Wall clock time and date at job start Tue Mar 31 2020 11:07:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53003 * 109.46338 * 2 1 4 4 C 1.53010 * 109.46703 * 184.75139 * 3 2 1 5 5 N 1.46496 * 109.47023 * 183.88502 * 4 3 2 6 6 C 1.36939 * 119.99577 * 96.85538 * 5 4 3 7 7 H 1.08007 * 120.00042 * 162.42092 * 6 5 4 8 8 C 1.38807 * 120.00349 * 342.14783 * 6 5 4 9 9 N 1.31620 * 119.99791 * 355.27038 * 8 6 5 10 10 Si 1.86808 * 120.00329 * 175.27478 * 8 6 5 11 11 H 1.48494 * 109.46840 * 59.99885 * 10 8 6 12 12 H 1.48494 * 109.46810 * 180.02562 * 10 8 6 13 13 H 1.48498 * 109.46776 * 299.99625 * 10 8 6 14 14 C 1.46498 * 120.00213 * 276.85589 * 5 4 3 15 15 C 1.50702 * 109.46991 * 277.28483 * 14 5 4 16 16 C 1.38128 * 120.03205 * 98.88885 * 15 14 5 17 17 C 1.38262 * 120.06977 * 180.02562 * 16 15 14 18 18 C 1.38307 * 120.15364 * 359.97438 * 17 16 15 19 19 C 1.38079 * 120.07338 * 359.97438 * 18 17 16 20 20 C 1.38889 * 120.04058 * 278.60970 * 15 14 5 21 21 N 1.39671 * 120.07029 * 0.02759 * 20 15 14 22 22 C 1.46846 * 110.99623 * 246.29232 * 21 20 15 23 23 C 1.53042 * 109.52130 * 174.16175 * 22 21 20 24 24 C 1.53125 * 109.27772 * 59.18431 * 23 22 21 25 25 C 1.53117 * 109.15950 * 302.34258 * 24 23 22 26 26 C 1.46850 * 110.99977 * 122.09102 * 21 20 15 27 27 H 1.09001 * 109.46411 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47241 * 299.99806 * 1 2 3 29 29 H 1.08993 * 109.47508 * 60.00333 * 1 2 3 30 30 H 1.08991 * 109.47030 * 240.00019 * 2 1 3 31 31 H 1.08996 * 109.47071 * 119.99427 * 2 1 3 32 32 H 1.08995 * 109.47403 * 64.75638 * 3 2 1 33 33 H 1.08998 * 109.47424 * 304.74892 * 3 2 1 34 34 H 1.08996 * 109.46842 * 63.88627 * 4 3 2 35 35 H 1.09001 * 109.47026 * 303.88774 * 4 3 2 36 36 H 0.97007 * 119.99851 * 179.97438 * 9 8 6 37 37 H 1.09001 * 109.47247 * 37.28734 * 14 5 4 38 38 H 1.09003 * 109.47019 * 157.29042 * 14 5 4 39 39 H 1.08000 * 119.96496 * 359.97438 * 16 15 14 40 40 H 1.08007 * 119.92284 * 179.97438 * 17 16 15 41 41 H 1.07998 * 119.96724 * 180.02562 * 18 17 16 42 42 H 1.08002 * 120.03899 * 180.02562 * 19 18 17 43 43 H 1.08997 * 109.46833 * 294.18149 * 22 21 20 44 44 H 1.09001 * 109.46260 * 54.15280 * 22 21 20 45 45 H 1.08997 * 109.50551 * 299.23838 * 23 22 21 46 46 H 1.09005 * 109.53508 * 179.14179 * 23 22 21 47 47 H 1.08993 * 109.51970 * 182.43677 * 24 23 22 48 48 H 1.08998 * 109.57113 * 62.27975 * 24 23 22 49 49 H 1.08998 * 109.50392 * 297.71384 * 25 24 23 50 50 H 1.09001 * 109.53435 * 177.61434 * 25 24 23 51 51 H 1.09001 * 109.45886 * 305.85033 * 26 21 20 52 52 H 1.08998 * 109.46532 * 65.82547 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5653 1.4443 -0.1195 5 7 4.0608 2.8198 -0.0263 6 6 4.5168 3.3036 1.1708 7 1 5.1339 4.1897 1.1955 8 6 4.1813 2.6585 2.3533 9 7 3.3501 1.6382 2.3333 10 14 4.9093 3.2386 3.9729 11 1 4.5206 4.6517 4.2123 12 1 4.3968 2.3896 5.0782 13 1 6.3896 3.1352 3.9154 14 6 4.0685 3.6777 -1.2138 15 6 5.3005 3.3906 -2.0329 16 6 5.2210 2.5593 -3.1331 17 6 6.3509 2.2950 -3.8848 18 6 7.5640 2.8620 -3.5385 19 6 7.6503 3.6948 -2.4405 20 6 6.5159 3.9663 -1.6857 21 7 6.5986 4.8115 -0.5769 22 6 6.9104 6.1870 -0.9859 23 6 6.8497 7.1093 0.2339 24 6 7.8567 6.6281 1.2822 25 6 7.5392 5.1774 1.6552 26 6 7.5799 4.3110 0.3943 27 1 -0.3632 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5137 -0.8899 30 1 1.8933 -0.5138 -0.8899 31 1 1.8934 -0.5137 0.8900 32 1 1.7477 1.9312 0.9295 33 1 1.6087 1.9804 -0.8444 34 1 3.8549 1.0181 -1.0799 35 1 3.9935 0.8484 0.6865 36 1 3.1159 1.1871 3.1596 37 1 3.1796 3.4778 -1.8122 38 1 4.0720 4.7235 -0.9065 39 1 4.2754 2.1147 -3.4060 40 1 6.2861 1.6443 -4.7444 41 1 8.4446 2.6538 -4.1281 42 1 8.5977 4.1375 -2.1709 43 1 7.9111 6.2199 -1.4167 44 1 6.1844 6.5185 -1.7283 45 1 5.8454 7.0876 0.6570 46 1 7.0960 8.1278 -0.0667 47 1 7.7863 7.2563 2.1701 48 1 8.8654 6.6867 0.8735 49 1 6.5458 5.1252 2.1007 50 1 8.2780 4.8147 2.3699 51 1 7.3402 3.2799 0.6542 52 1 8.5775 4.3528 -0.0429 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001138608329.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:07:59 Heat of formation + Delta-G solvation = 47.551875 kcal Electronic energy + Delta-G solvation = -28718.109890 eV Core-core repulsion = 25296.803931 eV Total energy + Delta-G solvation = -3421.305959 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -39.88175 -37.54298 -36.03340 -33.49090 -33.23846 -31.86124 -30.50189 -29.92554 -28.77040 -27.72393 -25.31502 -24.02132 -23.46412 -22.69674 -21.63740 -21.11331 -20.16864 -19.37695 -19.23529 -16.82161 -16.44945 -15.39681 -15.06892 -14.90962 -14.43491 -14.32260 -14.04008 -13.88169 -13.41188 -13.33238 -13.19285 -13.10040 -12.90222 -12.65378 -12.53976 -12.07400 -11.76517 -11.64953 -11.49810 -11.15339 -11.09062 -10.97319 -10.86232 -10.70353 -10.56991 -10.34536 -10.22920 -10.12695 -10.06017 -9.99714 -9.86733 -9.63629 -9.39479 -9.15714 -8.35079 -8.17615 -8.06979 -7.77997 -6.54707 -5.45130 -2.90883 1.78157 1.90490 3.46400 3.51065 3.53230 4.19936 4.26296 4.67257 5.08535 5.15392 5.21942 5.31065 5.34720 5.47468 5.56152 5.63454 5.69196 5.73997 5.79925 5.84049 5.88288 5.89667 5.93225 6.03839 6.07917 6.10041 6.11690 6.18124 6.24766 6.28805 6.41748 6.46827 6.54102 6.54951 6.62184 6.67056 6.76400 6.81170 6.84097 6.91557 6.92787 7.02047 7.09980 7.20979 7.37727 7.42119 7.48579 7.50129 8.01770 8.04838 8.07899 8.30296 8.69031 9.52330 10.10803 10.56693 11.53898 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.010145 B = 0.006572 C = 0.004416 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2759.370540 B = 4259.354279 C = 6339.080301 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.112 4.112 3 C -0.110 4.110 4 C 0.170 3.830 5 N -0.583 5.583 6 C -0.218 4.218 7 H 0.096 0.904 8 C -0.017 4.017 9 N -0.913 5.913 10 Si 0.893 3.107 11 H -0.288 1.288 12 H -0.297 1.297 13 H -0.286 1.286 14 C 0.192 3.808 15 C -0.057 4.057 16 C -0.113 4.113 17 C -0.129 4.129 18 C -0.130 4.130 19 C -0.156 4.156 20 C 0.107 3.893 21 N -0.480 5.480 22 C 0.063 3.937 23 C -0.116 4.116 24 C -0.119 4.119 25 C -0.121 4.121 26 C 0.073 3.927 27 H 0.037 0.963 28 H 0.050 0.950 29 H 0.041 0.959 30 H 0.035 0.965 31 H 0.061 0.939 32 H 0.092 0.908 33 H 0.009 0.991 34 H -0.010 1.010 35 H 0.100 0.900 36 H 0.245 0.755 37 H 0.032 0.968 38 H 0.065 0.935 39 H 0.117 0.883 40 H 0.112 0.888 41 H 0.109 0.891 42 H 0.108 0.892 43 H 0.026 0.974 44 H 0.070 0.930 45 H 0.075 0.925 46 H 0.060 0.940 47 H 0.059 0.941 48 H 0.052 0.948 49 H 0.082 0.918 50 H 0.060 0.940 51 H 0.086 0.914 52 H 0.021 0.979 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.810 4.877 -8.152 11.135 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.150 4.150 3 C -0.149 4.149 4 C 0.045 3.955 5 N -0.302 5.302 6 C -0.348 4.348 7 H 0.113 0.887 8 C -0.212 4.212 9 N -0.563 5.563 10 Si 0.725 3.275 11 H -0.215 1.215 12 H -0.223 1.223 13 H -0.213 1.213 14 C 0.065 3.935 15 C -0.061 4.061 16 C -0.133 4.133 17 C -0.147 4.147 18 C -0.149 4.149 19 C -0.176 4.176 20 C 0.013 3.987 21 N -0.201 5.201 22 C -0.063 4.063 23 C -0.154 4.154 24 C -0.156 4.156 25 C -0.159 4.159 26 C -0.053 4.053 27 H 0.056 0.944 28 H 0.069 0.931 29 H 0.060 0.940 30 H 0.054 0.946 31 H 0.080 0.920 32 H 0.110 0.890 33 H 0.028 0.972 34 H 0.008 0.992 35 H 0.118 0.882 36 H 0.056 0.944 37 H 0.050 0.950 38 H 0.084 0.916 39 H 0.135 0.865 40 H 0.130 0.870 41 H 0.127 0.873 42 H 0.126 0.874 43 H 0.044 0.956 44 H 0.089 0.911 45 H 0.094 0.906 46 H 0.078 0.922 47 H 0.077 0.923 48 H 0.071 0.929 49 H 0.101 0.899 50 H 0.079 0.921 51 H 0.105 0.895 52 H 0.039 0.961 Dipole moment (debyes) X Y Z Total from point charges 5.292 4.823 -7.701 10.515 hybrid contribution 1.240 0.033 0.479 1.330 sum 6.532 4.855 -7.222 10.881 Atomic orbital electron populations 1.21749 0.97901 0.99662 1.00897 1.21367 0.93715 0.99653 1.00278 1.22107 0.98550 0.93401 1.00852 1.20922 0.92098 0.85739 0.96700 1.44024 1.72542 1.09317 1.04306 1.19840 1.22604 1.09648 0.82695 0.88657 1.24880 0.99490 0.99666 0.97117 1.70064 1.37407 1.24092 1.24716 0.86509 0.78693 0.77729 0.84599 1.21488 1.22335 1.21325 1.19600 0.89983 0.95925 0.88006 1.21153 0.97594 0.93820 0.93543 1.21023 0.98200 0.98581 0.95478 1.21026 0.93125 1.00500 1.00023 1.20780 0.97331 0.99090 0.97717 1.21558 0.98375 1.00662 0.97024 1.18551 0.92559 0.96194 0.91445 1.59393 1.49266 1.00381 1.11015 1.22081 0.98660 0.88626 0.96982 1.21578 1.00800 0.97342 0.95633 1.21568 0.98370 0.97017 0.98667 1.21681 1.03128 0.94026 0.97019 1.22014 0.91297 1.00262 0.91755 0.94390 0.93133 0.93966 0.94601 0.92010 0.88952 0.97242 0.99163 0.88200 0.94448 0.94956 0.91629 0.86535 0.87031 0.87261 0.87407 0.95568 0.91124 0.90596 0.92153 0.92254 0.92923 0.89923 0.92143 0.89512 0.96118 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.44 9.91 37.16 0.37 -2.07 16 2 C -0.11 -2.19 5.93 -26.73 -0.16 -2.34 16 3 C -0.11 -2.46 4.88 -26.72 -0.13 -2.59 16 4 C 0.17 4.05 4.87 -4.04 -0.02 4.03 16 5 N -0.58 -13.80 2.52 -174.61 -0.44 -14.24 16 6 C -0.22 -5.51 9.21 -15.06 -0.14 -5.65 16 7 H 0.10 2.32 3.90 -52.48 -0.20 2.12 16 8 C -0.02 -0.46 5.26 -17.43 -0.09 -0.55 16 9 N -0.91 -24.77 7.96 55.49 0.44 -24.33 16 10 Si 0.89 21.40 28.72 -169.99 -4.88 16.52 16 11 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 12 H -0.30 -7.39 7.11 56.52 0.40 -6.99 16 13 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 14 C 0.19 3.96 5.48 -5.19 -0.03 3.93 16 15 C -0.06 -1.06 5.46 -104.42 -0.57 -1.63 16 16 C -0.11 -1.91 9.66 -39.61 -0.38 -2.29 16 17 C -0.13 -1.92 10.04 -39.55 -0.40 -2.32 16 18 C -0.13 -1.91 10.04 -39.61 -0.40 -2.30 16 19 C -0.16 -2.47 8.72 -39.38 -0.34 -2.81 16 20 C 0.11 1.89 4.66 -83.79 -0.39 1.49 16 21 N -0.48 -8.22 2.36 -171.14 -0.40 -8.62 16 22 C 0.06 0.91 5.20 -3.83 -0.02 0.89 16 23 C -0.12 -1.54 6.09 -26.65 -0.16 -1.70 16 24 C -0.12 -1.58 6.00 -26.61 -0.16 -1.74 16 25 C -0.12 -1.96 5.97 -26.65 -0.16 -2.12 16 26 C 0.07 1.26 4.21 -3.83 -0.02 1.24 16 27 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 29 H 0.04 0.67 8.14 -51.93 -0.42 0.24 16 30 H 0.04 0.66 8.14 -51.93 -0.42 0.23 16 31 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 32 H 0.09 2.39 6.45 -51.93 -0.33 2.05 16 33 H 0.01 0.20 8.05 -51.93 -0.42 -0.22 16 34 H -0.01 -0.23 8.12 -51.93 -0.42 -0.65 16 35 H 0.10 2.69 5.80 -51.93 -0.30 2.39 16 36 H 0.24 6.69 8.31 -40.82 -0.34 6.35 16 37 H 0.03 0.65 7.91 -51.93 -0.41 0.24 16 38 H 0.07 1.38 7.59 -51.93 -0.39 0.99 16 39 H 0.12 1.85 8.04 -52.49 -0.42 1.43 16 40 H 0.11 1.38 8.06 -52.48 -0.42 0.96 16 41 H 0.11 1.33 8.06 -52.49 -0.42 0.90 16 42 H 0.11 1.57 7.13 -52.49 -0.37 1.19 16 43 H 0.03 0.36 7.69 -51.93 -0.40 -0.04 16 44 H 0.07 1.01 8.11 -51.93 -0.42 0.59 16 45 H 0.08 1.13 8.14 -51.93 -0.42 0.70 16 46 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 47 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 48 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 49 H 0.08 1.57 5.69 -51.93 -0.30 1.28 16 50 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 51 H 0.09 1.76 7.98 -51.93 -0.41 1.35 16 52 H 0.02 0.33 7.22 -51.93 -0.37 -0.05 16 LS Contribution 390.02 15.07 5.88 5.88 Total: -1.00 -26.33 390.02 -12.00 -38.33 By element: Atomic # 1 Polarization: 14.40 SS G_CDS: -9.40 Total: 5.00 kcal Atomic # 6 Polarization: -15.34 SS G_CDS: -3.20 Total: -18.53 kcal Atomic # 7 Polarization: -46.79 SS G_CDS: -0.40 Total: -47.20 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -4.88 Total: 16.52 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -26.33 -12.00 -38.33 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001138608329.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.881 kcal (2) G-P(sol) polarization free energy of solvation -26.330 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.551 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.999 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.329 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds