Wall clock time and date at job start Tue Mar 31 2020 11:09:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52990 * 109.47277 * 2 1 4 4 C 1.53001 * 109.47277 * 180.02562 * 3 2 1 5 5 N 1.46903 * 109.47193 * 180.84447 * 4 3 2 6 6 C 1.46904 * 111.00023 * 72.47120 * 5 4 3 7 7 C 1.50708 * 109.46975 * 60.38040 * 6 5 4 8 8 H 1.08001 * 119.99962 * 3.60394 * 7 6 5 9 9 C 1.37880 * 120.00051 * 183.60049 * 7 6 5 10 10 N 1.31520 * 119.99481 * 0.02562 * 9 7 6 11 11 Si 1.86788 * 120.00044 * 180.02562 * 9 7 6 12 12 H 1.48506 * 109.47343 * 0.02562 * 11 9 7 13 13 H 1.48503 * 109.47233 * 120.00094 * 11 9 7 14 14 H 1.48500 * 109.47017 * 240.00148 * 11 9 7 15 15 C 1.46902 * 111.00170 * 196.42328 * 5 4 3 16 16 C 1.50694 * 109.47243 * 167.65184 * 15 5 4 17 17 C 1.38124 * 120.03989 * 108.29990 * 16 15 5 18 18 C 1.38264 * 120.07825 * 180.02562 * 17 16 15 19 19 C 1.38314 * 120.14602 * 359.71250 * 18 17 16 20 20 C 1.38081 * 120.07360 * 0.54445 * 19 18 17 21 21 C 1.38893 * 120.03818 * 288.32620 * 16 15 5 22 22 N 1.39676 * 120.07445 * 359.95718 * 21 16 15 23 23 C 1.48531 * 111.00082 * 176.67927 * 22 21 16 24 24 C 1.54931 * 103.22999 * 159.71843 * 23 22 21 25 25 C 1.54603 * 102.92147 * 322.58823 * 24 23 22 26 26 C 1.47904 * 110.99865 * 294.07361 * 22 21 16 27 27 H 1.08998 * 109.46979 * 299.99880 * 1 2 3 28 28 H 1.09000 * 109.46876 * 60.00239 * 1 2 3 29 29 H 1.09004 * 109.47166 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.47339 * 239.99847 * 2 1 3 31 31 H 1.09001 * 109.47094 * 120.00512 * 2 1 3 32 32 H 1.09004 * 109.47061 * 59.99677 * 3 2 1 33 33 H 1.08996 * 109.47434 * 299.99811 * 3 2 1 34 34 H 1.08994 * 109.47440 * 60.84678 * 4 3 2 35 35 H 1.09003 * 109.46939 * 300.84055 * 4 3 2 36 36 H 1.09000 * 109.47533 * 180.38114 * 6 5 4 37 37 H 1.08999 * 109.47116 * 300.38506 * 6 5 4 38 38 H 0.96999 * 119.99332 * 179.97438 * 10 9 7 39 39 H 1.09001 * 109.46709 * 47.65030 * 15 5 4 40 40 H 1.08997 * 109.47257 * 287.65334 * 15 5 4 41 41 H 1.07999 * 119.96235 * 0.03004 * 17 16 15 42 42 H 1.08000 * 119.92518 * 179.97438 * 18 17 16 43 43 H 1.08000 * 119.95646 * 180.29531 * 19 18 17 44 44 H 1.08001 * 120.03639 * 179.75083 * 20 19 18 45 45 H 1.09003 * 110.66751 * 278.15550 * 23 22 21 46 46 H 1.08998 * 110.67007 * 41.28269 * 23 22 21 47 47 H 1.08994 * 110.72939 * 204.22680 * 24 23 22 48 48 H 1.09000 * 110.72608 * 80.93631 * 24 23 22 49 49 H 1.09000 * 110.30511 * 263.04071 * 25 24 23 50 50 H 1.08994 * 110.30996 * 140.87151 * 25 24 23 51 51 H 1.09004 * 109.91309 * 333.50967 * 26 22 21 52 52 H 1.09003 * 109.92001 * 94.80114 * 26 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4424 -0.0006 5 7 4.0597 2.8272 0.0198 6 6 3.8463 3.4417 1.3369 7 6 4.5941 2.6574 2.3843 8 1 5.2168 1.8245 2.0929 9 6 4.4833 3.0032 3.7144 10 7 3.7246 4.0172 4.0691 11 14 5.4107 2.0315 5.0124 12 1 6.1882 0.9483 4.3584 13 1 6.3374 2.9357 5.7395 14 1 4.4441 1.4381 5.9710 15 6 5.4753 2.8909 -0.3677 16 6 5.8604 4.3240 -0.6299 17 6 6.6799 4.9933 0.2579 18 6 7.0333 6.3084 0.0184 19 6 6.5727 6.9563 -1.1135 20 6 5.7489 6.2947 -2.0025 21 6 5.3913 4.9735 -1.7645 22 7 4.5628 4.2996 -2.6646 23 6 4.1177 5.2024 -3.7569 24 6 3.6933 4.2205 -4.8777 25 6 4.7418 3.0902 -4.7624 26 6 5.2880 3.1933 -3.3263 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 1.8934 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8899 32 1 1.6766 1.9563 0.8900 33 1 1.6768 1.9563 -0.8899 34 1 3.9330 0.9419 -0.8983 35 1 3.9337 0.9154 0.8815 36 1 4.2116 4.4686 1.3224 37 1 2.7819 3.4381 1.5714 38 1 3.6464 4.2602 5.0049 39 1 5.6315 2.3015 -1.2712 40 1 6.0909 2.4909 0.4380 41 1 7.0450 4.4889 1.1403 42 1 7.6738 6.8295 0.7145 43 1 6.8545 7.9820 -1.3001 44 1 5.3864 6.8025 -2.8841 45 1 3.2704 5.8077 -3.4345 46 1 4.9393 5.8359 -4.0912 47 1 3.7506 4.7016 -5.8540 48 1 2.6901 3.8360 -4.6942 49 1 5.5441 3.2434 -5.4841 50 1 4.2708 2.1199 -4.9193 51 1 6.3558 3.4110 -3.3498 52 1 5.1082 2.2599 -2.7927 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001138612236.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:09:13 Heat of formation + Delta-G solvation = 33.827362 kcal Electronic energy + Delta-G solvation = -28118.604096 eV Core-core repulsion = 24696.702997 eV Total energy + Delta-G solvation = -3421.901099 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.17623 -37.58132 -36.77381 -34.17718 -32.57652 -32.24576 -31.13736 -28.87082 -28.35485 -27.90629 -26.70713 -24.46660 -23.11111 -22.96460 -21.57381 -20.67262 -20.28336 -19.96101 -19.34455 -16.96896 -16.32379 -15.94193 -15.23902 -15.13694 -14.89674 -14.57643 -14.41415 -14.02819 -13.71892 -13.47059 -13.29611 -12.97581 -12.72710 -12.61915 -12.33832 -12.16118 -12.02455 -11.95216 -11.62901 -11.44811 -11.15728 -11.11012 -11.09969 -10.94635 -10.70756 -10.64617 -10.55016 -10.40343 -10.37268 -10.16210 -9.92972 -9.83179 -9.74428 -9.42137 -9.04137 -8.34696 -8.22903 -7.39739 -6.92130 -5.93507 -4.02371 1.87908 1.91283 3.28338 3.37061 3.39366 4.07537 4.29888 4.45176 4.68122 4.75220 4.99266 5.13684 5.21749 5.34372 5.35640 5.40964 5.45421 5.47945 5.58485 5.63282 5.66508 5.75170 5.76709 5.80628 5.86576 5.92945 5.96971 6.02237 6.09054 6.19306 6.20828 6.23787 6.24405 6.30730 6.35772 6.47687 6.50156 6.60479 6.65676 6.67770 6.73223 6.95169 7.04722 7.10502 7.13702 7.19852 7.44493 7.46386 7.66651 7.79811 8.02772 8.23584 8.42494 8.50329 9.09851 9.62982 11.10160 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.009478 B = 0.005684 C = 0.003902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2953.506224 B = 4925.134648 C = 7174.787742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.121 4.121 3 C -0.106 4.106 4 C 0.065 3.935 5 N -0.519 5.519 6 C 0.188 3.812 7 C -0.541 4.541 8 H 0.054 0.946 9 C 0.066 3.934 10 N -0.889 5.889 11 Si 0.881 3.119 12 H -0.275 1.275 13 H -0.285 1.285 14 H -0.285 1.285 15 C 0.099 3.901 16 C -0.066 4.066 17 C -0.079 4.079 18 C -0.146 4.146 19 C -0.109 4.109 20 C -0.182 4.182 21 C 0.115 3.885 22 N -0.444 5.444 23 C 0.028 3.972 24 C -0.122 4.122 25 C -0.130 4.130 26 C 0.041 3.959 27 H 0.053 0.947 28 H 0.050 0.950 29 H 0.045 0.955 30 H 0.052 0.948 31 H 0.058 0.942 32 H 0.066 0.934 33 H 0.057 0.943 34 H 0.042 0.958 35 H 0.043 0.957 36 H 0.029 0.971 37 H 0.031 0.969 38 H 0.259 0.741 39 H 0.062 0.938 40 H 0.044 0.956 41 H 0.125 0.875 42 H 0.114 0.886 43 H 0.112 0.888 44 H 0.120 0.880 45 H 0.084 0.916 46 H 0.053 0.947 47 H 0.068 0.932 48 H 0.076 0.924 49 H 0.064 0.936 50 H 0.072 0.928 51 H 0.044 0.956 52 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.985 -0.404 -16.219 16.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.159 4.159 3 C -0.144 4.144 4 C -0.064 4.064 5 N -0.242 5.242 6 C 0.063 3.937 7 C -0.580 4.580 8 H 0.072 0.928 9 C -0.136 4.136 10 N -0.528 5.528 11 Si 0.709 3.291 12 H -0.200 1.200 13 H -0.211 1.211 14 H -0.211 1.211 15 C -0.028 4.028 16 C -0.068 4.068 17 C -0.098 4.098 18 C -0.165 4.165 19 C -0.128 4.128 20 C -0.203 4.203 21 C 0.018 3.982 22 N -0.160 5.160 23 C -0.099 4.099 24 C -0.160 4.160 25 C -0.168 4.168 26 C -0.085 4.085 27 H 0.072 0.928 28 H 0.069 0.931 29 H 0.064 0.936 30 H 0.071 0.929 31 H 0.076 0.924 32 H 0.085 0.915 33 H 0.076 0.924 34 H 0.060 0.940 35 H 0.061 0.939 36 H 0.047 0.953 37 H 0.049 0.951 38 H 0.069 0.931 39 H 0.080 0.920 40 H 0.062 0.938 41 H 0.143 0.857 42 H 0.132 0.868 43 H 0.130 0.870 44 H 0.138 0.862 45 H 0.102 0.898 46 H 0.071 0.929 47 H 0.087 0.913 48 H 0.094 0.906 49 H 0.082 0.918 50 H 0.090 0.910 51 H 0.063 0.937 52 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 1.170 -0.290 -16.155 16.199 hybrid contribution 1.520 -0.483 1.367 2.100 sum 2.689 -0.773 -14.787 15.050 Atomic orbital electron populations 1.21745 0.96560 1.00598 1.01680 1.21480 0.95198 0.98099 1.01153 1.21463 0.95817 0.94870 1.02281 1.21886 0.94741 0.90767 0.98984 1.62486 1.14292 1.15934 1.31487 1.19735 0.96949 0.94681 0.82373 1.21761 1.28600 1.15280 0.92369 0.92751 1.24915 0.95272 0.94975 0.98438 1.69968 1.38701 1.27251 1.16854 0.86718 0.79924 0.80215 0.82222 1.19956 1.21089 1.21077 1.20933 0.91688 0.91277 0.98944 1.19550 0.97224 0.97264 0.92810 1.21080 0.96571 0.94262 0.97933 1.20997 1.02292 0.95235 0.97939 1.20825 0.98094 0.98975 0.94916 1.21244 1.02161 0.95841 1.01037 1.18782 0.92403 0.92645 0.94394 1.61822 1.33365 1.08352 1.12420 1.23440 1.00101 0.95447 0.90934 1.22462 0.99722 0.96003 0.97821 1.22413 0.98543 0.99701 0.96139 1.22954 0.95861 0.96230 0.93415 0.92771 0.93113 0.93592 0.92944 0.92369 0.91509 0.92399 0.93986 0.93908 0.95330 0.95100 0.93072 0.91988 0.93824 0.85700 0.86830 0.87016 0.86197 0.89768 0.92891 0.91317 0.90575 0.91768 0.90968 0.93736 0.89274 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.99 9.91 37.16 0.37 -1.62 16 2 C -0.12 -1.83 5.93 -26.74 -0.16 -1.99 16 3 C -0.11 -1.93 5.28 -26.74 -0.14 -2.07 16 4 C 0.06 1.26 4.81 -3.82 -0.02 1.24 16 5 N -0.52 -11.04 4.63 -237.51 -1.10 -12.14 16 6 C 0.19 4.85 4.82 -4.97 -0.02 4.82 16 7 C -0.54 -14.59 7.28 -34.44 -0.25 -14.84 16 8 H 0.05 1.46 5.98 -52.49 -0.31 1.15 16 9 C 0.07 1.85 5.46 -17.82 -0.10 1.75 16 10 N -0.89 -26.25 13.29 55.43 0.74 -25.51 16 11 Si 0.88 21.42 29.54 -169.99 -5.02 16.40 16 12 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 13 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 14 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 15 C 0.10 1.94 4.36 -4.98 -0.02 1.92 16 16 C -0.07 -1.25 4.34 -104.42 -0.45 -1.70 16 17 C -0.08 -1.50 9.25 -39.61 -0.37 -1.87 16 18 C -0.15 -2.43 10.04 -39.54 -0.40 -2.83 16 19 C -0.11 -1.67 10.04 -39.61 -0.40 -2.06 16 20 C -0.18 -2.83 8.90 -39.38 -0.35 -3.18 16 21 C 0.12 1.98 5.23 -83.79 -0.44 1.54 16 22 N -0.44 -6.83 4.96 -167.16 -0.83 -7.66 16 23 C 0.03 0.35 5.55 -1.90 -0.01 0.34 16 24 C -0.12 -1.25 7.06 -24.87 -0.18 -1.42 16 25 C -0.13 -1.34 6.93 -25.37 -0.18 -1.51 16 26 C 0.04 0.54 5.32 -2.76 -0.01 0.52 16 27 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 28 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.04 0.54 8.14 -51.93 -0.42 0.11 16 30 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 32 H 0.07 1.40 6.75 -51.93 -0.35 1.05 16 33 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 34 H 0.04 0.73 7.76 -51.93 -0.40 0.33 16 35 H 0.04 0.93 6.26 -51.93 -0.33 0.61 16 36 H 0.03 0.81 6.93 -51.93 -0.36 0.45 16 37 H 0.03 0.88 6.70 -51.93 -0.35 0.53 16 38 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 39 H 0.06 1.08 4.46 -51.93 -0.23 0.85 16 40 H 0.04 0.94 6.20 -51.93 -0.32 0.61 16 41 H 0.13 2.46 7.98 -52.49 -0.42 2.04 16 42 H 0.11 1.66 8.06 -52.49 -0.42 1.24 16 43 H 0.11 1.39 8.06 -52.49 -0.42 0.97 16 44 H 0.12 1.58 5.58 -52.49 -0.29 1.29 16 45 H 0.08 1.08 8.14 -51.93 -0.42 0.65 16 46 H 0.05 0.61 5.96 -51.93 -0.31 0.30 16 47 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 48 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 49 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 50 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 51 H 0.04 0.59 7.76 -51.93 -0.40 0.19 16 52 H 0.09 1.26 6.04 -51.93 -0.31 0.95 16 LS Contribution 392.63 15.07 5.92 5.92 Total: -1.00 -29.52 392.63 -12.44 -41.97 By element: Atomic # 1 Polarization: 13.03 SS G_CDS: -9.02 Total: 4.01 kcal Atomic # 6 Polarization: -19.85 SS G_CDS: -3.12 Total: -22.97 kcal Atomic # 7 Polarization: -44.12 SS G_CDS: -1.19 Total: -45.32 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -29.52 -12.44 -41.97 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001138612236.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.793 kcal (2) G-P(sol) polarization free energy of solvation -29.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.445 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.966 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.827 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds