Wall clock time and date at job start Tue Mar 31 2020 11:22:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53002 * 109.46960 * 2 1 4 4 N 1.46901 * 109.46748 * 179.71031 * 3 2 1 5 5 C 1.46904 * 110.99993 * 288.19286 * 4 3 2 6 6 C 1.50698 * 109.46825 * 160.35478 * 5 4 3 7 7 H 1.08001 * 120.00062 * 4.64850 * 6 5 4 8 8 C 1.37875 * 120.00033 * 184.64582 * 6 5 4 9 9 N 1.31516 * 119.99728 * 0.02562 * 8 6 5 10 10 Si 1.86795 * 120.00143 * 180.02562 * 8 6 5 11 11 H 1.48501 * 109.47362 * 0.02562 * 10 8 6 12 12 H 1.48502 * 109.47376 * 119.99895 * 10 8 6 13 13 H 1.48501 * 109.47289 * 240.00117 * 10 8 6 14 14 C 1.46896 * 110.99829 * 164.24110 * 4 3 2 15 15 C 1.50698 * 109.47070 * 293.95510 * 14 4 3 16 16 C 1.38285 * 119.92267 * 269.72198 * 15 14 4 17 17 C 1.38107 * 120.07331 * 179.72550 * 16 15 14 18 18 C 1.38913 * 119.92508 * 0.54685 * 17 16 15 19 19 N 1.39676 * 120.07699 * 179.70255 * 18 17 16 20 20 C 1.46846 * 110.99920 * 124.23721 * 19 18 17 21 21 C 1.53031 * 109.52529 * 174.16181 * 20 19 18 22 22 C 1.53118 * 109.27926 * 59.17630 * 21 20 19 23 23 C 1.53117 * 109.16267 * 302.35202 * 22 21 20 24 24 C 1.46840 * 110.99775 * 0.02650 * 19 18 17 25 25 C 1.38917 * 119.84820 * 359.73194 * 18 17 16 26 26 C 1.38100 * 119.92394 * 359.97438 * 25 18 17 27 27 H 1.08995 * 109.47016 * 59.99722 * 1 2 3 28 28 H 1.08997 * 109.47007 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47154 * 299.99823 * 1 2 3 30 30 H 1.09002 * 109.46829 * 240.00516 * 2 1 3 31 31 H 1.08995 * 109.47016 * 120.00278 * 2 1 3 32 32 H 1.09000 * 109.46665 * 59.71368 * 3 2 1 33 33 H 1.09000 * 109.47434 * 299.71373 * 3 2 1 34 34 H 1.08994 * 109.47156 * 280.35587 * 5 4 3 35 35 H 1.08998 * 109.47058 * 40.35896 * 5 4 3 36 36 H 0.97003 * 119.99570 * 179.97438 * 9 8 6 37 37 H 1.09007 * 109.46960 * 53.95467 * 14 4 3 38 38 H 1.08998 * 109.47458 * 173.95237 * 14 4 3 39 39 H 1.08002 * 119.96546 * 359.97438 * 16 15 14 40 40 H 1.07996 * 120.04128 * 180.27947 * 17 16 15 41 41 H 1.09005 * 109.46170 * 294.18045 * 20 19 18 42 42 H 1.09004 * 109.46120 * 54.14782 * 20 19 18 43 43 H 1.09010 * 109.50314 * 299.23796 * 21 20 19 44 44 H 1.08996 * 109.50596 * 179.12377 * 21 20 19 45 45 H 1.08996 * 109.52519 * 182.44229 * 22 21 20 46 46 H 1.09004 * 109.51835 * 62.25393 * 22 21 20 47 47 H 1.09006 * 109.50053 * 297.70890 * 23 22 21 48 48 H 1.09001 * 109.50692 * 177.59299 * 23 22 21 49 49 H 1.08992 * 109.46589 * 305.85412 * 24 19 18 50 50 H 1.08997 * 109.46158 * 65.82619 * 24 19 18 51 51 H 1.08000 * 120.03647 * 180.02562 * 25 18 17 52 52 H 1.08000 * 119.96116 * 180.02562 * 26 25 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5090 1.4425 0.0070 5 6 4.0292 1.0165 1.3131 6 6 5.4592 0.5657 1.1615 7 1 5.9579 0.6630 0.2084 8 6 6.1309 0.0291 2.2393 9 7 5.5234 -0.0899 3.3997 10 14 7.9036 -0.5291 2.0516 11 1 8.3532 -0.2887 0.6568 12 1 8.7655 0.2365 2.9877 13 1 8.0018 -1.9782 2.3610 14 6 4.0372 2.7617 -0.3652 15 6 3.6855 3.0569 -1.8005 16 6 4.5514 2.6867 -2.8131 17 6 4.2296 2.9506 -4.1299 18 6 3.0398 3.5990 -4.4360 19 7 2.7140 3.8731 -5.7663 20 6 1.4065 3.3036 -6.1159 21 6 1.0176 3.7449 -7.5287 22 6 2.0841 3.2684 -8.5187 23 6 3.4443 3.8361 -8.1041 24 6 3.7628 3.3922 -6.6746 25 6 2.1749 3.9747 -3.4158 26 6 2.5001 3.7022 -2.1016 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8934 -0.5138 -0.8901 31 1 1.8934 -0.5139 0.8899 32 1 1.6725 1.9578 0.8874 33 1 1.6809 1.9549 -0.8925 34 1 3.9837 1.8514 2.0122 35 1 3.4265 0.1914 1.6927 36 1 5.9959 -0.4677 4.1580 37 1 3.5998 3.5235 0.2802 38 1 5.1209 2.7653 -0.2485 39 1 5.4786 2.1869 -2.5742 40 1 4.9042 2.6572 -4.9206 41 1 1.4622 2.2156 -6.0777 42 1 0.6564 3.6538 -5.4067 43 1 0.9482 4.8322 -7.5641 44 1 0.0543 3.3094 -7.7938 45 1 1.8334 3.6178 -9.5203 46 1 2.1266 2.1792 -8.5119 47 1 3.4130 4.9249 -8.1486 48 1 4.2147 3.4658 -8.7804 49 1 4.7241 3.8066 -6.3713 50 1 3.8075 2.3039 -6.6339 51 1 1.2489 4.4786 -3.6503 52 1 1.8280 3.9937 -1.3081 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001138219873.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:22:09 Heat of formation + Delta-G solvation = 3.383097 kcal Electronic energy + Delta-G solvation = -26796.213216 eV Core-core repulsion = 23372.991955 eV Total energy + Delta-G solvation = -3423.221261 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.33903 -39.57193 -38.04924 -34.99554 -34.91430 -33.69028 -32.54358 -31.30128 -30.96982 -28.98342 -27.32753 -25.71783 -24.95850 -24.59963 -23.20641 -22.61892 -21.77100 -21.20017 -20.53190 -18.58778 -18.43268 -16.95830 -16.64314 -16.51503 -16.08087 -15.94098 -15.78629 -15.43423 -15.19002 -14.98942 -14.87478 -14.68121 -14.38798 -14.19357 -14.06679 -13.85375 -13.57225 -13.31084 -13.26381 -13.03309 -12.85353 -12.70770 -12.59199 -12.31610 -12.24447 -12.14115 -12.00456 -11.86033 -11.71980 -11.68183 -11.37674 -11.29911 -11.27117 -11.22000 -10.59344 -10.47189 -9.79541 -9.00221 -8.64710 -8.18811 -6.28189 0.44142 0.53203 1.39623 1.40108 1.53708 2.40250 2.63811 2.93787 3.12907 3.48304 3.79955 3.85485 3.97634 4.01357 4.04439 4.10261 4.11607 4.20763 4.27065 4.38554 4.43645 4.52262 4.53008 4.55087 4.63894 4.66868 4.67657 4.77212 4.77742 4.84856 4.87547 4.93374 4.95986 4.98703 5.12108 5.14028 5.16251 5.18822 5.22525 5.25934 5.29238 5.36503 5.38976 5.44496 5.46153 5.47745 5.68731 5.85106 5.85741 6.10490 6.11525 6.37801 6.42352 6.66573 6.87359 7.40911 8.91909 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.015155 B = 0.003040 C = 0.002710 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1847.087643 B = 9208.716410 C =10329.940329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.116 4.116 3 C 0.054 3.946 4 N -0.536 5.536 5 C 0.207 3.793 6 C -0.516 4.516 7 H 0.059 0.941 8 C 0.001 3.999 9 N -0.935 5.935 10 Si 0.966 3.034 11 H -0.264 1.264 12 H -0.279 1.279 13 H -0.279 1.279 14 C 0.106 3.894 15 C -0.102 4.102 16 C -0.085 4.085 17 C -0.173 4.173 18 C 0.103 3.897 19 N -0.491 5.491 20 C 0.055 3.945 21 C -0.114 4.114 22 C -0.123 4.123 23 C -0.114 4.114 24 C 0.046 3.954 25 C -0.140 4.140 26 C -0.093 4.093 27 H 0.067 0.933 28 H 0.063 0.937 29 H 0.052 0.948 30 H 0.057 0.943 31 H 0.035 0.965 32 H 0.014 0.986 33 H 0.087 0.913 34 H -0.042 1.042 35 H 0.013 0.987 36 H 0.263 0.737 37 H 0.026 0.974 38 H 0.064 0.936 39 H 0.113 0.887 40 H 0.137 0.863 41 H 0.034 0.966 42 H 0.084 0.916 43 H 0.071 0.929 44 H 0.084 0.916 45 H 0.079 0.921 46 H 0.059 0.941 47 H 0.069 0.931 48 H 0.082 0.918 49 H 0.079 0.921 50 H 0.041 0.959 51 H 0.141 0.859 52 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.018 8.125 -23.186 26.532 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.154 4.154 3 C -0.074 4.074 4 N -0.260 5.260 5 C 0.081 3.919 6 C -0.554 4.554 7 H 0.078 0.922 8 C -0.197 4.197 9 N -0.576 5.576 10 Si 0.791 3.209 11 H -0.188 1.188 12 H -0.204 1.204 13 H -0.204 1.204 14 C -0.022 4.022 15 C -0.103 4.103 16 C -0.104 4.104 17 C -0.194 4.194 18 C 0.006 3.994 19 N -0.207 5.207 20 C -0.070 4.070 21 C -0.152 4.152 22 C -0.160 4.160 23 C -0.152 4.152 24 C -0.081 4.081 25 C -0.160 4.160 26 C -0.112 4.112 27 H 0.086 0.914 28 H 0.082 0.918 29 H 0.071 0.929 30 H 0.076 0.924 31 H 0.054 0.946 32 H 0.032 0.968 33 H 0.105 0.895 34 H -0.024 1.024 35 H 0.031 0.969 36 H 0.072 0.928 37 H 0.044 0.956 38 H 0.082 0.918 39 H 0.131 0.869 40 H 0.155 0.845 41 H 0.053 0.947 42 H 0.102 0.898 43 H 0.089 0.911 44 H 0.102 0.898 45 H 0.098 0.902 46 H 0.078 0.922 47 H 0.088 0.912 48 H 0.101 0.899 49 H 0.097 0.903 50 H 0.059 0.941 51 H 0.158 0.842 52 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -9.896 8.244 -23.502 26.800 hybrid contribution 0.999 -0.641 1.604 1.996 sum -8.897 7.603 -21.897 24.829 Atomic orbital electron populations 1.21663 0.93507 1.02279 1.02121 1.21454 0.96735 0.96172 1.00998 1.22234 0.87898 0.97348 0.99926 1.62096 1.07039 1.25762 1.31119 1.19435 0.95012 0.93009 0.84451 1.21480 0.97658 1.39964 0.96315 0.92244 1.25880 1.02922 0.96053 0.94805 1.70092 1.38858 1.46738 1.01931 0.85381 0.79194 0.77881 0.78452 1.18807 1.20436 1.20427 1.20823 0.99919 0.89375 0.92048 1.19724 0.95880 1.00267 0.94432 1.20937 0.99194 0.97779 0.92471 1.21374 0.99181 1.02179 0.96647 1.19024 0.94895 0.95489 0.90020 1.59141 1.04746 1.56775 0.99996 1.22320 0.88965 0.96940 0.98825 1.21621 0.99183 1.01977 0.92414 1.21619 0.94497 1.00465 0.99463 1.21613 0.98078 1.01602 0.93902 1.22344 0.94452 0.98100 0.93185 1.20835 1.00833 1.03181 0.91123 1.20987 0.95593 0.97838 0.96748 0.91434 0.91789 0.92850 0.92427 0.94585 0.96804 0.89493 1.02448 0.96872 0.92776 0.95615 0.91786 0.86936 0.84549 0.94718 0.89788 0.91051 0.89765 0.90238 0.92228 0.91247 0.89907 0.90274 0.94056 0.84151 0.85410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.66 9.91 71.98 0.71 -2.94 16 2 C -0.12 -4.13 6.00 30.60 0.18 -3.95 16 3 C 0.05 2.02 4.80 86.30 0.41 2.43 16 4 N -0.54 -24.06 4.37 -905.37 -3.96 -28.02 16 5 C 0.21 11.33 4.59 85.56 0.39 11.72 16 6 C -0.52 -29.94 8.61 25.60 0.22 -29.72 16 7 H 0.06 3.41 7.66 -2.91 -0.02 3.39 16 8 C 0.00 0.06 5.46 84.65 0.46 0.52 16 9 N -0.94 -57.25 13.29 21.45 0.28 -56.97 16 10 Si 0.97 45.23 29.54 68.60 2.03 47.26 16 11 H -0.26 -11.90 7.11 99.48 0.71 -11.19 16 12 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 13 H -0.28 -12.71 7.11 99.48 0.71 -12.01 16 14 C 0.11 4.29 4.94 85.56 0.42 4.71 16 15 C -0.10 -3.42 4.94 -19.84 -0.10 -3.52 16 16 C -0.08 -2.73 9.69 22.25 0.22 -2.51 16 17 C -0.17 -4.68 8.82 22.40 0.20 -4.48 16 18 C 0.10 2.57 5.64 38.22 0.22 2.78 16 19 N -0.49 -9.96 4.70 -695.42 -3.27 -13.23 16 20 C 0.05 0.92 5.26 86.32 0.45 1.37 16 21 C -0.11 -1.40 6.09 30.64 0.19 -1.22 16 22 C -0.12 -1.40 6.00 30.67 0.18 -1.21 16 23 C -0.11 -1.47 6.09 30.65 0.19 -1.29 16 24 C 0.05 0.80 4.15 86.33 0.36 1.16 16 25 C -0.14 -3.43 9.16 22.40 0.21 -3.23 16 26 C -0.09 -2.61 7.84 22.25 0.17 -2.44 16 27 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 28 H 0.06 1.52 8.14 -2.39 -0.02 1.51 16 29 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 30 H 0.06 2.09 8.14 -2.39 -0.02 2.08 16 31 H 0.04 1.50 6.52 -2.39 -0.02 1.48 16 32 H 0.01 0.53 8.05 -2.39 -0.02 0.51 16 33 H 0.09 2.86 5.13 -2.39 -0.01 2.85 16 34 H -0.04 -2.50 8.00 -2.39 -0.02 -2.52 16 35 H 0.01 0.78 6.23 -2.39 -0.01 0.76 16 36 H 0.26 15.12 8.31 -92.71 -0.77 14.35 16 37 H 0.03 1.02 8.06 -2.38 -0.02 1.00 16 38 H 0.06 2.84 7.26 -2.39 -0.02 2.83 16 39 H 0.11 3.80 8.06 -2.91 -0.02 3.77 16 40 H 0.14 3.17 5.81 -2.91 -0.02 3.15 16 41 H 0.03 0.64 8.14 -2.38 -0.02 0.62 16 42 H 0.08 1.35 6.70 -2.38 -0.02 1.33 16 43 H 0.07 0.91 8.14 -2.38 -0.02 0.89 16 44 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 45 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 46 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 47 H 0.07 0.94 8.14 -2.38 -0.02 0.92 16 48 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 49 H 0.08 1.42 6.98 -2.39 -0.02 1.40 16 50 H 0.04 0.75 7.74 -2.39 -0.02 0.73 16 51 H 0.14 2.80 7.15 -2.91 -0.02 2.78 16 52 H 0.13 3.29 7.73 -2.91 -0.02 3.27 16 Total: -1.00 -65.99 396.16 1.03 -64.95 By element: Atomic # 1 Polarization: 16.93 SS G_CDS: 0.86 Total: 17.80 kcal Atomic # 6 Polarization: -36.88 SS G_CDS: 5.09 Total: -31.79 kcal Atomic # 7 Polarization: -91.27 SS G_CDS: -6.94 Total: -98.21 kcal Atomic # 14 Polarization: 45.23 SS G_CDS: 2.03 Total: 47.26 kcal Total: -65.99 1.03 -64.95 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001138219873.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.334 kcal (2) G-P(sol) polarization free energy of solvation -65.985 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.349 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.951 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.383 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds