Wall clock time and date at job start Tue Mar 31 2020 10:55:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 C 1.38663 * 120.41837 * 2 1 4 4 C 1.38632 * 118.42014 * 179.97438 * 3 2 1 5 5 C 1.38220 * 119.16327 * 0.02562 * 4 3 2 6 6 C 1.50696 * 119.62071 * 180.02562 * 5 4 3 7 7 N 1.46899 * 109.47322 * 94.99819 * 6 5 4 8 8 C 1.46896 * 110.99939 * 66.04702 * 7 6 5 9 9 C 1.50701 * 109.47057 * 281.63073 * 8 7 6 10 10 H 1.07998 * 119.99952 * 354.66351 * 9 8 7 11 11 C 1.37882 * 120.00291 * 174.66708 * 9 8 7 12 12 N 1.31515 * 119.99748 * 359.97438 * 11 9 8 13 13 Si 1.86794 * 120.00320 * 179.97438 * 11 9 8 14 14 H 1.48509 * 109.47065 * 89.99836 * 13 11 9 15 15 H 1.48499 * 109.47238 * 209.99691 * 13 11 9 16 16 H 1.48500 * 109.46988 * 330.00043 * 13 11 9 17 17 C 1.46896 * 111.00112 * 190.00126 * 7 6 5 18 18 C 1.53017 * 109.47047 * 290.02473 * 17 7 6 19 19 C 1.52993 * 109.46248 * 164.04623 * 18 17 7 20 20 C 1.52981 * 109.50689 * 315.98907 * 19 18 17 21 21 C 1.53009 * 109.47263 * 112.93585 * 20 19 18 22 22 C 1.52998 * 109.42855 * 284.04107 * 21 20 19 23 23 C 1.52991 * 109.48806 * 75.96213 * 22 21 20 24 24 C 1.52998 * 109.50497 * 247.06241 * 23 22 21 25 25 N 1.31862 * 120.75967 * 359.72016 * 5 4 3 26 26 C 1.31888 * 121.72590 * 0.57225 * 25 5 4 27 27 H 1.09001 * 109.46525 * 270.02140 * 1 2 3 28 28 H 1.09000 * 109.47307 * 30.01628 * 1 2 3 29 29 H 1.08997 * 109.47226 * 150.02495 * 1 2 3 30 30 H 1.08007 * 120.79011 * 359.97438 * 3 2 1 31 31 H 1.08006 * 120.41561 * 179.97438 * 4 3 2 32 32 H 1.09002 * 109.47152 * 215.00158 * 6 5 4 33 33 H 1.09003 * 109.46835 * 334.99882 * 6 5 4 34 34 H 1.08997 * 109.47716 * 41.62579 * 8 7 6 35 35 H 1.08999 * 109.47519 * 161.63208 * 8 7 6 36 36 H 0.97000 * 120.00173 * 180.02562 * 12 11 9 37 37 H 1.09000 * 109.47029 * 50.01832 * 17 7 6 38 38 H 1.09008 * 109.47239 * 284.04261 * 18 17 7 39 39 H 1.09004 * 109.47341 * 44.04646 * 18 17 7 40 40 H 1.09001 * 109.46547 * 195.97558 * 19 18 17 41 41 H 1.09006 * 109.45775 * 75.99333 * 19 18 17 42 42 H 1.08996 * 109.47708 * 352.93196 * 20 19 18 43 43 H 1.09005 * 109.46845 * 232.93170 * 20 19 18 44 44 H 1.08996 * 109.47905 * 164.05344 * 21 20 19 45 45 H 1.09003 * 109.48365 * 44.03328 * 21 20 19 46 46 H 1.08998 * 109.46993 * 315.95560 * 22 21 20 47 47 H 1.09007 * 109.46570 * 195.95997 * 22 21 20 48 48 H 1.09002 * 109.46396 * 127.05236 * 23 22 21 49 49 H 1.08995 * 109.46085 * 7.07147 * 23 22 21 50 50 H 1.08997 * 109.47287 * 284.01492 * 24 23 22 51 51 H 1.08994 * 109.47486 * 164.00398 * 24 23 22 52 52 H 1.08003 * 119.61378 * 179.70396 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2092 1.1958 0.0000 4 6 3.5946 1.1474 0.0005 5 6 4.2257 -0.0823 0.0005 6 6 5.7313 -0.1469 0.0017 7 7 6.2142 -0.2890 1.3817 8 6 5.8086 -1.5810 1.9510 9 6 4.3629 -1.5132 2.3709 10 1 3.8260 -0.5782 2.3093 11 6 3.7256 -2.6449 2.8338 12 7 4.3793 -3.7837 2.9083 13 14 1.9338 -2.5608 3.3549 14 1 1.0643 -2.8506 2.1865 15 1 1.6808 -3.5632 4.4209 16 1 1.6319 -1.2017 3.8716 17 6 7.6716 -0.1181 1.4496 18 6 8.3570 -1.3166 0.7900 19 6 9.8194 -0.9721 0.5009 20 6 9.9048 0.4350 -0.0934 21 6 10.6139 1.3637 0.8945 22 6 9.6546 1.7271 2.0297 23 6 9.5260 0.5417 2.9883 24 6 8.1065 -0.0240 2.9136 25 7 3.5255 -1.1996 0.0055 26 6 2.2066 -1.1916 -0.0005 27 1 -0.3632 0.0004 1.0277 28 1 -0.3634 0.8898 -0.5141 29 1 -0.3633 -0.8902 -0.5134 30 1 1.6890 2.1423 -0.0004 31 1 4.1736 2.0592 0.0001 32 1 6.0587 -1.0032 -0.5879 33 1 6.1345 0.7683 -0.4319 34 1 5.9331 -2.3632 1.2022 35 1 6.4287 -1.8066 2.8185 36 1 3.9310 -4.5800 3.2336 37 1 7.9551 0.7955 0.9269 38 1 8.3116 -2.1753 1.4600 39 1 7.8489 -1.5571 -0.1439 40 1 10.2287 -1.6915 -0.2083 41 1 10.3915 -1.0102 1.4280 42 1 8.8996 0.8095 -0.2867 43 1 10.4659 0.4014 -1.0273 44 1 10.9274 2.2715 0.3790 45 1 11.4881 0.8585 1.3050 46 1 8.6755 1.9669 1.6151 47 1 10.0419 2.5909 2.5700 48 1 9.7317 0.8737 4.0060 49 1 10.2406 -0.2318 2.7072 50 1 7.4246 0.6329 3.4537 51 1 8.0868 -1.0168 3.3630 52 1 1.6672 -2.1273 -0.0009 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001139838783.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:55:33 Heat of formation + Delta-G solvation = 26.335884 kcal Electronic energy + Delta-G solvation = -28590.538531 eV Core-core repulsion = 25168.312577 eV Total energy + Delta-G solvation = -3422.225954 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.30939 -40.53565 -37.46288 -34.60941 -34.46759 -33.67843 -32.95236 -32.08002 -29.67207 -28.66786 -26.84767 -26.34369 -25.40187 -24.17570 -23.70910 -22.29049 -21.88325 -21.35655 -19.60749 -18.59224 -17.52162 -17.13293 -16.92136 -16.50937 -16.09088 -15.80452 -15.32090 -15.10428 -15.04467 -14.89764 -14.73123 -14.61272 -14.11425 -14.01291 -13.75676 -13.56049 -13.45478 -13.30693 -13.16496 -12.94010 -12.88772 -12.54913 -12.39084 -12.33721 -12.26047 -12.08452 -11.92628 -11.81534 -11.62829 -11.57680 -11.28590 -11.07246 -10.68174 -10.53107 -10.48762 -10.32037 -9.87956 -9.42879 -8.87869 -8.06493 -6.01828 0.40973 0.71234 1.30916 1.32323 1.40475 2.42704 2.97541 3.30851 3.56572 3.73675 3.76925 3.94174 4.03659 4.07514 4.07941 4.22496 4.26553 4.30387 4.32696 4.35958 4.39503 4.43945 4.45861 4.56961 4.66754 4.79635 4.81724 4.83382 4.91019 4.91792 5.02966 5.07870 5.10214 5.11792 5.15555 5.22576 5.24728 5.28126 5.34409 5.37837 5.39022 5.42325 5.45731 5.52397 5.54781 5.56974 5.69310 5.72380 5.78805 6.09438 6.22924 6.44655 6.77015 7.00537 7.53441 7.57161 9.05188 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.015197 B = 0.004710 C = 0.004018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1841.989528 B = 5943.472575 C = 6967.543822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.154 4.154 3 C -0.091 4.091 4 C -0.158 4.158 5 C 0.124 3.876 6 C 0.116 3.884 7 N -0.533 5.533 8 C 0.223 3.777 9 C -0.451 4.451 10 H 0.044 0.956 11 C 0.015 3.985 12 N -0.938 5.938 13 Si 0.924 3.076 14 H -0.261 1.261 15 H -0.292 1.292 16 H -0.275 1.275 17 C 0.075 3.925 18 C -0.141 4.141 19 C -0.116 4.116 20 C -0.124 4.124 21 C -0.112 4.112 22 C -0.125 4.125 23 C -0.117 4.117 24 C -0.102 4.102 25 N -0.451 5.451 26 C 0.067 3.933 27 H 0.065 0.935 28 H 0.093 0.907 29 H 0.069 0.931 30 H 0.162 0.838 31 H 0.152 0.848 32 H 0.021 0.979 33 H 0.103 0.897 34 H -0.036 1.036 35 H -0.004 1.004 36 H 0.254 0.746 37 H 0.119 0.881 38 H 0.028 0.972 39 H 0.042 0.958 40 H 0.057 0.943 41 H 0.076 0.924 42 H 0.064 0.936 43 H 0.070 0.930 44 H 0.074 0.926 45 H 0.068 0.932 46 H 0.066 0.934 47 H 0.071 0.929 48 H 0.063 0.937 49 H 0.073 0.927 50 H 0.052 0.948 51 H 0.029 0.971 52 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.602 13.967 -7.367 16.755 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.156 4.156 3 C -0.117 4.117 4 C -0.178 4.178 5 C -0.014 4.014 6 C -0.012 4.012 7 N -0.256 5.256 8 C 0.097 3.903 9 C -0.491 4.491 10 H 0.063 0.937 11 C -0.181 4.181 12 N -0.581 5.581 13 Si 0.751 3.249 14 H -0.186 1.186 15 H -0.219 1.219 16 H -0.200 1.200 17 C -0.032 4.032 18 C -0.181 4.181 19 C -0.154 4.154 20 C -0.162 4.162 21 C -0.150 4.150 22 C -0.162 4.162 23 C -0.155 4.155 24 C -0.140 4.140 25 N -0.160 5.160 26 C -0.091 4.091 27 H 0.083 0.917 28 H 0.111 0.889 29 H 0.088 0.912 30 H 0.179 0.821 31 H 0.170 0.830 32 H 0.039 0.961 33 H 0.121 0.879 34 H -0.019 1.019 35 H 0.014 0.986 36 H 0.063 0.937 37 H 0.136 0.864 38 H 0.047 0.953 39 H 0.060 0.940 40 H 0.076 0.924 41 H 0.094 0.906 42 H 0.083 0.917 43 H 0.089 0.911 44 H 0.093 0.907 45 H 0.086 0.914 46 H 0.085 0.915 47 H 0.090 0.910 48 H 0.082 0.918 49 H 0.091 0.909 50 H 0.071 0.929 51 H 0.048 0.952 52 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 5.802 13.370 -7.034 16.184 hybrid contribution -1.290 -1.193 0.356 1.792 sum 4.512 12.177 -6.678 14.603 Atomic orbital electron populations 1.20719 0.88772 1.04047 1.02461 1.21144 0.98689 0.94030 1.01758 1.21643 0.93770 0.98460 0.97780 1.22070 0.95676 0.98633 1.01434 1.21066 0.96271 0.88792 0.95237 1.20837 0.89531 1.00524 0.90298 1.62392 1.11415 1.34738 1.17062 1.19218 0.94635 0.84491 0.91930 1.21108 0.96309 0.93839 1.37823 0.93745 1.25389 1.00620 0.95203 0.96917 1.70064 1.37721 1.00422 1.49937 0.86078 0.83188 0.77333 0.78342 1.18583 1.21873 1.19960 1.22386 0.85646 0.98559 0.96645 1.22180 0.97836 0.98688 0.99352 1.21781 0.94561 0.97668 1.01366 1.21797 1.01147 0.94327 0.98891 1.21682 0.97827 0.99495 0.95957 1.21803 1.00248 0.97457 0.96729 1.21807 0.95212 0.98462 0.99983 1.21534 0.97362 0.99510 0.95626 1.67507 1.08361 1.32280 1.07813 1.22476 0.90205 0.97541 0.98835 0.91663 0.88865 0.91181 0.82083 0.83003 0.96081 0.87852 1.01860 0.98587 0.93695 0.86374 0.95285 0.93974 0.92440 0.90566 0.91723 0.91148 0.90714 0.91356 0.91540 0.91046 0.91807 0.90887 0.92908 0.95226 0.85617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.56 10.04 71.24 0.72 -1.85 16 2 C -0.15 -5.16 5.90 -19.77 -0.12 -5.28 16 3 C -0.09 -2.73 9.86 22.47 0.22 -2.50 16 4 C -0.16 -5.23 9.72 22.36 0.22 -5.01 16 5 C 0.12 5.06 4.32 42.55 0.18 5.25 16 6 C 0.12 4.49 4.85 85.56 0.42 4.90 16 7 N -0.53 -22.58 4.44 -880.04 -3.91 -26.49 16 8 C 0.22 12.04 3.33 85.56 0.28 12.33 16 9 C -0.45 -25.95 5.82 25.60 0.15 -25.80 16 10 H 0.04 2.60 6.52 -2.91 -0.02 2.58 16 11 C 0.01 0.88 5.46 84.66 0.46 1.34 16 12 N -0.94 -59.32 13.29 21.45 0.28 -59.04 16 13 Si 0.92 46.57 28.56 68.60 1.96 48.53 16 14 H -0.26 -12.33 7.04 99.48 0.70 -11.63 16 15 H -0.29 -14.69 7.11 99.48 0.71 -13.98 16 16 H -0.27 -13.59 7.11 99.48 0.71 -12.89 16 17 C 0.07 2.55 1.59 44.92 0.07 2.62 16 18 C -0.14 -4.86 4.12 30.60 0.13 -4.73 16 19 C -0.12 -2.92 5.48 30.59 0.17 -2.75 16 20 C -0.12 -2.50 5.47 30.59 0.17 -2.34 16 21 C -0.11 -1.91 5.59 30.60 0.17 -1.74 16 22 C -0.13 -2.50 5.47 30.59 0.17 -2.33 16 23 C -0.12 -2.87 5.48 30.59 0.17 -2.70 16 24 C -0.10 -3.47 4.57 30.60 0.14 -3.33 16 25 N -0.45 -21.10 7.47 -183.89 -1.37 -22.48 16 26 C 0.07 2.82 9.77 84.67 0.83 3.65 16 27 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 28 H 0.09 1.73 8.10 -2.39 -0.02 1.71 16 29 H 0.07 1.65 8.09 -2.39 -0.02 1.63 16 30 H 0.16 3.46 8.06 -2.91 -0.02 3.44 16 31 H 0.15 3.99 8.06 -2.91 -0.02 3.97 16 32 H 0.02 0.89 6.57 -2.39 -0.02 0.88 16 33 H 0.10 3.11 7.83 -2.39 -0.02 3.09 16 34 H -0.04 -2.24 7.54 -2.39 -0.02 -2.25 16 35 H 0.00 -0.22 6.09 -2.39 -0.01 -0.24 16 36 H 0.25 15.41 8.31 -92.71 -0.77 14.64 16 37 H 0.12 3.38 2.62 -2.39 -0.01 3.37 16 38 H 0.03 1.18 7.34 -2.38 -0.02 1.16 16 39 H 0.04 1.56 6.39 -2.38 -0.02 1.55 16 40 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 41 H 0.08 1.84 4.69 -2.38 -0.01 1.83 16 42 H 0.06 1.42 5.47 -2.39 -0.01 1.40 16 43 H 0.07 1.22 8.14 -2.38 -0.02 1.20 16 44 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 45 H 0.07 1.10 7.47 -2.39 -0.02 1.08 16 46 H 0.07 1.47 5.47 -2.39 -0.01 1.46 16 47 H 0.07 1.21 8.14 -2.38 -0.02 1.19 16 48 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 49 H 0.07 1.73 4.69 -2.39 -0.01 1.72 16 50 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 51 H 0.03 1.18 6.62 -2.39 -0.02 1.16 16 52 H 0.13 5.32 7.99 -2.91 -0.02 5.29 16 Total: -1.00 -71.42 372.78 2.39 -69.03 By element: Atomic # 1 Polarization: 19.83 SS G_CDS: 0.89 Total: 20.73 kcal Atomic # 6 Polarization: -34.82 SS G_CDS: 4.54 Total: -30.28 kcal Atomic # 7 Polarization: -103.01 SS G_CDS: -5.00 Total: -108.01 kcal Atomic # 14 Polarization: 46.57 SS G_CDS: 1.96 Total: 48.53 kcal Total: -71.42 2.39 -69.03 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001139838783.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.366 kcal (2) G-P(sol) polarization free energy of solvation -71.419 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.948 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.031 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.336 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds