Wall clock time and date at job start Tue Mar 31 2020 10:54:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38227 * 119.61872 * 2 1 4 4 C 1.38629 * 119.16273 * 179.74731 * 3 2 1 5 5 C 1.38673 * 118.41817 * 0.47319 * 4 3 2 6 6 C 1.50700 * 120.41651 * 179.78255 * 5 4 3 7 7 N 1.46902 * 109.47066 * 269.72021 * 6 5 4 8 8 C 1.46905 * 110.99964 * 283.87204 * 7 6 5 9 9 C 1.50697 * 109.47337 * 164.29137 * 8 7 6 10 10 H 1.08005 * 119.99759 * 356.60781 * 9 8 7 11 11 C 1.37873 * 120.00265 * 176.60719 * 9 8 7 12 12 N 1.31512 * 119.99908 * 179.97438 * 11 9 8 13 13 Si 1.86802 * 120.00015 * 359.97438 * 11 9 8 14 14 H 1.48500 * 109.47197 * 270.00456 * 13 11 9 15 15 H 1.48509 * 109.46882 * 30.00125 * 13 11 9 16 16 H 1.48496 * 109.47281 * 149.99774 * 13 11 9 17 17 C 1.46901 * 111.00127 * 159.92262 * 7 6 5 18 18 C 1.53011 * 109.47108 * 53.17947 * 17 7 6 19 19 C 1.52998 * 109.46014 * 164.04883 * 18 17 7 20 20 C 1.52980 * 109.50616 * 315.99174 * 19 18 17 21 21 C 1.53003 * 109.47062 * 112.93640 * 20 19 18 22 22 C 1.53006 * 109.43069 * 284.03787 * 21 20 19 23 23 C 1.52977 * 109.48178 * 75.96266 * 22 21 20 24 24 C 1.53001 * 109.50412 * 247.06028 * 23 22 21 25 25 C 1.38177 * 119.16609 * 359.50602 * 5 4 3 26 26 N 1.31860 * 119.62158 * 179.97438 * 2 1 3 27 27 H 1.09000 * 109.47137 * 270.02046 * 1 2 3 28 28 H 1.08995 * 109.47289 * 30.02734 * 1 2 3 29 29 H 1.09008 * 109.46875 * 150.02345 * 1 2 3 30 30 H 1.08000 * 120.41596 * 359.97438 * 3 2 1 31 31 H 1.07999 * 120.79265 * 180.22706 * 4 3 2 32 32 H 1.09001 * 109.46800 * 149.71845 * 6 5 4 33 33 H 1.08993 * 109.47368 * 29.71791 * 6 5 4 34 34 H 1.09002 * 109.47232 * 44.28911 * 8 7 6 35 35 H 1.09003 * 109.46972 * 284.29340 * 8 7 6 36 36 H 0.97006 * 119.99783 * 179.97438 * 12 11 9 37 37 H 1.08995 * 109.47334 * 173.18464 * 17 7 6 38 38 H 1.08998 * 109.47843 * 284.04550 * 18 17 7 39 39 H 1.08999 * 109.47426 * 44.05453 * 18 17 7 40 40 H 1.09001 * 109.46335 * 195.97894 * 19 18 17 41 41 H 1.09002 * 109.45489 * 75.99246 * 19 18 17 42 42 H 1.09000 * 109.47753 * 352.93252 * 20 19 18 43 43 H 1.09010 * 109.46837 * 232.93213 * 20 19 18 44 44 H 1.09004 * 109.47900 * 164.05042 * 21 20 19 45 45 H 1.09001 * 109.48785 * 44.03207 * 21 20 19 46 46 H 1.08995 * 109.46740 * 315.95502 * 22 21 20 47 47 H 1.09003 * 109.46200 * 195.96591 * 22 21 20 48 48 H 1.09009 * 109.46608 * 127.05417 * 23 22 21 49 49 H 1.09001 * 109.47401 * 7.07799 * 23 22 21 50 50 H 1.08995 * 109.47357 * 284.01827 * 24 23 22 51 51 H 1.09004 * 109.47563 * 164.01074 * 24 23 22 52 52 H 1.07998 * 119.62034 * 180.25450 * 25 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1901 1.2017 0.0000 4 6 3.5764 1.1906 0.0053 5 6 4.2266 -0.0342 0.0004 6 6 5.7322 -0.0987 0.0010 7 7 6.2219 -0.1204 -1.3839 8 6 6.0307 -1.4453 -1.9891 9 6 6.1742 -1.3395 -3.4855 10 1 6.3317 -0.3753 -3.9460 11 6 6.1045 -2.4734 -4.2667 12 7 6.2292 -2.3809 -5.5726 13 14 5.8328 -4.1411 -3.4701 14 1 7.1456 -4.7510 -3.1386 15 1 5.0374 -3.9724 -2.2274 16 1 5.0995 -5.0254 -4.4110 17 6 7.6307 0.2904 -1.4506 18 6 8.4564 -0.5600 -0.4830 19 6 9.9415 -0.4246 -0.8252 20 6 10.1268 -0.5162 -2.3410 21 6 10.6009 0.8353 -2.8794 22 6 9.4213 1.8090 -2.9205 23 6 9.1149 2.2993 -1.5043 24 6 7.7506 1.7657 -1.0629 25 6 3.4767 -1.1947 0.0009 26 7 2.1587 -1.1463 0.0005 27 1 -0.3633 0.0004 1.0277 28 1 -0.3633 0.8897 -0.5142 29 1 -0.3633 -0.8903 -0.5135 30 1 1.6507 2.1373 -0.0004 31 1 4.1366 2.1139 0.0092 32 1 6.0569 -1.0031 0.5155 33 1 6.1332 0.7752 0.5144 34 1 5.0352 -1.8161 -1.7449 35 1 6.7805 -2.1341 -1.6000 36 1 6.1805 -3.1787 -6.1222 37 1 8.0024 0.1502 -2.4656 38 1 8.2862 -0.2178 0.5378 39 1 8.1571 -1.6044 -0.5708 40 1 10.5001 -1.2262 -0.3419 41 1 10.3091 0.5388 -0.4719 42 1 9.1779 -0.7806 -2.8078 43 1 10.8700 -1.2798 -2.5707 44 1 11.0007 0.7059 -3.8852 45 1 11.3785 1.2337 -2.2277 46 1 8.5461 1.3023 -3.3270 47 1 9.6748 2.6599 -3.5528 48 1 9.0997 3.3892 -1.4925 49 1 9.8841 1.9396 -0.8208 50 1 6.9615 2.3356 -1.5534 51 1 7.6533 1.8663 0.0181 52 1 3.9755 -2.1526 0.0012 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001139931157.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:54:53 Heat of formation + Delta-G solvation = 15.625799 kcal Electronic energy + Delta-G solvation = -28287.466185 eV Core-core repulsion = 24864.775807 eV Total energy + Delta-G solvation = -3422.690378 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.40552 -40.62887 -37.60835 -34.86742 -34.18822 -33.63895 -33.17795 -32.38280 -30.30024 -28.79021 -26.82712 -26.47910 -25.50150 -24.27219 -23.15159 -22.72815 -21.81159 -21.40417 -19.61508 -18.85029 -17.63460 -17.26283 -17.03056 -16.67539 -16.30603 -15.78244 -15.51770 -15.14017 -15.07971 -14.99428 -14.87250 -14.53226 -14.39020 -14.06199 -13.99567 -13.69744 -13.38627 -13.36755 -13.25556 -12.98261 -12.68320 -12.64393 -12.60234 -12.41088 -12.21141 -12.00501 -11.89605 -11.83520 -11.64729 -11.54232 -11.35816 -11.17245 -10.78589 -10.71046 -10.55853 -10.47626 -10.33253 -9.65884 -8.85412 -8.27972 -6.26935 0.21041 0.43606 1.25941 1.29862 1.38261 2.30541 2.79362 3.06786 3.41080 3.45976 3.77389 3.89234 3.91139 4.02945 4.06040 4.11165 4.18712 4.23396 4.33128 4.39468 4.43698 4.44348 4.50757 4.52737 4.65300 4.71816 4.75642 4.80921 4.83097 4.87086 4.91247 4.93316 5.04383 5.06589 5.10465 5.13785 5.20505 5.24251 5.25404 5.27501 5.34258 5.35275 5.41589 5.45144 5.51292 5.57443 5.61767 5.77299 5.81823 5.87995 6.09172 6.53252 6.70898 6.79103 7.09887 7.35467 8.88683 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.010388 B = 0.005400 C = 0.004035 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2694.867785 B = 5184.411324 C = 6936.940389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C 0.098 3.902 3 C -0.170 4.170 4 C -0.059 4.059 5 C -0.130 4.130 6 C 0.096 3.904 7 N -0.528 5.528 8 C 0.172 3.828 9 C -0.494 4.494 10 H 0.038 0.962 11 C 0.015 3.985 12 N -0.945 5.945 13 Si 0.927 3.073 14 H -0.266 1.266 15 H -0.256 1.256 16 H -0.285 1.285 17 C 0.068 3.932 18 C -0.145 4.145 19 C -0.110 4.110 20 C -0.137 4.137 21 C -0.108 4.108 22 C -0.132 4.132 23 C -0.114 4.114 24 C -0.102 4.102 25 C 0.088 3.912 26 N -0.518 5.518 27 H 0.091 0.909 28 H 0.096 0.904 29 H 0.063 0.937 30 H 0.166 0.834 31 H 0.155 0.845 32 H 0.037 0.963 33 H 0.104 0.896 34 H 0.019 0.981 35 H -0.012 1.012 36 H 0.263 0.737 37 H 0.094 0.906 38 H 0.075 0.925 39 H 0.035 0.965 40 H 0.060 0.940 41 H 0.092 0.908 42 H 0.047 0.953 43 H 0.052 0.948 44 H 0.049 0.951 45 H 0.083 0.917 46 H 0.045 0.955 47 H 0.062 0.938 48 H 0.073 0.927 49 H 0.084 0.916 50 H 0.054 0.946 51 H 0.074 0.926 52 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.423 10.435 15.570 18.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.040 4.040 3 C -0.189 4.189 4 C -0.085 4.085 5 C -0.132 4.132 6 C -0.032 4.032 7 N -0.250 5.250 8 C 0.044 3.956 9 C -0.533 4.533 10 H 0.056 0.944 11 C -0.183 4.183 12 N -0.587 5.587 13 Si 0.752 3.248 14 H -0.192 1.192 15 H -0.181 1.181 16 H -0.211 1.211 17 C -0.039 4.039 18 C -0.184 4.184 19 C -0.148 4.148 20 C -0.175 4.175 21 C -0.146 4.146 22 C -0.170 4.170 23 C -0.151 4.151 24 C -0.140 4.140 25 C -0.069 4.069 26 N -0.228 5.228 27 H 0.110 0.890 28 H 0.115 0.885 29 H 0.082 0.918 30 H 0.184 0.816 31 H 0.173 0.827 32 H 0.055 0.945 33 H 0.122 0.878 34 H 0.037 0.963 35 H 0.006 0.994 36 H 0.072 0.928 37 H 0.112 0.888 38 H 0.094 0.906 39 H 0.054 0.946 40 H 0.079 0.921 41 H 0.111 0.889 42 H 0.066 0.934 43 H 0.071 0.929 44 H 0.068 0.932 45 H 0.102 0.898 46 H 0.063 0.937 47 H 0.080 0.920 48 H 0.091 0.909 49 H 0.102 0.898 50 H 0.073 0.927 51 H 0.093 0.907 52 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 0.658 9.887 15.143 18.097 hybrid contribution 0.694 -1.385 -0.271 1.573 sum 1.352 8.502 14.872 17.184 Atomic orbital electron populations 1.20751 0.86828 1.03929 1.03914 1.21901 0.98583 0.88462 0.95086 1.22274 0.94773 0.99903 1.01981 1.21728 0.94716 0.97965 0.94095 1.20915 0.97435 0.94332 1.00540 1.21006 0.89651 1.01853 0.90644 1.62121 1.19302 1.28099 1.15451 1.19946 0.94784 0.87305 0.93516 1.21153 1.47243 0.93715 0.91189 0.94372 1.25635 0.95137 1.02410 0.95075 1.70032 1.52926 1.30208 1.05501 0.86007 0.79089 0.80503 0.79198 1.19154 1.18053 1.21068 1.22352 0.85674 0.94892 1.01022 1.22255 0.96778 0.99450 0.99957 1.21724 0.95212 1.02936 0.94925 1.21851 1.00763 0.97839 0.96997 1.21627 0.97645 0.94595 1.00696 1.21812 0.98254 0.98769 0.98137 1.21774 0.96994 1.00476 0.95870 1.21617 0.97683 0.93871 1.00844 1.22559 0.89632 0.98342 0.96331 1.67456 1.10080 1.31230 1.14077 0.89012 0.88538 0.91753 0.81610 0.82691 0.94524 0.87830 0.96311 0.99423 0.92759 0.88836 0.90628 0.94593 0.92146 0.88949 0.93412 0.92941 0.93244 0.89809 0.93671 0.91955 0.90868 0.89759 0.92749 0.90745 0.84789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.99 10.17 71.24 0.72 -1.26 16 2 C 0.10 2.83 6.78 42.55 0.29 3.11 16 3 C -0.17 -4.25 9.74 22.36 0.22 -4.03 16 4 C -0.06 -1.61 9.86 22.47 0.22 -1.39 16 5 C -0.13 -4.23 5.18 -19.77 -0.10 -4.34 16 6 C 0.10 3.02 3.88 85.56 0.33 3.35 16 7 N -0.53 -20.57 4.31 -880.02 -3.80 -24.36 16 8 C 0.17 8.21 3.51 85.56 0.30 8.51 16 9 C -0.49 -28.62 8.95 25.60 0.23 -28.39 16 10 H 0.04 2.47 7.92 -2.91 -0.02 2.45 16 11 C 0.01 0.86 5.47 84.65 0.46 1.33 16 12 N -0.95 -59.97 13.96 21.45 0.30 -59.67 16 13 Si 0.93 45.92 27.40 68.60 1.88 47.80 16 14 H -0.27 -12.61 7.11 99.48 0.71 -11.91 16 15 H -0.26 -12.16 6.64 99.48 0.66 -11.50 16 16 H -0.28 -13.97 7.11 99.48 0.71 -13.26 16 17 C 0.07 2.31 1.49 44.92 0.07 2.37 16 18 C -0.15 -4.33 4.04 30.60 0.12 -4.20 16 19 C -0.11 -2.84 5.48 30.59 0.17 -2.67 16 20 C -0.14 -4.24 5.47 30.59 0.17 -4.07 16 21 C -0.11 -2.85 5.59 30.60 0.17 -2.68 16 22 C -0.13 -3.69 5.47 30.59 0.17 -3.53 16 23 C -0.11 -2.56 5.48 30.59 0.17 -2.39 16 24 C -0.10 -2.70 4.59 30.60 0.14 -2.56 16 25 C 0.09 3.21 9.48 84.67 0.80 4.02 16 26 N -0.52 -18.64 10.27 -183.89 -1.89 -20.52 16 27 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 28 H 0.10 1.48 8.08 -2.39 -0.02 1.46 16 29 H 0.06 1.45 8.14 -2.38 -0.02 1.43 16 30 H 0.17 2.81 8.06 -2.91 -0.02 2.79 16 31 H 0.16 3.37 8.06 -2.91 -0.02 3.35 16 32 H 0.04 1.15 7.56 -2.39 -0.02 1.13 16 33 H 0.10 2.61 6.16 -2.39 -0.01 2.60 16 34 H 0.02 0.94 4.91 -2.39 -0.01 0.93 16 35 H -0.01 -0.56 5.39 -2.39 -0.01 -0.57 16 36 H 0.26 15.74 8.31 -92.70 -0.77 14.97 16 37 H 0.09 3.87 1.84 -2.39 0.00 3.87 16 38 H 0.08 1.87 7.35 -2.39 -0.02 1.85 16 39 H 0.04 1.26 6.16 -2.39 -0.01 1.24 16 40 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 41 H 0.09 1.93 4.69 -2.39 -0.01 1.91 16 42 H 0.05 1.94 5.47 -2.39 -0.01 1.92 16 43 H 0.05 1.57 8.14 -2.38 -0.02 1.55 16 44 H 0.05 1.34 8.14 -2.38 -0.02 1.32 16 45 H 0.08 1.74 7.47 -2.39 -0.02 1.72 16 46 H 0.04 1.66 5.47 -2.39 -0.01 1.65 16 47 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 48 H 0.07 1.40 8.14 -2.38 -0.02 1.38 16 49 H 0.08 1.63 4.69 -2.39 -0.01 1.62 16 50 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 51 H 0.07 1.60 6.66 -2.39 -0.02 1.59 16 52 H 0.13 5.03 7.47 -2.91 -0.02 5.01 16 Total: -1.00 -71.04 374.30 2.00 -69.03 By element: Atomic # 1 Polarization: 25.68 SS G_CDS: 0.86 Total: 26.55 kcal Atomic # 6 Polarization: -43.47 SS G_CDS: 4.65 Total: -38.82 kcal Atomic # 7 Polarization: -99.17 SS G_CDS: -5.39 Total: -104.56 kcal Atomic # 14 Polarization: 45.92 SS G_CDS: 1.88 Total: 47.80 kcal Total: -71.04 2.00 -69.03 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001139931157.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.659 kcal (2) G-P(sol) polarization free energy of solvation -71.037 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.033 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds