Wall clock time and date at job start Tue Mar 31 2020 11:22:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.47180 * 2 1 4 4 N 1.46900 * 109.47072 * 182.22415 * 3 2 1 5 5 C 1.46894 * 111.00462 * 299.26806 * 4 3 2 6 6 C 1.50700 * 109.47011 * 288.87644 * 5 4 3 7 7 H 1.08006 * 119.99784 * 1.30474 * 6 5 4 8 8 C 1.37876 * 120.00556 * 181.30335 * 6 5 4 9 9 N 1.31508 * 120.00496 * 180.02562 * 8 6 5 10 10 Si 1.86808 * 119.99682 * 359.97438 * 8 6 5 11 11 H 1.48506 * 109.46838 * 89.99667 * 10 8 6 12 12 H 1.48499 * 109.47284 * 209.99846 * 10 8 6 13 13 H 1.48502 * 109.46869 * 330.00041 * 10 8 6 14 14 C 1.46905 * 110.99461 * 63.21762 * 4 3 2 15 15 C 1.50698 * 109.47052 * 66.04748 * 14 4 3 16 16 C 1.38123 * 120.03785 * 259.99621 * 15 14 4 17 17 C 1.38267 * 120.07833 * 180.02562 * 16 15 14 18 18 C 1.38308 * 120.14505 * 0.02562 * 17 16 15 19 19 C 1.38079 * 120.08075 * 359.97438 * 18 17 16 20 20 C 1.38893 * 120.03884 * 79.99685 * 15 14 4 21 21 N 1.39673 * 120.07307 * 0.02562 * 20 15 14 22 22 C 1.46853 * 110.99862 * 244.16381 * 21 20 15 23 23 C 1.53035 * 109.52229 * 174.15893 * 22 21 20 24 24 C 1.53122 * 109.27484 * 59.18324 * 23 22 21 25 25 C 1.53123 * 109.16119 * 302.34058 * 24 23 22 26 26 C 1.46847 * 110.99926 * 119.95616 * 21 20 15 27 27 H 1.08997 * 109.47302 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47056 * 299.99533 * 1 2 3 29 29 H 1.09001 * 109.47554 * 59.99484 * 1 2 3 30 30 H 1.09001 * 109.46641 * 240.00125 * 2 1 3 31 31 H 1.09002 * 109.46843 * 120.00310 * 2 1 3 32 32 H 1.09001 * 109.46587 * 62.23196 * 3 2 1 33 33 H 1.08997 * 109.47289 * 302.22799 * 3 2 1 34 34 H 1.09006 * 109.47433 * 48.87442 * 5 4 3 35 35 H 1.08994 * 109.47412 * 168.87771 * 5 4 3 36 36 H 0.97004 * 120.00168 * 179.97438 * 9 8 6 37 37 H 1.08996 * 109.47210 * 306.04677 * 14 4 3 38 38 H 1.09003 * 109.46904 * 186.04401 * 14 4 3 39 39 H 1.08001 * 119.96282 * 0.28112 * 16 15 14 40 40 H 1.07997 * 119.92888 * 180.02562 * 17 16 15 41 41 H 1.08003 * 119.95746 * 179.97438 * 18 17 16 42 42 H 1.07994 * 120.04313 * 180.02562 * 19 18 17 43 43 H 1.09000 * 109.46264 * 294.17678 * 22 21 20 44 44 H 1.09001 * 109.46272 * 54.14863 * 22 21 20 45 45 H 1.09000 * 109.50924 * 299.24500 * 23 22 21 46 46 H 1.08993 * 109.53854 * 179.14145 * 23 22 21 47 47 H 1.09006 * 109.52513 * 182.43975 * 24 23 22 48 48 H 1.08995 * 109.58004 * 62.28224 * 24 23 22 49 49 H 1.08992 * 109.50628 * 297.71517 * 25 24 23 50 50 H 1.08998 * 109.53653 * 177.61537 * 25 24 23 51 51 H 1.08990 * 109.46254 * 305.85869 * 26 21 20 52 52 H 1.08997 * 109.46128 * 65.83229 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5080 1.4428 -0.0538 5 6 4.0778 0.7571 1.1137 6 6 3.8734 1.6042 2.3431 7 1 3.3519 2.5471 2.2686 8 6 4.3520 1.1758 3.5631 9 7 4.1732 1.9149 4.6360 10 14 5.2534 -0.4553 3.6921 11 1 6.7066 -0.2361 3.4786 12 1 5.0334 -1.0372 5.0406 13 1 4.7367 -1.3893 2.6597 14 6 3.9890 0.8408 -1.3045 15 6 3.5875 1.7107 -2.4676 16 6 2.4860 1.3782 -3.2319 17 6 2.1172 2.1755 -4.2996 18 6 2.8495 3.3079 -4.6065 19 6 3.9517 3.6462 -3.8467 20 6 4.3245 2.8478 -2.7724 21 7 5.4392 3.1868 -2.0020 22 6 5.2296 4.4628 -1.3061 23 6 6.4045 4.7297 -0.3625 24 6 7.7030 4.7761 -1.1727 25 6 7.8729 3.4538 -1.9258 26 6 6.6554 3.2238 -2.8241 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 1.8932 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 1.7097 1.9445 0.9094 33 1 1.6445 1.9677 -0.8693 34 1 3.5819 -0.2043 1.2483 35 1 5.1443 0.5967 0.9562 36 1 4.5096 1.6132 5.4944 37 1 3.5502 -0.1499 -1.4232 38 1 5.0753 0.7556 -1.2725 39 1 1.9098 0.4966 -2.9927 40 1 1.2553 1.9134 -4.8953 41 1 2.5589 3.9283 -5.4414 42 1 4.5229 4.5308 -4.0865 43 1 5.1607 5.2683 -2.0373 44 1 4.3052 4.4150 -0.7304 45 1 6.4656 3.9317 0.3775 46 1 6.2566 5.6841 0.1428 47 1 8.5475 4.9229 -0.4993 48 1 7.6590 5.5988 -1.8864 49 1 7.9571 2.6358 -1.2105 50 1 8.7739 3.4961 -2.5379 51 1 6.7666 2.2762 -3.3510 52 1 6.5799 4.0352 -3.5480 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001138605080.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:22:13 Heat of formation + Delta-G solvation = 29.036015 kcal Electronic energy + Delta-G solvation = -28425.404639 eV Core-core repulsion = 25003.295772 eV Total energy + Delta-G solvation = -3422.108867 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.17478 -38.00954 -37.01306 -33.50836 -32.69454 -32.39602 -30.98050 -30.58123 -29.05112 -27.54405 -26.05359 -24.30721 -23.54880 -22.80767 -22.05013 -21.74270 -20.70703 -19.32523 -19.00227 -17.00250 -16.62021 -15.62185 -15.44630 -15.09428 -14.67549 -14.64325 -14.37540 -14.12103 -13.95115 -13.70586 -13.37400 -13.21705 -13.18386 -12.85986 -12.75383 -12.44449 -12.16184 -11.87305 -11.82182 -11.48655 -11.45703 -11.17865 -10.99662 -10.97086 -10.93189 -10.76498 -10.49827 -10.46187 -10.25354 -10.23869 -10.10593 -9.79605 -9.75443 -9.19456 -8.64988 -8.47568 -8.33531 -8.08441 -7.08892 -5.96620 -3.91352 1.49016 1.56287 3.33155 3.40562 3.42709 3.88269 4.06362 4.49126 4.95759 5.02392 5.04335 5.06077 5.10421 5.15536 5.23441 5.37481 5.45778 5.47554 5.49945 5.53469 5.58432 5.61775 5.69699 5.78229 5.83106 5.84568 5.89293 5.97624 6.05805 6.08482 6.13514 6.15116 6.20409 6.28443 6.34879 6.39140 6.43282 6.48700 6.51259 6.58307 6.62135 6.65065 6.74936 6.85214 6.94105 7.06605 7.09297 7.15670 7.32384 7.73415 7.77166 8.06153 8.22395 8.78283 9.14098 9.66668 11.16867 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.009859 B = 0.005997 C = 0.004167 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2839.298105 B = 4668.078542 C = 6717.447767 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.164 4.164 3 C 0.064 3.936 4 N -0.504 5.504 5 C 0.161 3.839 6 C -0.494 4.494 7 H 0.079 0.921 8 C 0.068 3.932 9 N -0.904 5.904 10 Si 0.870 3.130 11 H -0.277 1.277 12 H -0.289 1.289 13 H -0.269 1.269 14 C 0.097 3.903 15 C -0.041 4.041 16 C -0.112 4.112 17 C -0.128 4.128 18 C -0.120 4.120 19 C -0.154 4.154 20 C 0.114 3.886 21 N -0.485 5.485 22 C 0.075 3.925 23 C -0.117 4.117 24 C -0.119 4.119 25 C -0.116 4.116 26 C 0.062 3.938 27 H 0.044 0.956 28 H 0.055 0.945 29 H 0.046 0.954 30 H 0.051 0.949 31 H 0.071 0.929 32 H 0.081 0.919 33 H 0.055 0.945 34 H -0.008 1.008 35 H 0.021 0.979 36 H 0.261 0.739 37 H 0.027 0.973 38 H 0.082 0.918 39 H 0.119 0.881 40 H 0.116 0.884 41 H 0.114 0.886 42 H 0.113 0.887 43 H 0.022 0.978 44 H 0.086 0.914 45 H 0.085 0.915 46 H 0.063 0.937 47 H 0.060 0.940 48 H 0.051 0.949 49 H 0.074 0.926 50 H 0.060 0.940 51 H 0.069 0.931 52 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.597 1.927 -17.909 18.022 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.203 4.203 3 C -0.065 4.065 4 N -0.226 5.226 5 C 0.035 3.965 6 C -0.532 4.532 7 H 0.097 0.903 8 C -0.133 4.133 9 N -0.544 5.544 10 Si 0.698 3.302 11 H -0.203 1.203 12 H -0.215 1.215 13 H -0.194 1.194 14 C -0.031 4.031 15 C -0.042 4.042 16 C -0.131 4.131 17 C -0.146 4.146 18 C -0.139 4.139 19 C -0.175 4.175 20 C 0.020 3.980 21 N -0.207 5.207 22 C -0.051 4.051 23 C -0.155 4.155 24 C -0.157 4.157 25 C -0.154 4.154 26 C -0.065 4.065 27 H 0.063 0.937 28 H 0.074 0.926 29 H 0.066 0.934 30 H 0.070 0.930 31 H 0.089 0.911 32 H 0.099 0.901 33 H 0.073 0.927 34 H 0.010 0.990 35 H 0.039 0.961 36 H 0.071 0.929 37 H 0.045 0.955 38 H 0.101 0.899 39 H 0.137 0.863 40 H 0.134 0.866 41 H 0.132 0.868 42 H 0.131 0.869 43 H 0.040 0.960 44 H 0.105 0.895 45 H 0.103 0.897 46 H 0.082 0.918 47 H 0.079 0.921 48 H 0.070 0.930 49 H 0.093 0.907 50 H 0.079 0.921 51 H 0.088 0.912 52 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges 0.913 2.074 -17.300 17.448 hybrid contribution 0.093 -1.056 -0.456 1.154 sum 1.006 1.019 -17.756 17.814 Atomic orbital electron populations 1.21650 0.96390 1.00604 1.01412 1.22196 0.95682 1.00703 1.01758 1.22096 0.88477 0.94095 1.01786 1.62138 1.05947 1.54064 1.00464 1.20207 0.94156 0.93135 0.88997 1.20993 1.36014 1.06540 0.89684 0.90333 1.24856 0.96032 0.96597 0.95822 1.69891 1.47340 1.37872 0.99274 0.86945 0.80747 0.85251 0.77275 1.20305 1.21496 1.19383 1.20927 1.00757 0.92822 0.88578 1.19878 0.93767 0.94807 0.95761 1.21043 0.96571 1.00009 0.95473 1.21036 0.99927 0.95612 0.98010 1.20885 0.95856 0.97413 0.99776 1.21617 0.98409 1.00155 0.97282 1.18578 0.92946 0.94293 0.92201 1.59365 1.00337 1.32957 1.27992 1.22008 1.00168 0.87133 0.95769 1.21576 0.93178 1.02455 0.98292 1.21570 0.98397 0.96876 0.98813 1.21573 0.96198 0.98672 0.98920 1.22103 0.89953 1.00267 0.94160 0.93708 0.92615 0.93442 0.93030 0.91082 0.90108 0.92669 0.99040 0.96110 0.92907 0.95542 0.89946 0.86287 0.86596 0.86802 0.86912 0.96021 0.89543 0.89654 0.91814 0.92075 0.92992 0.90701 0.92102 0.91243 0.95330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.04 9.91 37.16 0.37 -1.67 16 2 C -0.16 -2.79 5.29 -26.73 -0.14 -2.93 16 3 C 0.06 1.20 4.96 -3.82 -0.02 1.19 16 4 N -0.50 -10.21 4.65 -237.52 -1.11 -11.31 16 5 C 0.16 3.82 3.63 -4.98 -0.02 3.80 16 6 C -0.49 -13.72 9.14 -34.44 -0.31 -14.04 16 7 H 0.08 2.40 7.65 -52.48 -0.40 2.00 16 8 C 0.07 1.94 5.47 -17.82 -0.10 1.84 16 9 N -0.90 -27.57 13.96 55.43 0.77 -26.80 16 10 Si 0.87 21.58 27.44 -169.99 -4.66 16.91 16 11 H -0.28 -6.80 7.11 56.52 0.40 -6.39 16 12 H -0.29 -7.16 7.11 56.52 0.40 -6.75 16 13 H -0.27 -6.45 6.58 56.52 0.37 -6.07 16 14 C 0.10 1.69 4.53 -4.97 -0.02 1.67 16 15 C -0.04 -0.63 4.60 -104.42 -0.48 -1.11 16 16 C -0.11 -1.52 8.64 -39.61 -0.34 -1.86 16 17 C -0.13 -1.54 10.04 -39.55 -0.40 -1.93 16 18 C -0.12 -1.44 10.04 -39.61 -0.40 -1.83 16 19 C -0.15 -2.04 8.70 -39.38 -0.34 -2.38 16 20 C 0.11 1.71 4.66 -83.78 -0.39 1.32 16 21 N -0.49 -7.33 3.77 -171.15 -0.64 -7.97 16 22 C 0.08 1.15 5.17 -3.83 -0.02 1.13 16 23 C -0.12 -1.73 6.09 -26.65 -0.16 -1.89 16 24 C -0.12 -1.46 6.00 -26.60 -0.16 -1.62 16 25 C -0.12 -1.41 6.09 -26.65 -0.16 -1.57 16 26 C 0.06 0.79 5.11 -3.83 -0.02 0.77 16 27 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 29 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.05 0.82 5.99 -51.93 -0.31 0.50 16 31 H 0.07 1.38 6.31 -51.93 -0.33 1.06 16 32 H 0.08 1.73 7.17 -51.93 -0.37 1.36 16 33 H 0.05 0.97 6.46 -51.93 -0.34 0.64 16 34 H -0.01 -0.19 5.01 -51.93 -0.26 -0.45 16 35 H 0.02 0.51 7.19 -51.93 -0.37 0.14 16 36 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 37 H 0.03 0.45 5.92 -51.93 -0.31 0.14 16 38 H 0.08 1.51 7.52 -51.93 -0.39 1.12 16 39 H 0.12 1.51 7.78 -52.49 -0.41 1.10 16 40 H 0.12 1.12 8.06 -52.49 -0.42 0.70 16 41 H 0.11 1.09 8.06 -52.48 -0.42 0.67 16 42 H 0.11 1.36 7.13 -52.49 -0.37 0.99 16 43 H 0.02 0.30 7.55 -51.93 -0.39 -0.09 16 44 H 0.09 1.54 8.11 -51.93 -0.42 1.12 16 45 H 0.08 1.52 8.14 -51.93 -0.42 1.10 16 46 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 47 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 48 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 49 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 50 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 51 H 0.07 0.88 8.11 -51.93 -0.42 0.46 16 52 H 0.03 0.34 7.33 -51.93 -0.38 -0.04 16 LS Contribution 391.63 15.07 5.90 5.90 Total: -1.00 -29.31 391.63 -12.15 -41.46 By element: Atomic # 1 Polarization: 12.23 SS G_CDS: -9.29 Total: 2.94 kcal Atomic # 6 Polarization: -18.00 SS G_CDS: -3.12 Total: -21.12 kcal Atomic # 7 Polarization: -45.11 SS G_CDS: -0.98 Total: -46.09 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -4.66 Total: 16.91 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -29.31 -12.15 -41.46 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001138605080.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.494 kcal (2) G-P(sol) polarization free energy of solvation -29.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.151 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.458 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds