Wall clock time and date at job start Tue Mar 31 2020 10:55:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 C 1.38663 * 120.41837 * 2 1 4 4 C 1.38632 * 118.42014 * 179.97438 * 3 2 1 5 5 C 1.38220 * 119.16327 * 0.02562 * 4 3 2 6 6 C 1.50696 * 119.62071 * 180.02562 * 5 4 3 7 7 N 1.46899 * 109.47322 * 94.99819 * 6 5 4 8 8 C 1.46896 * 110.99939 * 66.04702 * 7 6 5 9 9 C 1.50701 * 109.47057 * 281.63073 * 8 7 6 10 10 H 1.07998 * 119.99952 * 354.66351 * 9 8 7 11 11 C 1.37882 * 120.00291 * 174.66708 * 9 8 7 12 12 N 1.31515 * 119.99748 * 359.97438 * 11 9 8 13 13 Si 1.86794 * 120.00320 * 179.97438 * 11 9 8 14 14 H 1.48509 * 109.47065 * 89.99836 * 13 11 9 15 15 H 1.48499 * 109.47238 * 209.99691 * 13 11 9 16 16 H 1.48500 * 109.46988 * 330.00043 * 13 11 9 17 17 C 1.46896 * 111.00112 * 190.00126 * 7 6 5 18 18 C 1.53017 * 109.47047 * 290.02473 * 17 7 6 19 19 C 1.52993 * 109.46248 * 164.04623 * 18 17 7 20 20 C 1.52981 * 109.50689 * 315.98907 * 19 18 17 21 21 C 1.53009 * 109.47263 * 112.93585 * 20 19 18 22 22 C 1.52998 * 109.42855 * 284.04107 * 21 20 19 23 23 C 1.52991 * 109.48806 * 75.96213 * 22 21 20 24 24 C 1.52998 * 109.50497 * 247.06241 * 23 22 21 25 25 N 1.31862 * 120.75967 * 359.72016 * 5 4 3 26 26 C 1.31888 * 121.72590 * 0.57225 * 25 5 4 27 27 H 1.09001 * 109.46525 * 270.02140 * 1 2 3 28 28 H 1.09000 * 109.47307 * 30.01628 * 1 2 3 29 29 H 1.08997 * 109.47226 * 150.02495 * 1 2 3 30 30 H 1.08007 * 120.79011 * 359.97438 * 3 2 1 31 31 H 1.08006 * 120.41561 * 179.97438 * 4 3 2 32 32 H 1.09002 * 109.47152 * 215.00158 * 6 5 4 33 33 H 1.09003 * 109.46835 * 334.99882 * 6 5 4 34 34 H 1.08997 * 109.47716 * 41.62579 * 8 7 6 35 35 H 1.08999 * 109.47519 * 161.63208 * 8 7 6 36 36 H 0.97000 * 120.00173 * 180.02562 * 12 11 9 37 37 H 1.09000 * 109.47029 * 50.01832 * 17 7 6 38 38 H 1.09008 * 109.47239 * 284.04261 * 18 17 7 39 39 H 1.09004 * 109.47341 * 44.04646 * 18 17 7 40 40 H 1.09001 * 109.46547 * 195.97558 * 19 18 17 41 41 H 1.09006 * 109.45775 * 75.99333 * 19 18 17 42 42 H 1.08996 * 109.47708 * 352.93196 * 20 19 18 43 43 H 1.09005 * 109.46845 * 232.93170 * 20 19 18 44 44 H 1.08996 * 109.47905 * 164.05344 * 21 20 19 45 45 H 1.09003 * 109.48365 * 44.03328 * 21 20 19 46 46 H 1.08998 * 109.46993 * 315.95560 * 22 21 20 47 47 H 1.09007 * 109.46570 * 195.95997 * 22 21 20 48 48 H 1.09002 * 109.46396 * 127.05236 * 23 22 21 49 49 H 1.08995 * 109.46085 * 7.07147 * 23 22 21 50 50 H 1.08997 * 109.47287 * 284.01492 * 24 23 22 51 51 H 1.08994 * 109.47486 * 164.00398 * 24 23 22 52 52 H 1.08003 * 119.61378 * 179.70396 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2092 1.1958 0.0000 4 6 3.5946 1.1474 0.0005 5 6 4.2257 -0.0823 0.0005 6 6 5.7313 -0.1469 0.0017 7 7 6.2142 -0.2890 1.3817 8 6 5.8086 -1.5810 1.9510 9 6 4.3629 -1.5132 2.3709 10 1 3.8260 -0.5782 2.3093 11 6 3.7256 -2.6449 2.8338 12 7 4.3793 -3.7837 2.9083 13 14 1.9338 -2.5608 3.3549 14 1 1.0643 -2.8506 2.1865 15 1 1.6808 -3.5632 4.4209 16 1 1.6319 -1.2017 3.8716 17 6 7.6716 -0.1181 1.4496 18 6 8.3570 -1.3166 0.7900 19 6 9.8194 -0.9721 0.5009 20 6 9.9048 0.4350 -0.0934 21 6 10.6139 1.3637 0.8945 22 6 9.6546 1.7271 2.0297 23 6 9.5260 0.5417 2.9883 24 6 8.1065 -0.0240 2.9136 25 7 3.5255 -1.1996 0.0055 26 6 2.2066 -1.1916 -0.0005 27 1 -0.3632 0.0004 1.0277 28 1 -0.3634 0.8898 -0.5141 29 1 -0.3633 -0.8902 -0.5134 30 1 1.6890 2.1423 -0.0004 31 1 4.1736 2.0592 0.0001 32 1 6.0587 -1.0032 -0.5879 33 1 6.1345 0.7683 -0.4319 34 1 5.9331 -2.3632 1.2022 35 1 6.4287 -1.8066 2.8185 36 1 3.9310 -4.5800 3.2336 37 1 7.9551 0.7955 0.9269 38 1 8.3116 -2.1753 1.4600 39 1 7.8489 -1.5571 -0.1439 40 1 10.2287 -1.6915 -0.2083 41 1 10.3915 -1.0102 1.4280 42 1 8.8996 0.8095 -0.2867 43 1 10.4659 0.4014 -1.0273 44 1 10.9274 2.2715 0.3790 45 1 11.4881 0.8585 1.3050 46 1 8.6755 1.9669 1.6151 47 1 10.0419 2.5909 2.5700 48 1 9.7317 0.8737 4.0060 49 1 10.2406 -0.2318 2.7072 50 1 7.4246 0.6329 3.4537 51 1 8.0868 -1.0168 3.3630 52 1 1.6672 -2.1273 -0.0009 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001139838783.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:55:34 Heat of formation + Delta-G solvation = 43.219638 kcal Electronic energy + Delta-G solvation = -28589.806397 eV Core-core repulsion = 25168.312577 eV Total energy + Delta-G solvation = -3421.493819 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -39.87792 -39.21904 -36.03846 -33.14239 -32.58762 -32.46298 -31.54672 -30.70757 -28.01103 -27.03732 -25.67635 -25.08070 -23.60185 -22.67300 -22.28765 -21.06741 -20.60300 -20.06958 -18.23628 -16.57464 -16.00634 -15.66420 -15.52939 -14.87880 -14.52138 -14.30190 -13.96603 -13.90850 -13.89607 -13.56765 -13.23773 -13.15069 -12.98600 -12.50396 -12.28349 -12.15282 -12.00866 -11.86786 -11.83107 -11.54467 -11.28754 -10.99680 -10.98686 -10.87865 -10.76844 -10.64894 -10.52492 -10.46424 -10.25688 -10.17277 -9.79552 -9.44357 -9.32861 -9.10303 -8.91056 -8.39482 -8.22706 -7.93619 -7.14766 -5.86482 -3.75721 1.86996 2.11470 3.34130 3.41990 3.45952 4.43010 4.59114 4.80511 4.98070 5.03104 5.13038 5.21660 5.30999 5.33451 5.40936 5.42645 5.48839 5.51110 5.52127 5.56224 5.60548 5.68358 5.72153 5.84363 5.87097 5.93242 6.00284 6.05120 6.10988 6.12317 6.12978 6.20355 6.24151 6.29432 6.32017 6.37239 6.44262 6.46175 6.54085 6.62450 6.66731 6.69806 6.85780 6.89477 6.92321 6.95291 7.34954 7.51950 7.55770 7.94831 8.22936 8.29885 8.69676 9.02306 9.19579 9.78568 11.24952 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.015197 B = 0.004710 C = 0.004018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1841.989528 B = 5943.472575 C = 6967.543822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.155 4.155 3 C -0.096 4.096 4 C -0.162 4.162 5 C 0.153 3.847 6 C 0.114 3.886 7 N -0.529 5.529 8 C 0.195 3.805 9 C -0.462 4.462 10 H 0.053 0.947 11 C 0.064 3.936 12 N -0.898 5.898 13 Si 0.873 3.127 14 H -0.277 1.277 15 H -0.291 1.291 16 H -0.277 1.277 17 C 0.074 3.926 18 C -0.149 4.149 19 C -0.122 4.122 20 C -0.127 4.127 21 C -0.117 4.117 22 C -0.128 4.128 23 C -0.124 4.124 24 C -0.106 4.106 25 N -0.404 5.404 26 C 0.094 3.906 27 H 0.064 0.936 28 H 0.060 0.940 29 H 0.063 0.937 30 H 0.119 0.881 31 H 0.121 0.879 32 H 0.042 0.958 33 H 0.065 0.935 34 H 0.005 0.995 35 H 0.024 0.976 36 H 0.256 0.744 37 H 0.089 0.911 38 H 0.066 0.934 39 H 0.058 0.942 40 H 0.051 0.949 41 H 0.070 0.930 42 H 0.072 0.928 43 H 0.052 0.948 44 H 0.053 0.947 45 H 0.059 0.941 46 H 0.076 0.924 47 H 0.052 0.948 48 H 0.054 0.946 49 H 0.068 0.932 50 H 0.068 0.932 51 H 0.063 0.937 52 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.583 10.132 -6.411 13.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.158 4.158 3 C -0.122 4.122 4 C -0.183 4.183 5 C 0.016 3.984 6 C -0.015 4.015 7 N -0.252 5.252 8 C 0.070 3.930 9 C -0.501 4.501 10 H 0.071 0.929 11 C -0.136 4.136 12 N -0.539 5.539 13 Si 0.702 3.298 14 H -0.203 1.203 15 H -0.217 1.217 16 H -0.202 1.202 17 C -0.035 4.035 18 C -0.188 4.188 19 C -0.160 4.160 20 C -0.165 4.165 21 C -0.154 4.154 22 C -0.166 4.166 23 C -0.162 4.162 24 C -0.144 4.144 25 N -0.111 5.111 26 C -0.064 4.064 27 H 0.083 0.917 28 H 0.079 0.921 29 H 0.082 0.918 30 H 0.137 0.863 31 H 0.139 0.861 32 H 0.060 0.940 33 H 0.083 0.917 34 H 0.023 0.977 35 H 0.042 0.958 36 H 0.066 0.934 37 H 0.107 0.893 38 H 0.085 0.915 39 H 0.076 0.924 40 H 0.069 0.931 41 H 0.088 0.912 42 H 0.091 0.909 43 H 0.071 0.929 44 H 0.072 0.928 45 H 0.078 0.922 46 H 0.094 0.906 47 H 0.071 0.929 48 H 0.072 0.928 49 H 0.086 0.914 50 H 0.087 0.913 51 H 0.082 0.918 52 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 5.786 9.516 -6.067 12.682 hybrid contribution -1.272 -0.054 0.127 1.280 sum 4.514 9.461 -5.940 12.049 Atomic orbital electron populations 1.20634 0.91580 1.02027 1.01881 1.20752 0.96604 0.94778 1.03624 1.21130 0.94065 0.97175 0.99815 1.21717 0.94654 0.98726 1.03204 1.20799 0.95903 0.88034 0.93671 1.20752 0.89439 0.99653 0.91626 1.62464 1.08762 1.38190 1.15823 1.19764 0.95929 0.83209 0.94080 1.21030 0.95607 0.94508 1.38995 0.92858 1.24732 0.97031 0.95442 0.96442 1.69928 1.36168 0.99780 1.47994 0.86890 0.87006 0.77525 0.78350 1.20276 1.21721 1.20247 1.22207 0.87890 0.97346 0.96023 1.22310 0.95100 1.00201 1.01222 1.21808 0.97604 0.95934 1.00669 1.21819 1.01102 0.95718 0.97823 1.21695 0.98148 0.98880 0.96692 1.21831 1.00292 0.97829 0.96602 1.21846 0.98130 0.97627 0.98585 1.21596 0.94927 1.01538 0.96361 1.67656 1.07010 1.30290 1.06160 1.22426 0.90394 0.96478 0.97115 0.91747 0.92084 0.91832 0.86304 0.86086 0.94026 0.91680 0.97723 0.95809 0.93403 0.89331 0.91536 0.92368 0.93063 0.91158 0.90917 0.92906 0.92772 0.92206 0.90555 0.92885 0.92767 0.91386 0.91301 0.91846 0.84429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.46 10.04 36.01 0.36 -1.10 16 2 C -0.16 -2.76 5.90 -104.48 -0.62 -3.37 16 3 C -0.10 -1.60 9.86 -39.28 -0.39 -1.99 16 4 C -0.16 -2.89 9.72 -39.44 -0.38 -3.27 16 5 C 0.15 3.13 4.32 -82.59 -0.36 2.78 16 6 C 0.11 2.17 4.85 -4.98 -0.02 2.15 16 7 N -0.53 -10.84 4.44 -229.51 -1.02 -11.86 16 8 C 0.19 4.91 3.33 -4.98 -0.02 4.89 16 9 C -0.46 -12.72 5.82 -34.44 -0.20 -12.92 16 10 H 0.05 1.53 6.52 -52.49 -0.34 1.18 16 11 C 0.06 1.81 5.46 -17.82 -0.10 1.72 16 12 N -0.90 -26.87 13.29 55.43 0.74 -26.13 16 13 Si 0.87 22.14 28.56 -169.99 -4.86 17.28 16 14 H -0.28 -6.68 7.04 56.52 0.40 -6.28 16 15 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 16 H -0.28 -7.07 7.11 56.52 0.40 -6.67 16 17 C 0.07 1.23 1.59 -67.70 -0.11 1.12 16 18 C -0.15 -2.43 4.12 -26.73 -0.11 -2.54 16 19 C -0.12 -1.58 5.48 -26.74 -0.15 -1.73 16 20 C -0.13 -1.46 5.47 -26.74 -0.15 -1.61 16 21 C -0.12 -1.22 5.59 -26.73 -0.15 -1.37 16 22 C -0.13 -1.48 5.47 -26.74 -0.15 -1.62 16 23 C -0.12 -1.60 5.48 -26.74 -0.15 -1.75 16 24 C -0.11 -1.75 4.57 -26.73 -0.12 -1.87 16 25 N -0.40 -9.14 7.47 -9.47 -0.07 -9.21 16 26 C 0.09 1.95 9.77 -17.55 -0.17 1.78 16 27 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 28 H 0.06 0.71 8.10 -51.93 -0.42 0.29 16 29 H 0.06 0.82 8.09 -51.93 -0.42 0.40 16 30 H 0.12 1.61 8.06 -52.48 -0.42 1.19 16 31 H 0.12 1.84 8.06 -52.48 -0.42 1.42 16 32 H 0.04 0.84 6.57 -51.93 -0.34 0.49 16 33 H 0.06 1.04 7.83 -51.93 -0.41 0.63 16 34 H 0.00 0.14 7.54 -51.93 -0.39 -0.25 16 35 H 0.02 0.64 6.09 -51.93 -0.32 0.33 16 36 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 37 H 0.09 1.33 2.62 -51.93 -0.14 1.19 16 38 H 0.07 1.24 7.34 -51.92 -0.38 0.86 16 39 H 0.06 1.01 6.39 -51.93 -0.33 0.68 16 40 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 41 H 0.07 0.89 4.69 -51.93 -0.24 0.64 16 42 H 0.07 0.90 5.47 -51.93 -0.28 0.61 16 43 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 44 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 45 H 0.06 0.60 7.47 -51.93 -0.39 0.21 16 46 H 0.08 0.96 5.47 -51.93 -0.28 0.68 16 47 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 48 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 49 H 0.07 0.85 4.69 -51.93 -0.24 0.61 16 50 H 0.07 1.23 8.14 -51.93 -0.42 0.80 16 51 H 0.06 1.17 6.62 -51.93 -0.34 0.82 16 52 H 0.14 2.80 7.99 -52.48 -0.42 2.38 16 LS Contribution 372.78 15.07 5.62 5.62 Total: -1.00 -30.26 372.78 -11.20 -41.46 By element: Atomic # 1 Polarization: 12.20 SS G_CDS: -8.64 Total: 3.56 kcal Atomic # 6 Polarization: -17.75 SS G_CDS: -2.97 Total: -20.71 kcal Atomic # 7 Polarization: -46.85 SS G_CDS: -0.35 Total: -47.21 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -4.86 Total: 17.28 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -30.26 -11.20 -41.46 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001139838783.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.678 kcal (2) G-P(sol) polarization free energy of solvation -30.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.417 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.458 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds