Wall clock time and date at job start Tue Mar 31 2020 11:22:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.47180 * 2 1 4 4 N 1.46900 * 109.47072 * 182.22415 * 3 2 1 5 5 C 1.46894 * 111.00462 * 299.26806 * 4 3 2 6 6 C 1.50700 * 109.47011 * 288.87644 * 5 4 3 7 7 H 1.08006 * 119.99784 * 1.30474 * 6 5 4 8 8 C 1.37876 * 120.00556 * 181.30335 * 6 5 4 9 9 N 1.31508 * 120.00496 * 180.02562 * 8 6 5 10 10 Si 1.86808 * 119.99682 * 359.97438 * 8 6 5 11 11 H 1.48506 * 109.46838 * 89.99667 * 10 8 6 12 12 H 1.48499 * 109.47284 * 209.99846 * 10 8 6 13 13 H 1.48502 * 109.46869 * 330.00041 * 10 8 6 14 14 C 1.46905 * 110.99461 * 63.21762 * 4 3 2 15 15 C 1.50698 * 109.47052 * 66.04748 * 14 4 3 16 16 C 1.38123 * 120.03785 * 259.99621 * 15 14 4 17 17 C 1.38267 * 120.07833 * 180.02562 * 16 15 14 18 18 C 1.38308 * 120.14505 * 0.02562 * 17 16 15 19 19 C 1.38079 * 120.08075 * 359.97438 * 18 17 16 20 20 C 1.38893 * 120.03884 * 79.99685 * 15 14 4 21 21 N 1.39673 * 120.07307 * 0.02562 * 20 15 14 22 22 C 1.46853 * 110.99862 * 244.16381 * 21 20 15 23 23 C 1.53035 * 109.52229 * 174.15893 * 22 21 20 24 24 C 1.53122 * 109.27484 * 59.18324 * 23 22 21 25 25 C 1.53123 * 109.16119 * 302.34058 * 24 23 22 26 26 C 1.46847 * 110.99926 * 119.95616 * 21 20 15 27 27 H 1.08997 * 109.47302 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47056 * 299.99533 * 1 2 3 29 29 H 1.09001 * 109.47554 * 59.99484 * 1 2 3 30 30 H 1.09001 * 109.46641 * 240.00125 * 2 1 3 31 31 H 1.09002 * 109.46843 * 120.00310 * 2 1 3 32 32 H 1.09001 * 109.46587 * 62.23196 * 3 2 1 33 33 H 1.08997 * 109.47289 * 302.22799 * 3 2 1 34 34 H 1.09006 * 109.47433 * 48.87442 * 5 4 3 35 35 H 1.08994 * 109.47412 * 168.87771 * 5 4 3 36 36 H 0.97004 * 120.00168 * 179.97438 * 9 8 6 37 37 H 1.08996 * 109.47210 * 306.04677 * 14 4 3 38 38 H 1.09003 * 109.46904 * 186.04401 * 14 4 3 39 39 H 1.08001 * 119.96282 * 0.28112 * 16 15 14 40 40 H 1.07997 * 119.92888 * 180.02562 * 17 16 15 41 41 H 1.08003 * 119.95746 * 179.97438 * 18 17 16 42 42 H 1.07994 * 120.04313 * 180.02562 * 19 18 17 43 43 H 1.09000 * 109.46264 * 294.17678 * 22 21 20 44 44 H 1.09001 * 109.46272 * 54.14863 * 22 21 20 45 45 H 1.09000 * 109.50924 * 299.24500 * 23 22 21 46 46 H 1.08993 * 109.53854 * 179.14145 * 23 22 21 47 47 H 1.09006 * 109.52513 * 182.43975 * 24 23 22 48 48 H 1.08995 * 109.58004 * 62.28224 * 24 23 22 49 49 H 1.08992 * 109.50628 * 297.71517 * 25 24 23 50 50 H 1.08998 * 109.53653 * 177.61537 * 25 24 23 51 51 H 1.08990 * 109.46254 * 305.85869 * 26 21 20 52 52 H 1.08997 * 109.46128 * 65.83229 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5080 1.4428 -0.0538 5 6 4.0778 0.7571 1.1137 6 6 3.8734 1.6042 2.3431 7 1 3.3519 2.5471 2.2686 8 6 4.3520 1.1758 3.5631 9 7 4.1732 1.9149 4.6360 10 14 5.2534 -0.4553 3.6921 11 1 6.7066 -0.2361 3.4786 12 1 5.0334 -1.0372 5.0406 13 1 4.7367 -1.3893 2.6597 14 6 3.9890 0.8408 -1.3045 15 6 3.5875 1.7107 -2.4676 16 6 2.4860 1.3782 -3.2319 17 6 2.1172 2.1755 -4.2996 18 6 2.8495 3.3079 -4.6065 19 6 3.9517 3.6462 -3.8467 20 6 4.3245 2.8478 -2.7724 21 7 5.4392 3.1868 -2.0020 22 6 5.2296 4.4628 -1.3061 23 6 6.4045 4.7297 -0.3625 24 6 7.7030 4.7761 -1.1727 25 6 7.8729 3.4538 -1.9258 26 6 6.6554 3.2238 -2.8241 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 1.8932 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 1.7097 1.9445 0.9094 33 1 1.6445 1.9677 -0.8693 34 1 3.5819 -0.2043 1.2483 35 1 5.1443 0.5967 0.9562 36 1 4.5096 1.6132 5.4944 37 1 3.5502 -0.1499 -1.4232 38 1 5.0753 0.7556 -1.2725 39 1 1.9098 0.4966 -2.9927 40 1 1.2553 1.9134 -4.8953 41 1 2.5589 3.9283 -5.4414 42 1 4.5229 4.5308 -4.0865 43 1 5.1607 5.2683 -2.0373 44 1 4.3052 4.4150 -0.7304 45 1 6.4656 3.9317 0.3775 46 1 6.2566 5.6841 0.1428 47 1 8.5475 4.9229 -0.4993 48 1 7.6590 5.5988 -1.8864 49 1 7.9571 2.6358 -1.2105 50 1 8.7739 3.4961 -2.5379 51 1 6.7666 2.2762 -3.3510 52 1 6.5799 4.0352 -3.5480 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001138605080.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:22:12 Heat of formation + Delta-G solvation = 13.153421 kcal Electronic energy + Delta-G solvation = -28426.093360 eV Core-core repulsion = 25003.295772 eV Total energy + Delta-G solvation = -3422.797588 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.28206 -39.30748 -38.33010 -34.77696 -34.56795 -33.74050 -32.41767 -31.69924 -30.16182 -29.34802 -27.40289 -25.54203 -24.99899 -23.92652 -23.56104 -22.95772 -21.94512 -20.55032 -20.41126 -18.83117 -18.02175 -16.90553 -16.66226 -16.55603 -16.22124 -15.84860 -15.71495 -15.50202 -15.30272 -14.99566 -14.61437 -14.50402 -14.39724 -14.32828 -13.91942 -13.88630 -13.40922 -13.34404 -13.05769 -12.84987 -12.80795 -12.69235 -12.50814 -12.31834 -12.17738 -12.11595 -12.06419 -11.90781 -11.69672 -11.57152 -11.36438 -11.32914 -11.29654 -11.17634 -10.71229 -9.68147 -9.40001 -9.17738 -8.71078 -8.22563 -6.22219 0.47926 0.52262 1.34226 1.34540 1.45103 2.36705 2.82827 2.98772 3.11432 3.55075 3.92177 3.96864 4.01396 4.03228 4.08630 4.15264 4.17924 4.26488 4.35161 4.44982 4.47308 4.49260 4.56368 4.57949 4.64378 4.71641 4.73469 4.78782 4.84346 4.87351 4.92948 4.97622 5.01245 5.04790 5.05469 5.13863 5.14786 5.23641 5.26411 5.29034 5.37469 5.39207 5.48231 5.53552 5.57301 5.63788 5.66686 5.77782 6.05905 6.10175 6.22263 6.55590 6.67484 6.79756 6.82999 7.39992 8.94462 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.009859 B = 0.005997 C = 0.004167 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2839.298105 B = 4668.078542 C = 6717.447767 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.157 4.157 3 C 0.073 3.927 4 N -0.518 5.518 5 C 0.176 3.824 6 C -0.493 4.493 7 H 0.033 0.967 8 C 0.010 3.990 9 N -0.950 5.950 10 Si 0.938 3.062 11 H -0.269 1.269 12 H -0.284 1.284 13 H -0.253 1.253 14 C 0.107 3.893 15 C -0.066 4.066 16 C -0.115 4.115 17 C -0.124 4.124 18 C -0.114 4.114 19 C -0.159 4.159 20 C 0.098 3.902 21 N -0.505 5.505 22 C 0.085 3.915 23 C -0.116 4.116 24 C -0.111 4.111 25 C -0.113 4.113 26 C 0.065 3.935 27 H 0.063 0.937 28 H 0.042 0.958 29 H 0.067 0.933 30 H 0.069 0.931 31 H 0.041 0.959 32 H 0.041 0.959 33 H 0.071 0.929 34 H -0.007 1.007 35 H 0.015 0.985 36 H 0.263 0.737 37 H 0.035 0.965 38 H 0.066 0.934 39 H 0.129 0.871 40 H 0.146 0.854 41 H 0.144 0.856 42 H 0.124 0.876 43 H 0.040 0.960 44 H 0.048 0.952 45 H 0.042 0.958 46 H 0.067 0.933 47 H 0.067 0.933 48 H 0.072 0.928 49 H 0.050 0.950 50 H 0.088 0.912 51 H 0.070 0.930 52 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.547 1.124 -21.442 21.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.196 4.196 3 C -0.055 4.055 4 N -0.240 5.240 5 C 0.049 3.951 6 C -0.532 4.532 7 H 0.052 0.948 8 C -0.187 4.187 9 N -0.592 5.592 10 Si 0.763 3.237 11 H -0.194 1.194 12 H -0.209 1.209 13 H -0.177 1.177 14 C -0.020 4.020 15 C -0.067 4.067 16 C -0.134 4.134 17 C -0.142 4.142 18 C -0.133 4.133 19 C -0.179 4.179 20 C 0.004 3.996 21 N -0.227 5.227 22 C -0.042 4.042 23 C -0.154 4.154 24 C -0.149 4.149 25 C -0.151 4.151 26 C -0.062 4.062 27 H 0.082 0.918 28 H 0.061 0.939 29 H 0.086 0.914 30 H 0.087 0.913 31 H 0.060 0.940 32 H 0.060 0.940 33 H 0.090 0.910 34 H 0.011 0.989 35 H 0.033 0.967 36 H 0.072 0.928 37 H 0.053 0.947 38 H 0.085 0.915 39 H 0.147 0.853 40 H 0.164 0.836 41 H 0.162 0.838 42 H 0.142 0.858 43 H 0.058 0.942 44 H 0.066 0.934 45 H 0.061 0.939 46 H 0.085 0.915 47 H 0.085 0.915 48 H 0.091 0.909 49 H 0.069 0.931 50 H 0.106 0.894 51 H 0.088 0.912 52 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 0.855 1.268 -20.862 20.918 hybrid contribution 0.038 -0.685 0.577 0.897 sum 0.894 0.583 -20.285 20.313 Atomic orbital electron populations 1.21607 0.94071 1.01980 1.01828 1.22087 0.97715 0.98670 1.01081 1.21952 0.87683 0.95453 1.00460 1.61978 1.06889 1.54414 1.00686 1.19887 0.93908 0.92411 0.88886 1.21156 1.34932 1.05319 0.91760 0.94849 1.25713 0.97043 1.00617 0.95311 1.70048 1.49003 1.40170 0.99988 0.85848 0.79551 0.80590 0.77741 1.19447 1.20932 1.17698 1.20799 0.99748 0.93631 0.87852 1.19791 0.95506 0.95508 0.95914 1.21187 0.95838 1.00642 0.95705 1.21377 1.00500 0.94968 0.97349 1.21272 0.94745 0.97389 0.99858 1.21757 0.99110 1.00225 0.96796 1.18729 0.93132 0.94745 0.92993 1.59284 1.01493 1.32721 1.29177 1.21812 0.98371 0.88203 0.95796 1.21521 0.95080 1.00932 0.97842 1.21523 0.96691 0.97754 0.98921 1.21571 0.97229 0.97611 0.98687 1.22130 0.89008 1.00884 0.94144 0.91830 0.93851 0.91406 0.91257 0.93998 0.94006 0.91049 0.98927 0.96702 0.92758 0.94707 0.91513 0.85328 0.83600 0.83842 0.85772 0.94165 0.93357 0.93932 0.91475 0.91463 0.90895 0.93078 0.89350 0.91150 0.93772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.72 9.91 71.98 0.71 -3.01 16 2 C -0.16 -5.24 5.29 30.59 0.16 -5.08 16 3 C 0.07 2.82 4.96 86.30 0.43 3.25 16 4 N -0.52 -21.81 4.65 -905.38 -4.21 -26.03 16 5 C 0.18 8.67 3.63 85.56 0.31 8.98 16 6 C -0.49 -29.08 9.14 25.60 0.23 -28.84 16 7 H 0.03 2.22 7.65 -2.91 -0.02 2.19 16 8 C 0.01 0.57 5.47 84.66 0.46 1.04 16 9 N -0.95 -60.63 13.96 21.45 0.30 -60.33 16 10 Si 0.94 45.54 27.44 68.60 1.88 47.43 16 11 H -0.27 -12.67 7.11 99.48 0.71 -11.96 16 12 H -0.28 -13.47 7.11 99.48 0.71 -12.76 16 13 H -0.25 -11.54 6.58 99.48 0.65 -10.89 16 14 C 0.11 3.76 4.53 85.56 0.39 4.15 16 15 C -0.07 -1.99 4.60 -19.74 -0.09 -2.08 16 16 C -0.11 -2.83 8.64 22.25 0.19 -2.64 16 17 C -0.12 -2.51 10.04 22.29 0.22 -2.29 16 18 C -0.11 -2.29 10.04 22.25 0.22 -2.07 16 19 C -0.16 -3.80 8.70 22.40 0.19 -3.61 16 20 C 0.10 2.87 4.66 38.22 0.18 3.04 16 21 N -0.51 -15.36 3.77 -695.39 -2.62 -17.98 16 22 C 0.08 2.65 5.17 86.32 0.45 3.10 16 23 C -0.12 -3.58 6.09 30.65 0.19 -3.40 16 24 C -0.11 -2.63 6.00 30.68 0.18 -2.45 16 25 C -0.11 -2.64 6.09 30.65 0.19 -2.45 16 26 C 0.06 1.58 5.11 86.33 0.44 2.02 16 27 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 28 H 0.04 1.27 8.14 -2.39 -0.02 1.25 16 29 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 30 H 0.07 2.07 5.99 -2.39 -0.01 2.06 16 31 H 0.04 1.64 6.31 -2.39 -0.02 1.63 16 32 H 0.04 1.92 7.17 -2.39 -0.02 1.90 16 33 H 0.07 2.52 6.46 -2.39 -0.02 2.50 16 34 H -0.01 -0.33 5.01 -2.38 -0.01 -0.34 16 35 H 0.01 0.75 7.19 -2.39 -0.02 0.73 16 36 H 0.26 15.75 8.31 -92.71 -0.77 14.98 16 37 H 0.03 1.15 5.92 -2.39 -0.01 1.13 16 38 H 0.07 2.52 7.52 -2.39 -0.02 2.50 16 39 H 0.13 2.86 7.78 -2.91 -0.02 2.84 16 40 H 0.15 2.09 8.06 -2.91 -0.02 2.06 16 41 H 0.14 2.04 8.06 -2.91 -0.02 2.02 16 42 H 0.12 2.63 7.13 -2.91 -0.02 2.61 16 43 H 0.04 1.09 7.55 -2.39 -0.02 1.07 16 44 H 0.05 1.85 8.11 -2.39 -0.02 1.83 16 45 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 46 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 47 H 0.07 1.51 8.14 -2.38 -0.02 1.49 16 48 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 49 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 50 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 51 H 0.07 1.69 8.11 -2.39 -0.02 1.67 16 52 H 0.04 0.94 7.33 -2.39 -0.02 0.93 16 Total: -1.00 -67.99 391.63 1.23 -66.76 By element: Atomic # 1 Polarization: 21.66 SS G_CDS: 0.81 Total: 22.47 kcal Atomic # 6 Polarization: -37.39 SS G_CDS: 5.07 Total: -32.32 kcal Atomic # 7 Polarization: -97.80 SS G_CDS: -6.53 Total: -104.34 kcal Atomic # 14 Polarization: 45.54 SS G_CDS: 1.88 Total: 47.43 kcal Total: -67.99 1.23 -66.76 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001138605080.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.916 kcal (2) G-P(sol) polarization free energy of solvation -67.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.763 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds