Wall clock time and date at job start Tue Mar 31 2020 11:07:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53003 * 109.46338 * 2 1 4 4 C 1.53010 * 109.46703 * 184.75139 * 3 2 1 5 5 N 1.46496 * 109.47023 * 183.88502 * 4 3 2 6 6 C 1.36939 * 119.99577 * 96.85538 * 5 4 3 7 7 H 1.08007 * 120.00042 * 162.42092 * 6 5 4 8 8 C 1.38807 * 120.00349 * 342.14783 * 6 5 4 9 9 N 1.31620 * 119.99791 * 355.27038 * 8 6 5 10 10 Si 1.86808 * 120.00329 * 175.27478 * 8 6 5 11 11 H 1.48494 * 109.46840 * 59.99885 * 10 8 6 12 12 H 1.48494 * 109.46810 * 180.02562 * 10 8 6 13 13 H 1.48498 * 109.46776 * 299.99625 * 10 8 6 14 14 C 1.46498 * 120.00213 * 276.85589 * 5 4 3 15 15 C 1.50702 * 109.46991 * 277.28483 * 14 5 4 16 16 C 1.38128 * 120.03205 * 98.88885 * 15 14 5 17 17 C 1.38262 * 120.06977 * 180.02562 * 16 15 14 18 18 C 1.38307 * 120.15364 * 359.97438 * 17 16 15 19 19 C 1.38079 * 120.07338 * 359.97438 * 18 17 16 20 20 C 1.38889 * 120.04058 * 278.60970 * 15 14 5 21 21 N 1.39671 * 120.07029 * 0.02759 * 20 15 14 22 22 C 1.46846 * 110.99623 * 246.29232 * 21 20 15 23 23 C 1.53042 * 109.52130 * 174.16175 * 22 21 20 24 24 C 1.53125 * 109.27772 * 59.18431 * 23 22 21 25 25 C 1.53117 * 109.15950 * 302.34258 * 24 23 22 26 26 C 1.46850 * 110.99977 * 122.09102 * 21 20 15 27 27 H 1.09001 * 109.46411 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47241 * 299.99806 * 1 2 3 29 29 H 1.08993 * 109.47508 * 60.00333 * 1 2 3 30 30 H 1.08991 * 109.47030 * 240.00019 * 2 1 3 31 31 H 1.08996 * 109.47071 * 119.99427 * 2 1 3 32 32 H 1.08995 * 109.47403 * 64.75638 * 3 2 1 33 33 H 1.08998 * 109.47424 * 304.74892 * 3 2 1 34 34 H 1.08996 * 109.46842 * 63.88627 * 4 3 2 35 35 H 1.09001 * 109.47026 * 303.88774 * 4 3 2 36 36 H 0.97007 * 119.99851 * 179.97438 * 9 8 6 37 37 H 1.09001 * 109.47247 * 37.28734 * 14 5 4 38 38 H 1.09003 * 109.47019 * 157.29042 * 14 5 4 39 39 H 1.08000 * 119.96496 * 359.97438 * 16 15 14 40 40 H 1.08007 * 119.92284 * 179.97438 * 17 16 15 41 41 H 1.07998 * 119.96724 * 180.02562 * 18 17 16 42 42 H 1.08002 * 120.03899 * 180.02562 * 19 18 17 43 43 H 1.08997 * 109.46833 * 294.18149 * 22 21 20 44 44 H 1.09001 * 109.46260 * 54.15280 * 22 21 20 45 45 H 1.08997 * 109.50551 * 299.23838 * 23 22 21 46 46 H 1.09005 * 109.53508 * 179.14179 * 23 22 21 47 47 H 1.08993 * 109.51970 * 182.43677 * 24 23 22 48 48 H 1.08998 * 109.57113 * 62.27975 * 24 23 22 49 49 H 1.08998 * 109.50392 * 297.71384 * 25 24 23 50 50 H 1.09001 * 109.53435 * 177.61434 * 25 24 23 51 51 H 1.09001 * 109.45886 * 305.85033 * 26 21 20 52 52 H 1.08998 * 109.46532 * 65.82547 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5653 1.4443 -0.1195 5 7 4.0608 2.8198 -0.0263 6 6 4.5168 3.3036 1.1708 7 1 5.1339 4.1897 1.1955 8 6 4.1813 2.6585 2.3533 9 7 3.3501 1.6382 2.3333 10 14 4.9093 3.2386 3.9729 11 1 4.5206 4.6517 4.2123 12 1 4.3968 2.3896 5.0782 13 1 6.3896 3.1352 3.9154 14 6 4.0685 3.6777 -1.2138 15 6 5.3005 3.3906 -2.0329 16 6 5.2210 2.5593 -3.1331 17 6 6.3509 2.2950 -3.8848 18 6 7.5640 2.8620 -3.5385 19 6 7.6503 3.6948 -2.4405 20 6 6.5159 3.9663 -1.6857 21 7 6.5986 4.8115 -0.5769 22 6 6.9104 6.1870 -0.9859 23 6 6.8497 7.1093 0.2339 24 6 7.8567 6.6281 1.2822 25 6 7.5392 5.1774 1.6552 26 6 7.5799 4.3110 0.3943 27 1 -0.3632 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5137 -0.8899 30 1 1.8933 -0.5138 -0.8899 31 1 1.8934 -0.5137 0.8900 32 1 1.7477 1.9312 0.9295 33 1 1.6087 1.9804 -0.8444 34 1 3.8549 1.0181 -1.0799 35 1 3.9935 0.8484 0.6865 36 1 3.1159 1.1871 3.1596 37 1 3.1796 3.4778 -1.8122 38 1 4.0720 4.7235 -0.9065 39 1 4.2754 2.1147 -3.4060 40 1 6.2861 1.6443 -4.7444 41 1 8.4446 2.6538 -4.1281 42 1 8.5977 4.1375 -2.1709 43 1 7.9111 6.2199 -1.4167 44 1 6.1844 6.5185 -1.7283 45 1 5.8454 7.0876 0.6570 46 1 7.0960 8.1278 -0.0667 47 1 7.7863 7.2563 2.1701 48 1 8.8654 6.6867 0.8735 49 1 6.5458 5.1252 2.1007 50 1 8.2780 4.8147 2.3699 51 1 7.3402 3.2799 0.6542 52 1 8.5775 4.3528 -0.0429 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001138608329.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:07:58 Heat of formation + Delta-G solvation = 38.502158 kcal Electronic energy + Delta-G solvation = -28718.502315 eV Core-core repulsion = 25296.803931 eV Total energy + Delta-G solvation = -3421.698385 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.16381 -38.80451 -37.81553 -35.06807 -34.49180 -33.58295 -31.74059 -31.53428 -30.06601 -29.38151 -26.99899 -25.31890 -25.11763 -23.91786 -23.02672 -22.62086 -21.71282 -21.05999 -20.44784 -18.46862 -17.96432 -17.00861 -16.50019 -16.25297 -15.84637 -15.79797 -15.51470 -15.18887 -15.07547 -14.92923 -14.61701 -14.39728 -14.29509 -13.90115 -13.87587 -13.47982 -13.27362 -13.06432 -13.00998 -12.82459 -12.74726 -12.50817 -12.34871 -12.18782 -12.07928 -11.88135 -11.75860 -11.67156 -11.61287 -11.45268 -11.31395 -11.21673 -11.17234 -11.04485 -10.13564 -9.61334 -9.39398 -9.05167 -8.46338 -7.47471 -4.92251 0.53601 0.62486 1.50670 1.51223 1.55461 2.65781 2.94624 3.03245 3.59457 3.92965 3.98211 4.02319 4.05791 4.11049 4.19395 4.31030 4.35396 4.39089 4.46852 4.51316 4.55438 4.61078 4.62990 4.63926 4.75565 4.83866 4.87019 4.91551 4.96289 4.99322 5.04773 5.12130 5.14755 5.16539 5.17659 5.26898 5.29689 5.31486 5.37809 5.39367 5.51300 5.61682 5.64062 5.67303 5.74416 5.86606 6.02951 6.11384 6.14731 6.26910 6.36168 6.69720 6.74337 7.49841 8.18003 8.59376 9.49203 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.010145 B = 0.006572 C = 0.004416 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2759.370540 B = 4259.354279 C = 6339.080301 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.106 4.106 3 C -0.096 4.096 4 C 0.180 3.820 5 N -0.596 5.596 6 C -0.206 4.206 7 H 0.102 0.898 8 C -0.069 4.069 9 N -0.929 5.929 10 Si 0.938 3.062 11 H -0.287 1.287 12 H -0.311 1.311 13 H -0.280 1.280 14 C 0.200 3.800 15 C -0.085 4.085 16 C -0.122 4.122 17 C -0.127 4.127 18 C -0.122 4.122 19 C -0.160 4.160 20 C 0.095 3.905 21 N -0.499 5.499 22 C 0.065 3.935 23 C -0.112 4.112 24 C -0.111 4.111 25 C -0.121 4.121 26 C 0.082 3.918 27 H 0.062 0.938 28 H 0.039 0.961 29 H 0.054 0.946 30 H 0.050 0.950 31 H 0.041 0.959 32 H 0.056 0.944 33 H 0.014 0.986 34 H -0.003 1.003 35 H 0.067 0.933 36 H 0.232 0.768 37 H 0.034 0.966 38 H 0.053 0.947 39 H 0.120 0.880 40 H 0.142 0.858 41 H 0.142 0.858 42 H 0.123 0.877 43 H 0.041 0.959 44 H 0.068 0.932 45 H 0.052 0.948 46 H 0.089 0.911 47 H 0.070 0.930 48 H 0.073 0.927 49 H 0.048 0.952 50 H 0.066 0.934 51 H 0.045 0.955 52 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.492 5.602 -10.360 13.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.144 4.144 3 C -0.136 4.136 4 C 0.054 3.946 5 N -0.316 5.316 6 C -0.337 4.337 7 H 0.119 0.881 8 C -0.260 4.260 9 N -0.581 5.581 10 Si 0.770 3.230 11 H -0.214 1.214 12 H -0.238 1.238 13 H -0.206 1.206 14 C 0.074 3.926 15 C -0.089 4.089 16 C -0.141 4.141 17 C -0.145 4.145 18 C -0.141 4.141 19 C -0.181 4.181 20 C 0.000 4.000 21 N -0.221 5.221 22 C -0.061 4.061 23 C -0.150 4.150 24 C -0.149 4.149 25 C -0.159 4.159 26 C -0.045 4.045 27 H 0.081 0.919 28 H 0.058 0.942 29 H 0.073 0.927 30 H 0.069 0.931 31 H 0.060 0.940 32 H 0.075 0.925 33 H 0.032 0.968 34 H 0.015 0.985 35 H 0.085 0.915 36 H 0.042 0.958 37 H 0.052 0.948 38 H 0.071 0.929 39 H 0.138 0.862 40 H 0.160 0.840 41 H 0.160 0.840 42 H 0.141 0.859 43 H 0.060 0.940 44 H 0.086 0.914 45 H 0.071 0.929 46 H 0.108 0.892 47 H 0.089 0.911 48 H 0.091 0.909 49 H 0.067 0.933 50 H 0.084 0.916 51 H 0.064 0.936 52 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 6.990 5.575 -9.941 13.370 hybrid contribution 0.772 -0.167 1.039 1.305 sum 7.761 5.408 -8.901 12.989 Atomic orbital electron populations 1.21672 0.95543 1.01323 1.00966 1.21276 0.95783 0.97409 0.99964 1.21871 0.97647 0.95110 0.98941 1.20704 0.92778 0.85569 0.95501 1.44181 1.72767 1.09634 1.04990 1.20090 1.21239 1.09068 0.83263 0.88090 1.25404 1.00770 1.00606 0.99257 1.70267 1.38757 1.25051 1.24004 0.85763 0.78396 0.76914 0.81887 1.21382 1.23825 1.20639 1.19514 0.91391 0.94581 0.87107 1.20935 0.96978 0.96068 0.94883 1.21160 0.99405 0.98266 0.95307 1.21352 0.92400 1.00350 1.00372 1.21198 0.98372 0.97460 0.97067 1.21736 0.98229 1.00943 0.97143 1.18697 0.92917 0.96500 0.91844 1.59311 1.49811 1.01631 1.11316 1.22120 0.99322 0.87175 0.97453 1.21572 0.99638 0.98688 0.95099 1.21531 0.99317 0.94761 0.99266 1.21659 1.01357 0.96299 0.96597 1.21831 0.92098 0.98113 0.92408 0.91938 0.94228 0.92719 0.93123 0.94023 0.92546 0.96776 0.98476 0.91525 0.95782 0.94824 0.92871 0.86182 0.84001 0.83987 0.85897 0.94038 0.91353 0.92870 0.89231 0.91116 0.90855 0.93302 0.91560 0.93633 0.94297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.50 9.91 71.98 0.71 -3.78 16 2 C -0.11 -4.16 5.93 30.60 0.18 -3.97 16 3 C -0.10 -4.42 4.88 30.60 0.15 -4.27 16 4 C 0.18 8.81 4.87 86.38 0.42 9.23 16 5 N -0.60 -29.18 2.52 -706.33 -1.78 -30.96 16 6 C -0.21 -10.81 9.21 84.03 0.77 -10.03 16 7 H 0.10 5.12 3.90 -2.91 -0.01 5.11 16 8 C -0.07 -3.78 5.26 84.86 0.45 -3.34 16 9 N -0.93 -52.95 7.96 21.65 0.17 -52.78 16 10 Si 0.94 45.81 28.72 68.60 1.97 47.78 16 11 H -0.29 -13.78 7.11 99.48 0.71 -13.08 16 12 H -0.31 -15.77 7.11 99.48 0.71 -15.06 16 13 H -0.28 -13.16 7.11 99.48 0.71 -12.46 16 14 C 0.20 8.43 5.48 85.63 0.47 8.90 16 15 C -0.09 -3.15 5.46 -19.73 -0.11 -3.26 16 16 C -0.12 -3.95 9.66 22.25 0.22 -3.74 16 17 C -0.13 -3.40 10.04 22.29 0.22 -3.17 16 18 C -0.12 -3.14 10.04 22.25 0.22 -2.92 16 19 C -0.16 -4.67 8.72 22.40 0.20 -4.48 16 20 C 0.09 3.26 4.66 38.21 0.18 3.44 16 21 N -0.50 -16.92 2.36 -695.38 -1.64 -18.56 16 22 C 0.07 1.78 5.20 86.33 0.45 2.23 16 23 C -0.11 -2.78 6.09 30.65 0.19 -2.59 16 24 C -0.11 -2.72 6.00 30.68 0.18 -2.54 16 25 C -0.12 -3.88 5.97 30.65 0.18 -3.70 16 26 C 0.08 2.79 4.21 86.33 0.36 3.16 16 27 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 28 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 29 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 30 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 31 H 0.04 1.78 8.14 -2.39 -0.02 1.76 16 32 H 0.06 3.03 6.45 -2.39 -0.02 3.02 16 33 H 0.01 0.60 8.05 -2.39 -0.02 0.58 16 34 H 0.00 -0.13 8.12 -2.39 -0.02 -0.15 16 35 H 0.07 3.76 5.80 -2.39 -0.01 3.74 16 36 H 0.23 13.38 8.31 -92.70 -0.77 12.61 16 37 H 0.03 1.37 7.91 -2.39 -0.02 1.35 16 38 H 0.05 2.32 7.59 -2.39 -0.02 2.30 16 39 H 0.12 3.69 8.04 -2.91 -0.02 3.67 16 40 H 0.14 2.92 8.06 -2.91 -0.02 2.90 16 41 H 0.14 2.74 8.06 -2.91 -0.02 2.71 16 42 H 0.12 3.16 7.13 -2.91 -0.02 3.14 16 43 H 0.04 1.01 7.69 -2.39 -0.02 0.99 16 44 H 0.07 1.87 8.11 -2.39 -0.02 1.85 16 45 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 46 H 0.09 1.71 8.14 -2.38 -0.02 1.69 16 47 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 48 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 49 H 0.05 1.89 5.69 -2.39 -0.01 1.88 16 50 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 51 H 0.05 1.90 7.98 -2.39 -0.02 1.88 16 52 H 0.04 1.16 7.22 -2.39 -0.02 1.14 16 Total: -1.00 -59.75 390.02 5.03 -54.72 By element: Atomic # 1 Polarization: 23.77 SS G_CDS: 0.86 Total: 24.64 kcal Atomic # 6 Polarization: -30.28 SS G_CDS: 5.45 Total: -24.83 kcal Atomic # 7 Polarization: -99.05 SS G_CDS: -3.25 Total: -102.30 kcal Atomic # 14 Polarization: 45.81 SS G_CDS: 1.97 Total: 47.78 kcal Total: -59.75 5.03 -54.72 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001138608329.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.221 kcal (2) G-P(sol) polarization free energy of solvation -59.750 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.719 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds