Wall clock time and date at job start Tue Mar 31 2020 11:09:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52990 * 109.47277 * 2 1 4 4 C 1.53001 * 109.47277 * 180.02562 * 3 2 1 5 5 N 1.46903 * 109.47193 * 180.84447 * 4 3 2 6 6 C 1.46904 * 111.00023 * 72.47120 * 5 4 3 7 7 C 1.50708 * 109.46975 * 60.38040 * 6 5 4 8 8 H 1.08001 * 119.99962 * 3.60394 * 7 6 5 9 9 C 1.37880 * 120.00051 * 183.60049 * 7 6 5 10 10 N 1.31520 * 119.99481 * 0.02562 * 9 7 6 11 11 Si 1.86788 * 120.00044 * 180.02562 * 9 7 6 12 12 H 1.48506 * 109.47343 * 0.02562 * 11 9 7 13 13 H 1.48503 * 109.47233 * 120.00094 * 11 9 7 14 14 H 1.48500 * 109.47017 * 240.00148 * 11 9 7 15 15 C 1.46902 * 111.00170 * 196.42328 * 5 4 3 16 16 C 1.50694 * 109.47243 * 167.65184 * 15 5 4 17 17 C 1.38124 * 120.03989 * 108.29990 * 16 15 5 18 18 C 1.38264 * 120.07825 * 180.02562 * 17 16 15 19 19 C 1.38314 * 120.14602 * 359.71250 * 18 17 16 20 20 C 1.38081 * 120.07360 * 0.54445 * 19 18 17 21 21 C 1.38893 * 120.03818 * 288.32620 * 16 15 5 22 22 N 1.39676 * 120.07445 * 359.95718 * 21 16 15 23 23 C 1.48531 * 111.00082 * 176.67927 * 22 21 16 24 24 C 1.54931 * 103.22999 * 159.71843 * 23 22 21 25 25 C 1.54603 * 102.92147 * 322.58823 * 24 23 22 26 26 C 1.47904 * 110.99865 * 294.07361 * 22 21 16 27 27 H 1.08998 * 109.46979 * 299.99880 * 1 2 3 28 28 H 1.09000 * 109.46876 * 60.00239 * 1 2 3 29 29 H 1.09004 * 109.47166 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.47339 * 239.99847 * 2 1 3 31 31 H 1.09001 * 109.47094 * 120.00512 * 2 1 3 32 32 H 1.09004 * 109.47061 * 59.99677 * 3 2 1 33 33 H 1.08996 * 109.47434 * 299.99811 * 3 2 1 34 34 H 1.08994 * 109.47440 * 60.84678 * 4 3 2 35 35 H 1.09003 * 109.46939 * 300.84055 * 4 3 2 36 36 H 1.09000 * 109.47533 * 180.38114 * 6 5 4 37 37 H 1.08999 * 109.47116 * 300.38506 * 6 5 4 38 38 H 0.96999 * 119.99332 * 179.97438 * 10 9 7 39 39 H 1.09001 * 109.46709 * 47.65030 * 15 5 4 40 40 H 1.08997 * 109.47257 * 287.65334 * 15 5 4 41 41 H 1.07999 * 119.96235 * 0.03004 * 17 16 15 42 42 H 1.08000 * 119.92518 * 179.97438 * 18 17 16 43 43 H 1.08000 * 119.95646 * 180.29531 * 19 18 17 44 44 H 1.08001 * 120.03639 * 179.75083 * 20 19 18 45 45 H 1.09003 * 110.66751 * 278.15550 * 23 22 21 46 46 H 1.08998 * 110.67007 * 41.28269 * 23 22 21 47 47 H 1.08994 * 110.72939 * 204.22680 * 24 23 22 48 48 H 1.09000 * 110.72608 * 80.93631 * 24 23 22 49 49 H 1.09000 * 110.30511 * 263.04071 * 25 24 23 50 50 H 1.08994 * 110.30996 * 140.87151 * 25 24 23 51 51 H 1.09004 * 109.91309 * 333.50967 * 26 22 21 52 52 H 1.09003 * 109.92001 * 94.80114 * 26 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4424 -0.0006 5 7 4.0597 2.8272 0.0198 6 6 3.8463 3.4417 1.3369 7 6 4.5941 2.6574 2.3843 8 1 5.2168 1.8245 2.0929 9 6 4.4833 3.0032 3.7144 10 7 3.7246 4.0172 4.0691 11 14 5.4107 2.0315 5.0124 12 1 6.1882 0.9483 4.3584 13 1 6.3374 2.9357 5.7395 14 1 4.4441 1.4381 5.9710 15 6 5.4753 2.8909 -0.3677 16 6 5.8604 4.3240 -0.6299 17 6 6.6799 4.9933 0.2579 18 6 7.0333 6.3084 0.0184 19 6 6.5727 6.9563 -1.1135 20 6 5.7489 6.2947 -2.0025 21 6 5.3913 4.9735 -1.7645 22 7 4.5628 4.2996 -2.6646 23 6 4.1177 5.2024 -3.7569 24 6 3.6933 4.2205 -4.8777 25 6 4.7418 3.0902 -4.7624 26 6 5.2880 3.1933 -3.3263 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 1.8934 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8899 32 1 1.6766 1.9563 0.8900 33 1 1.6768 1.9563 -0.8899 34 1 3.9330 0.9419 -0.8983 35 1 3.9337 0.9154 0.8815 36 1 4.2116 4.4686 1.3224 37 1 2.7819 3.4381 1.5714 38 1 3.6464 4.2602 5.0049 39 1 5.6315 2.3015 -1.2712 40 1 6.0909 2.4909 0.4380 41 1 7.0450 4.4889 1.1403 42 1 7.6738 6.8295 0.7145 43 1 6.8545 7.9820 -1.3001 44 1 5.3864 6.8025 -2.8841 45 1 3.2704 5.8077 -3.4345 46 1 4.9393 5.8359 -4.0912 47 1 3.7506 4.7016 -5.8540 48 1 2.6901 3.8360 -4.6942 49 1 5.5441 3.2434 -5.4841 50 1 4.2708 2.1199 -4.9193 51 1 6.3558 3.4110 -3.3498 52 1 5.1082 2.2599 -2.7927 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001138612236.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:09:12 Heat of formation + Delta-G solvation = 17.790504 kcal Electronic energy + Delta-G solvation = -28119.299506 eV Core-core repulsion = 24696.702997 eV Total energy + Delta-G solvation = -3422.596509 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.39215 -38.94254 -38.24899 -35.60749 -34.54309 -33.43429 -32.53552 -30.00390 -29.62921 -29.42491 -28.39321 -26.14102 -24.86497 -24.10612 -22.83561 -21.85839 -21.49864 -21.20979 -21.02515 -18.54305 -18.01067 -17.08549 -16.78119 -16.50164 -16.37949 -16.16408 -16.00924 -15.30200 -15.09304 -14.95982 -14.56311 -14.30346 -14.02493 -13.89245 -13.75200 -13.52159 -13.50637 -13.15387 -13.06503 -12.84119 -12.79970 -12.60163 -12.40541 -12.28275 -12.11716 -12.04838 -11.99717 -11.86244 -11.73910 -11.68889 -11.53895 -11.38104 -11.24866 -11.19198 -10.55851 -10.24643 -9.59673 -8.84148 -8.59352 -8.07762 -6.28234 0.56981 0.57816 1.32622 1.34254 1.45027 2.37282 2.84925 3.10045 3.14046 3.56002 3.75218 3.85347 4.05447 4.10892 4.12794 4.16438 4.23008 4.30218 4.37636 4.40160 4.50429 4.55998 4.59296 4.62945 4.76100 4.79622 4.81941 4.88302 4.94830 4.96465 5.02554 5.02786 5.05447 5.11508 5.14992 5.18152 5.20053 5.27902 5.30813 5.35734 5.39329 5.43904 5.51610 5.53875 5.59872 5.64778 5.78324 5.83087 5.99449 6.13498 6.19608 6.38984 6.54877 6.72944 6.95609 7.41772 8.91859 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.009478 B = 0.005684 C = 0.003902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2953.506224 B = 4925.134648 C = 7174.787742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.115 4.115 3 C -0.097 4.097 4 C 0.066 3.934 5 N -0.515 5.515 6 C 0.214 3.786 7 C -0.540 4.540 8 H 0.052 0.948 9 C 0.014 3.986 10 N -0.926 5.926 11 Si 0.948 3.052 12 H -0.267 1.267 13 H -0.280 1.280 14 H -0.280 1.280 15 C 0.107 3.893 16 C -0.095 4.095 17 C -0.104 4.104 18 C -0.157 4.157 19 C -0.102 4.102 20 C -0.184 4.184 21 C 0.113 3.887 22 N -0.467 5.467 23 C 0.024 3.976 24 C -0.114 4.114 25 C -0.122 4.122 26 C 0.040 3.960 27 H 0.039 0.961 28 H 0.060 0.940 29 H 0.068 0.932 30 H 0.075 0.925 31 H 0.048 0.952 32 H 0.028 0.972 33 H 0.062 0.938 34 H 0.070 0.930 35 H 0.017 0.983 36 H -0.005 1.005 37 H -0.003 1.003 38 H 0.262 0.738 39 H 0.085 0.915 40 H 0.016 0.984 41 H 0.100 0.900 42 H 0.129 0.871 43 H 0.147 0.853 44 H 0.149 0.851 45 H 0.076 0.924 46 H 0.067 0.933 47 H 0.095 0.905 48 H 0.069 0.931 49 H 0.083 0.917 50 H 0.080 0.920 51 H 0.042 0.958 52 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.247 -0.782 -18.850 19.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.154 4.154 3 C -0.135 4.135 4 C -0.062 4.062 5 N -0.237 5.237 6 C 0.087 3.913 7 C -0.579 4.579 8 H 0.070 0.930 9 C -0.185 4.185 10 N -0.567 5.567 11 Si 0.774 3.226 12 H -0.192 1.192 13 H -0.206 1.206 14 H -0.205 1.205 15 C -0.020 4.020 16 C -0.098 4.098 17 C -0.123 4.123 18 C -0.176 4.176 19 C -0.120 4.120 20 C -0.205 4.205 21 C 0.015 3.985 22 N -0.183 5.183 23 C -0.102 4.102 24 C -0.152 4.152 25 C -0.160 4.160 26 C -0.085 4.085 27 H 0.058 0.942 28 H 0.079 0.921 29 H 0.087 0.913 30 H 0.094 0.906 31 H 0.067 0.933 32 H 0.046 0.954 33 H 0.080 0.920 34 H 0.088 0.912 35 H 0.036 0.964 36 H 0.013 0.987 37 H 0.015 0.985 38 H 0.071 0.929 39 H 0.103 0.897 40 H 0.034 0.966 41 H 0.118 0.882 42 H 0.147 0.853 43 H 0.165 0.835 44 H 0.166 0.834 45 H 0.095 0.905 46 H 0.085 0.915 47 H 0.114 0.886 48 H 0.088 0.912 49 H 0.102 0.898 50 H 0.099 0.901 51 H 0.060 0.940 52 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 1.433 -0.686 -18.808 18.875 hybrid contribution 1.429 -0.327 2.105 2.565 sum 2.862 -1.013 -16.703 16.977 Atomic orbital electron populations 1.21720 0.95038 1.02023 1.01496 1.21438 0.96527 0.95622 1.01767 1.21371 0.94723 0.96912 1.00500 1.21956 0.95710 0.89483 0.99043 1.62423 1.15827 1.16936 1.28488 1.19215 0.94271 0.93252 0.84544 1.21930 1.28128 1.14963 0.92924 0.92956 1.25715 0.96150 0.95937 1.00689 1.70097 1.40279 1.28907 1.17384 0.85661 0.78679 0.78909 0.79391 1.19161 1.20556 1.20548 1.20898 0.89727 0.92661 0.98721 1.19556 0.98804 0.97109 0.94286 1.21059 0.97960 0.95680 0.97651 1.21219 1.02787 0.94389 0.99167 1.21230 0.96814 1.00331 0.93672 1.21612 1.01650 0.95266 1.01941 1.18943 0.92057 0.93440 0.94090 1.61755 1.33297 1.09573 1.13655 1.23538 1.00220 0.95756 0.90717 1.22452 0.99191 0.95405 0.98195 1.22400 0.99093 1.00260 0.94251 1.22947 0.95758 0.94746 0.95043 0.94176 0.92139 0.91335 0.90647 0.93347 0.95359 0.91960 0.91165 0.96441 0.98657 0.98484 0.92947 0.89699 0.96590 0.88172 0.85263 0.83510 0.83386 0.90519 0.91483 0.88619 0.91206 0.89840 0.90097 0.93997 0.90740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.70 9.91 71.98 0.71 -2.99 16 2 C -0.12 -3.39 5.93 30.59 0.18 -3.21 16 3 C -0.10 -3.59 5.28 30.59 0.16 -3.43 16 4 C 0.07 2.64 4.81 86.30 0.41 3.05 16 5 N -0.51 -22.85 4.63 -905.34 -4.20 -27.04 16 6 C 0.21 11.73 4.82 85.56 0.41 12.15 16 7 C -0.54 -30.63 7.28 25.60 0.19 -30.44 16 8 H 0.05 2.94 5.98 -2.91 -0.02 2.93 16 9 C 0.01 0.81 5.46 84.65 0.46 1.27 16 10 N -0.93 -56.96 13.29 21.45 0.28 -56.68 16 11 Si 0.95 45.21 29.54 68.60 2.03 47.24 16 12 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 13 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 14 H -0.28 -13.07 7.11 99.48 0.71 -12.37 16 15 C 0.11 4.38 4.36 85.55 0.37 4.75 16 16 C -0.10 -3.74 4.34 -19.74 -0.09 -3.83 16 17 C -0.10 -4.16 9.25 22.25 0.21 -3.96 16 18 C -0.16 -5.26 10.04 22.29 0.22 -5.04 16 19 C -0.10 -2.94 10.04 22.25 0.22 -2.71 16 20 C -0.18 -5.41 8.90 22.40 0.20 -5.21 16 21 C 0.11 3.84 5.23 38.21 0.20 4.04 16 22 N -0.47 -13.90 4.96 -682.79 -3.39 -17.29 16 23 C 0.02 0.54 5.55 86.65 0.48 1.02 16 24 C -0.11 -1.97 7.06 31.80 0.22 -1.75 16 25 C -0.12 -2.13 6.93 31.47 0.22 -1.91 16 26 C 0.04 1.00 5.32 86.44 0.46 1.46 16 27 H 0.04 1.11 8.14 -2.39 -0.02 1.10 16 28 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 29 H 0.07 1.44 8.14 -2.38 -0.02 1.43 16 30 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 31 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 32 H 0.03 1.25 6.75 -2.39 -0.02 1.23 16 33 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 34 H 0.07 2.40 7.76 -2.39 -0.02 2.38 16 35 H 0.02 0.78 6.26 -2.39 -0.01 0.77 16 36 H 0.00 -0.29 6.93 -2.39 -0.02 -0.30 16 37 H 0.00 -0.18 6.70 -2.39 -0.02 -0.20 16 38 H 0.26 15.18 8.31 -92.71 -0.77 14.41 16 39 H 0.09 3.01 4.46 -2.39 -0.01 3.00 16 40 H 0.02 0.73 6.20 -2.39 -0.01 0.71 16 41 H 0.10 4.34 7.98 -2.91 -0.02 4.31 16 42 H 0.13 3.78 8.06 -2.91 -0.02 3.76 16 43 H 0.15 3.16 8.06 -2.91 -0.02 3.14 16 44 H 0.15 3.44 5.58 -2.91 -0.02 3.43 16 45 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 46 H 0.07 1.32 5.96 -2.39 -0.01 1.30 16 47 H 0.10 1.17 8.14 -2.39 -0.02 1.15 16 48 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 49 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 50 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 51 H 0.04 1.06 7.76 -2.39 -0.02 1.04 16 52 H 0.07 2.03 6.04 -2.39 -0.01 2.01 16 Total: -1.00 -67.63 392.63 0.86 -66.77 By element: Atomic # 1 Polarization: 22.86 SS G_CDS: 0.88 Total: 23.74 kcal Atomic # 6 Polarization: -41.99 SS G_CDS: 5.26 Total: -36.74 kcal Atomic # 7 Polarization: -93.71 SS G_CDS: -7.30 Total: -101.01 kcal Atomic # 14 Polarization: 45.21 SS G_CDS: 2.03 Total: 47.24 kcal Total: -67.63 0.86 -66.77 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001138612236.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.564 kcal (2) G-P(sol) polarization free energy of solvation -67.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.859 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.773 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds