Wall clock time and date at job start Tue Mar 31 2020 10:54:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38227 * 119.61872 * 2 1 4 4 C 1.38629 * 119.16273 * 179.74731 * 3 2 1 5 5 C 1.38673 * 118.41817 * 0.47319 * 4 3 2 6 6 C 1.50700 * 120.41651 * 179.78255 * 5 4 3 7 7 N 1.46902 * 109.47066 * 269.72021 * 6 5 4 8 8 C 1.46905 * 110.99964 * 283.87204 * 7 6 5 9 9 C 1.50697 * 109.47337 * 164.29137 * 8 7 6 10 10 H 1.08005 * 119.99759 * 356.60781 * 9 8 7 11 11 C 1.37873 * 120.00265 * 176.60719 * 9 8 7 12 12 N 1.31512 * 119.99908 * 179.97438 * 11 9 8 13 13 Si 1.86802 * 120.00015 * 359.97438 * 11 9 8 14 14 H 1.48500 * 109.47197 * 270.00456 * 13 11 9 15 15 H 1.48509 * 109.46882 * 30.00125 * 13 11 9 16 16 H 1.48496 * 109.47281 * 149.99774 * 13 11 9 17 17 C 1.46901 * 111.00127 * 159.92262 * 7 6 5 18 18 C 1.53011 * 109.47108 * 53.17947 * 17 7 6 19 19 C 1.52998 * 109.46014 * 164.04883 * 18 17 7 20 20 C 1.52980 * 109.50616 * 315.99174 * 19 18 17 21 21 C 1.53003 * 109.47062 * 112.93640 * 20 19 18 22 22 C 1.53006 * 109.43069 * 284.03787 * 21 20 19 23 23 C 1.52977 * 109.48178 * 75.96266 * 22 21 20 24 24 C 1.53001 * 109.50412 * 247.06028 * 23 22 21 25 25 C 1.38177 * 119.16609 * 359.50602 * 5 4 3 26 26 N 1.31860 * 119.62158 * 179.97438 * 2 1 3 27 27 H 1.09000 * 109.47137 * 270.02046 * 1 2 3 28 28 H 1.08995 * 109.47289 * 30.02734 * 1 2 3 29 29 H 1.09008 * 109.46875 * 150.02345 * 1 2 3 30 30 H 1.08000 * 120.41596 * 359.97438 * 3 2 1 31 31 H 1.07999 * 120.79265 * 180.22706 * 4 3 2 32 32 H 1.09001 * 109.46800 * 149.71845 * 6 5 4 33 33 H 1.08993 * 109.47368 * 29.71791 * 6 5 4 34 34 H 1.09002 * 109.47232 * 44.28911 * 8 7 6 35 35 H 1.09003 * 109.46972 * 284.29340 * 8 7 6 36 36 H 0.97006 * 119.99783 * 179.97438 * 12 11 9 37 37 H 1.08995 * 109.47334 * 173.18464 * 17 7 6 38 38 H 1.08998 * 109.47843 * 284.04550 * 18 17 7 39 39 H 1.08999 * 109.47426 * 44.05453 * 18 17 7 40 40 H 1.09001 * 109.46335 * 195.97894 * 19 18 17 41 41 H 1.09002 * 109.45489 * 75.99246 * 19 18 17 42 42 H 1.09000 * 109.47753 * 352.93252 * 20 19 18 43 43 H 1.09010 * 109.46837 * 232.93213 * 20 19 18 44 44 H 1.09004 * 109.47900 * 164.05042 * 21 20 19 45 45 H 1.09001 * 109.48785 * 44.03207 * 21 20 19 46 46 H 1.08995 * 109.46740 * 315.95502 * 22 21 20 47 47 H 1.09003 * 109.46200 * 195.96591 * 22 21 20 48 48 H 1.09009 * 109.46608 * 127.05417 * 23 22 21 49 49 H 1.09001 * 109.47401 * 7.07799 * 23 22 21 50 50 H 1.08995 * 109.47357 * 284.01827 * 24 23 22 51 51 H 1.09004 * 109.47563 * 164.01074 * 24 23 22 52 52 H 1.07998 * 119.62034 * 180.25450 * 25 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1901 1.2017 0.0000 4 6 3.5764 1.1906 0.0053 5 6 4.2266 -0.0342 0.0004 6 6 5.7322 -0.0987 0.0010 7 7 6.2219 -0.1204 -1.3839 8 6 6.0307 -1.4453 -1.9891 9 6 6.1742 -1.3395 -3.4855 10 1 6.3317 -0.3753 -3.9460 11 6 6.1045 -2.4734 -4.2667 12 7 6.2292 -2.3809 -5.5726 13 14 5.8328 -4.1411 -3.4701 14 1 7.1456 -4.7510 -3.1386 15 1 5.0374 -3.9724 -2.2274 16 1 5.0995 -5.0254 -4.4110 17 6 7.6307 0.2904 -1.4506 18 6 8.4564 -0.5600 -0.4830 19 6 9.9415 -0.4246 -0.8252 20 6 10.1268 -0.5162 -2.3410 21 6 10.6009 0.8353 -2.8794 22 6 9.4213 1.8090 -2.9205 23 6 9.1149 2.2993 -1.5043 24 6 7.7506 1.7657 -1.0629 25 6 3.4767 -1.1947 0.0009 26 7 2.1587 -1.1463 0.0005 27 1 -0.3633 0.0004 1.0277 28 1 -0.3633 0.8897 -0.5142 29 1 -0.3633 -0.8903 -0.5135 30 1 1.6507 2.1373 -0.0004 31 1 4.1366 2.1139 0.0092 32 1 6.0569 -1.0031 0.5155 33 1 6.1332 0.7752 0.5144 34 1 5.0352 -1.8161 -1.7449 35 1 6.7805 -2.1341 -1.6000 36 1 6.1805 -3.1787 -6.1222 37 1 8.0024 0.1502 -2.4656 38 1 8.2862 -0.2178 0.5378 39 1 8.1571 -1.6044 -0.5708 40 1 10.5001 -1.2262 -0.3419 41 1 10.3091 0.5388 -0.4719 42 1 9.1779 -0.7806 -2.8078 43 1 10.8700 -1.2798 -2.5707 44 1 11.0007 0.7059 -3.8852 45 1 11.3785 1.2337 -2.2277 46 1 8.5461 1.3023 -3.3270 47 1 9.6748 2.6599 -3.5528 48 1 9.0997 3.3892 -1.4925 49 1 9.8841 1.9396 -0.8208 50 1 6.9615 2.3356 -1.5534 51 1 7.6533 1.8663 0.0181 52 1 3.9755 -2.1526 0.0012 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001139931157.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:54:54 Heat of formation + Delta-G solvation = 33.037248 kcal Electronic energy + Delta-G solvation = -28286.711168 eV Core-core repulsion = 24864.775807 eV Total energy + Delta-G solvation = -3421.935361 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.16421 -39.40052 -36.25168 -33.19434 -32.62952 -32.45427 -31.99671 -30.98799 -28.82040 -27.34364 -25.59850 -25.28770 -23.95479 -23.08405 -21.63612 -21.43044 -20.57279 -20.17325 -18.29299 -16.80230 -16.31642 -15.96234 -15.84594 -15.33177 -14.67497 -14.32641 -14.24428 -13.95031 -13.84154 -13.78647 -13.40952 -13.14827 -12.95577 -12.82809 -12.50735 -12.41491 -12.20490 -12.18789 -11.95571 -11.69097 -11.47541 -11.28732 -11.05468 -10.92350 -10.81279 -10.69110 -10.62942 -10.35133 -10.15412 -10.01856 -9.85317 -9.50099 -9.42301 -9.31410 -9.22200 -9.10805 -8.55293 -8.44776 -7.34031 -6.04207 -4.00298 1.40679 1.62187 3.27821 3.36797 3.38639 4.02085 4.42836 4.56803 4.79816 4.93554 4.96090 5.13799 5.18135 5.19861 5.26255 5.28908 5.34358 5.39873 5.50628 5.55798 5.56377 5.59709 5.64274 5.65769 5.68672 5.76258 5.82869 5.91105 6.00986 6.06292 6.12645 6.16849 6.20161 6.22937 6.28665 6.31715 6.38267 6.41217 6.47824 6.53056 6.56394 6.63958 6.65893 6.71429 6.80738 6.89172 7.02570 7.04239 7.17086 7.65252 7.91003 8.05967 8.31007 8.66985 9.05281 9.58582 11.08816 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.010388 B = 0.005400 C = 0.004035 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2694.867785 B = 5184.411324 C = 6936.940389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C 0.113 3.887 3 C -0.176 4.176 4 C -0.056 4.056 5 C -0.114 4.114 6 C 0.090 3.910 7 N -0.514 5.514 8 C 0.156 3.844 9 C -0.502 4.502 10 H 0.080 0.920 11 C 0.071 3.929 12 N -0.899 5.899 13 Si 0.867 3.133 14 H -0.278 1.278 15 H -0.267 1.267 16 H -0.286 1.286 17 C 0.072 3.928 18 C -0.151 4.151 19 C -0.117 4.117 20 C -0.137 4.137 21 C -0.113 4.113 22 C -0.133 4.133 23 C -0.122 4.122 24 C -0.110 4.110 25 C 0.114 3.886 26 N -0.487 5.487 27 H 0.072 0.928 28 H 0.071 0.929 29 H 0.074 0.926 30 H 0.128 0.872 31 H 0.130 0.870 32 H 0.037 0.963 33 H 0.075 0.925 34 H 0.028 0.972 35 H -0.010 1.010 36 H 0.263 0.737 37 H 0.125 0.875 38 H 0.051 0.949 39 H 0.063 0.937 40 H 0.048 0.952 41 H 0.067 0.933 42 H 0.093 0.907 43 H 0.052 0.948 44 H 0.056 0.944 45 H 0.054 0.946 46 H 0.086 0.914 47 H 0.052 0.948 48 H 0.052 0.948 49 H 0.067 0.933 50 H 0.068 0.932 51 H 0.049 0.951 52 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.074 8.468 12.625 15.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.025 4.025 3 C -0.195 4.195 4 C -0.082 4.082 5 C -0.116 4.116 6 C -0.039 4.039 7 N -0.236 5.236 8 C 0.030 3.970 9 C -0.541 4.541 10 H 0.098 0.902 11 C -0.130 4.130 12 N -0.538 5.538 13 Si 0.695 3.305 14 H -0.204 1.204 15 H -0.192 1.192 16 H -0.212 1.212 17 C -0.036 4.036 18 C -0.190 4.190 19 C -0.155 4.155 20 C -0.174 4.174 21 C -0.150 4.150 22 C -0.170 4.170 23 C -0.159 4.159 24 C -0.148 4.148 25 C -0.044 4.044 26 N -0.196 5.196 27 H 0.090 0.910 28 H 0.090 0.910 29 H 0.093 0.907 30 H 0.146 0.854 31 H 0.148 0.852 32 H 0.055 0.945 33 H 0.094 0.906 34 H 0.046 0.954 35 H 0.007 0.993 36 H 0.072 0.928 37 H 0.142 0.858 38 H 0.070 0.930 39 H 0.082 0.918 40 H 0.067 0.933 41 H 0.086 0.914 42 H 0.111 0.889 43 H 0.071 0.929 44 H 0.075 0.925 45 H 0.072 0.928 46 H 0.105 0.895 47 H 0.071 0.929 48 H 0.070 0.930 49 H 0.085 0.915 50 H 0.086 0.914 51 H 0.068 0.932 52 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 0.299 7.912 12.175 14.524 hybrid contribution 0.862 -0.884 0.699 1.418 sum 1.161 7.029 12.874 14.714 Atomic orbital electron populations 1.20649 0.89406 1.03211 1.02438 1.21187 0.96716 0.88612 0.96023 1.21844 0.94920 0.98855 1.03925 1.21363 0.93912 0.97860 0.95112 1.20823 0.97309 0.93852 0.99614 1.20981 0.89677 1.00641 0.92567 1.62253 1.17372 1.30790 1.13222 1.20312 0.95580 0.84889 0.96242 1.20956 1.48852 0.95576 0.88685 0.90228 1.24851 0.94984 0.98533 0.94671 1.69884 1.50788 1.29174 1.03934 0.86984 0.78632 0.85080 0.79853 1.20361 1.19170 1.21205 1.22334 0.86859 0.92550 1.01847 1.22329 0.95976 1.01474 0.99220 1.21743 0.96244 1.01136 0.96406 1.21906 1.03106 0.96721 0.95699 1.21640 0.97279 0.95665 1.00446 1.21863 0.99713 0.98753 0.96699 1.21803 0.97701 0.99292 0.97122 1.21682 0.97012 0.96515 0.99586 1.22609 0.89048 0.98164 0.94545 1.67477 1.09984 1.29370 1.12816 0.90974 0.91035 0.90714 0.85387 0.85168 0.94494 0.90648 0.95396 0.99273 0.92755 0.85784 0.93029 0.91803 0.93280 0.91438 0.88896 0.92940 0.92531 0.92752 0.89530 0.92909 0.92957 0.91454 0.91356 0.93212 0.83394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.13 10.17 36.00 0.37 -0.77 16 2 C 0.11 1.71 6.78 -82.59 -0.56 1.15 16 3 C -0.18 -2.43 9.74 -39.44 -0.38 -2.82 16 4 C -0.06 -0.83 9.86 -39.28 -0.39 -1.21 16 5 C -0.11 -1.89 5.18 -104.48 -0.54 -2.43 16 6 C 0.09 1.46 3.88 -4.97 -0.02 1.44 16 7 N -0.51 -9.90 4.31 -229.51 -0.99 -10.89 16 8 C 0.16 3.60 3.51 -4.97 -0.02 3.58 16 9 C -0.50 -13.74 8.95 -34.44 -0.31 -14.05 16 10 H 0.08 2.39 7.92 -52.48 -0.42 1.97 16 11 C 0.07 2.02 5.47 -17.82 -0.10 1.93 16 12 N -0.90 -27.13 13.96 55.43 0.77 -26.35 16 13 Si 0.87 21.51 27.40 -169.99 -4.66 16.86 16 14 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 15 H -0.27 -6.42 6.64 56.52 0.38 -6.04 16 16 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 17 C 0.07 1.22 1.49 -67.70 -0.10 1.12 16 18 C -0.15 -2.34 4.04 -26.73 -0.11 -2.45 16 19 C -0.12 -1.63 5.48 -26.74 -0.15 -1.78 16 20 C -0.14 -2.11 5.47 -26.74 -0.15 -2.25 16 21 C -0.11 -1.54 5.59 -26.73 -0.15 -1.69 16 22 C -0.13 -1.89 5.47 -26.74 -0.15 -2.03 16 23 C -0.12 -1.55 5.48 -26.74 -0.15 -1.69 16 24 C -0.11 -1.57 4.59 -26.73 -0.12 -1.69 16 25 C 0.11 2.04 9.48 -17.55 -0.17 1.88 16 26 N -0.49 -8.73 10.27 -9.48 -0.10 -8.82 16 27 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 28 H 0.07 0.67 8.08 -51.93 -0.42 0.25 16 29 H 0.07 0.89 8.14 -51.92 -0.42 0.46 16 30 H 0.13 1.37 8.06 -52.49 -0.42 0.95 16 31 H 0.13 1.64 8.06 -52.49 -0.42 1.22 16 32 H 0.04 0.59 7.56 -51.93 -0.39 0.20 16 33 H 0.08 1.06 6.16 -51.93 -0.32 0.74 16 34 H 0.03 0.68 4.91 -51.93 -0.26 0.42 16 35 H -0.01 -0.24 5.39 -51.93 -0.28 -0.52 16 36 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 37 H 0.13 2.43 1.84 -51.93 -0.10 2.33 16 38 H 0.05 0.72 7.35 -51.93 -0.38 0.34 16 39 H 0.06 1.12 6.16 -51.93 -0.32 0.80 16 40 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 41 H 0.07 0.84 4.69 -51.93 -0.24 0.60 16 42 H 0.09 1.76 5.47 -51.93 -0.28 1.48 16 43 H 0.05 0.77 8.14 -51.92 -0.42 0.35 16 44 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 45 H 0.05 0.65 7.47 -51.93 -0.39 0.26 16 46 H 0.09 1.50 5.47 -51.93 -0.28 1.21 16 47 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 48 H 0.05 0.60 8.14 -51.92 -0.42 0.18 16 49 H 0.07 0.81 4.69 -51.93 -0.24 0.56 16 50 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 51 H 0.05 0.64 6.66 -51.93 -0.35 0.30 16 52 H 0.15 2.64 7.47 -52.49 -0.39 2.25 16 LS Contribution 374.30 15.07 5.64 5.64 Total: -1.00 -30.26 374.30 -10.96 -41.22 By element: Atomic # 1 Polarization: 14.58 SS G_CDS: -8.45 Total: 6.13 kcal Atomic # 6 Polarization: -20.59 SS G_CDS: -3.18 Total: -23.78 kcal Atomic # 7 Polarization: -45.76 SS G_CDS: -0.31 Total: -46.07 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -4.66 Total: 16.86 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -30.26 -10.96 -41.22 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001139931157.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.257 kcal (2) G-P(sol) polarization free energy of solvation -30.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.001 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.219 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds