Si 0.895 3.105 11 H -0.272 1.272 12 H -0.286 1.286 13 H -0.285 1.285 14 C 0.099 3.901 15 C -0.082 4.082 16 C -0.072 4.072 17 C -0.171 4.171 18 C 0.097 3.903 19 N -0.488 5.488 20 C 0.058 3.942 21 C -0.118 4.118 22 C -0.123 4.123 23 C -0.118 4.118 24 C 0.050 3.950 25 C -0.142 4.142 26 C -0.094 4.094 27 H 0.047 0.953 28 H 0.049 0.951 29 H 0.049 0.951 30 H 0.063 0.937 31 H 0.068 0.932 32 H 0.019 0.981 33 H 0.064 0.936 34 H -0.012 1.012 35 H 0.037 0.963 36 H 0.260 0.740 37 H 0.027 0.973 38 H 0.088 0.912 39 H 0.125 0.875 40 H 0.121 0.879 41 H 0.041 0.959 42 H 0.080 0.920 43 H 0.071 0.929 44 H 0.068 0.932 45 H 0.064 0.936 46 H 0.060 0.940 47 H 0.071 0.929 48 H 0.068 0.932 49 H 0.082 0.918 50 H 0.044 0.956 51 H 0.117 0.883 52 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.125 7.637 -20.319 23.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.156 4.156 3 C -0.077 4.077 4 N -0.254 5.254 5 C 0.065 3.935 6 C -0.540 4.540 7 H 0.081 0.919 8 C -0.147 4.147 9 N -0.540 5.540 10 Si 0.723 3.277 11 H -0.197 1.197 12 H -0.212 1.212 13 H -0.211 1.211 14 C -0.028 4.028 15 C -0.083 4.083 16 C -0.091 4.091 17 C -0.192 4.192 18 C 0.000 4.000 19 N -0.204 5.204 20 C -0.068 4.068 21 C -0.156 4.156 22 C -0.161 4.161 23 C -0.156 4.156 24 C -0.077 4.077 25 C -0.162 4.162 26 C -0.113 4.113 27 H 0.066 0.934 28 H 0.069 0.931 29 H 0.068 0.932 30 H 0.082 0.918 31 H 0.086 0.914 32 H 0.037 0.963 33 H 0.082 0.918 34 H 0.006 0.994 35 H 0.055 0.945 36 H 0.069 0.931 37 H 0.045 0.955 38 H 0.107 0.893 39 H 0.143 0.857 40 H 0.139 0.861 41 H 0.060 0.940 42 H 0.099 0.901 43 H 0.090 0.910 44 H 0.087 0.913 45 H 0.083 0.917 46 H 0.079 0.921 47 H 0.089 0.911 48 H 0.087 0.913 49 H 0.100 0.900 50 H 0.062 0.938 51 H 0.135 0.865 52 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -8.988 7.745 -20.603 23.775 hybrid contribution 0.767 -0.547 0.808 1.241 sum -8.221 7.198 -19.795 22.610 Atomic orbital electron populations 1.21735 0.96829 1.00946 1.00986 1.21487 0.93852 0.97346 1.02933 1.22149 0.89903 0.96433 0.99195 1.62150 1.05005 1.24113 1.34089 1.19808 0.95762 0.94986 0.82910 1.21206 0.96597 1.39826 0.96329 0.91914 1.24984 0.98327 0.96120 0.95267 1.69969 1.36928 1.45994 1.01102 0.86483 0.84811 0.78271 0.78100 1.19678 1.21190 1.21096 1.20950 1.01522 0.90569 0.89782 1.19987 0.94219 0.97774 0.96324 1.20951 0.99477 0.97120 0.91526 1.21239 0.98401 1.02284 0.97255 1.18808 0.95490 0.96956 0.88732 1.59094 1.03574 1.56860 1.00891 1.22219 0.89899 0.97393 0.97294 1.21626 0.98304 1.01942 0.93757 1.21602 0.95117 1.00532 0.98827 1.21621 0.97133 1.01707 0.95137 1.22248 0.94920 0.98272 0.92220 1.20618 1.00072 1.03684 0.91875 1.20916 0.96365 0.98365 0.95654 0.93404 0.93149 0.93223 0.91825 0.91373 0.96301 0.91798 0.99438 0.94470 0.93065 0.95525 0.89337 0.85736 0.86125 0.94037 0.90127 0.91024 0.91294 0.91729 0.92129 0.91050 0.91287 0.89974 0.93776 0.86458 0.86433 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.06 9.91 37.16 0.37 -1.69 16 2 C -0.12 -2.08 6.00 -26.73 -0.16 -2.24 16 3 C 0.05 0.96 4.80 -3.82 -0.02 0.94 16 4 N -0.53 -11.39 4.37 -237.52 -1.04 -12.42 16 5 C 0.19 4.92 4.59 -4.97 -0.02 4.90 16 6 C -0.50 -13.98 8.61 -34.44 -0.30 -14.27 16 7 H 0.06 1.74 7.66 -52.49 -0.40 1.34 16 8 C 0.05 1.53 5.46 -17.82 -0.10 1.43 16 9 N -0.90 -26.74 13.29 55.43 0.74 -26.01 16 10 Si 0.90 21.68 29.54 -169.99 -5.02 16.66 16 11 H -0.27 -6.46 7.11 56.52 0.40 -6.05 16 12 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 13 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 14 C 0.10 1.93 4.94 -4.98 -0.02 1.90 16 15 C -0.08 -1.36 4.94 -104.59 -0.52 -1.88 16 16 C -0.07 -1.14 9.69 -39.61 -0.38 -1.52 16 17 C -0.17 -2.39 8.82 -39.38 -0.35 -2.74 16 18 C 0.10 1.29 5.64 -83.78 -0.47 0.82 16 19 N -0.49 -5.52 4.70 -171.16 -0.80 -6.32 16 20 C 0.06 0.56 5.26 -3.84 -0.02 0.54 16 21 C -0.12 -0.91 6.09 -26.65 -0.16 -1.07 16 22 C -0.12 -0.89 6.00 -26.61 -0.16 -1.05 16 23 C -0.12 -0.92 6.09 -26.65 -0.16 -1.08 16 24 C 0.05 0.49 4.15 -3.84 -0.02 0.48 16 25 C -0.14 -1.91 9.16 -39.38 -0.36 -2.27 16 26 C -0.09 -1.38 7.84 -39.62 -0.31 -1.69 16 27 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 31 H 0.07 1.35 6.52 -51.93 -0.34 1.02 16 32 H 0.02 0.36 8.05 -51.93 -0.42 -0.06 16 33 H 0.06 1.08 5.13 -51.93 -0.27 0.81 16 34 H -0.01 -0.34 8.00 -51.93 -0.42 -0.75 16 35 H 0.04 1.03 6.23 -51.93 -0.32 0.70 16 36 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 37 H 0.03 0.51 8.06 -51.93 -0.42 0.09 16 38 H 0.09 1.84 7.26 -51.93 -0.38 1.47 16 39 H 0.12 2.01 8.06 -52.49 -0.42 1.58 16 40 H 0.12 1.47 5.81 -52.49 -0.30 1.16 16 41 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16 42 H 0.08 0.77 6.70 -51.93 -0.35 0.42 16 43 H 0.07 0.57 8.14 -51.92 -0.42 0.14 16 44 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 45 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 46 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 47 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 48 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 49 H 0.08 0.81 6.98 -51.93 -0.36 0.44 16 50 H 0.04 0.44 7.74 -51.93 -0.40 0.04 16 51 H 0.12 1.36 7.15 -52.49 -0.38 0.99 16 52 H 0.12 1.61 7.73 -52.49 -0.41 1.20 16 LS Contribution 396.16 15.07 5.97 5.97 Total: -1.00 -29.78 396.16 -12.69 -42.46 By element: Atomic # 1 Polarization: 9.54 SS G_CDS: -9.37 Total: 0.17 kcal Atomic # 6 Polarization: -17.34 SS G_CDS: -3.16 Total: -20.51 kcal Atomic # 7 Polarization: -43.65 SS G_CDS: -1.11 Total: -44.75 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -29.78 -12.69 -42.46 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001138219873.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.306 kcal (2) G-P(sol) polarization free energy of solvation -29.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.531 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.463 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds