Wall clock time and date at job start Tue Mar 31 2020 10:56:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38670 * 120.79403 * 2 1 4 4 C 1.38177 * 119.16539 * 180.31497 * 3 2 1 5 5 N 1.31889 * 120.76724 * 359.66270 * 4 3 2 6 6 C 1.31852 * 121.72158 * 0.02562 * 5 4 3 7 7 C 1.38224 * 120.76449 * 0.02627 * 6 5 4 8 8 C 1.50704 * 120.41998 * 179.97438 * 7 6 5 9 9 N 1.46903 * 109.47189 * 106.00776 * 8 7 6 10 10 C 1.46899 * 110.99919 * 294.61412 * 9 8 7 11 11 C 1.50695 * 109.47419 * 294.06721 * 10 9 8 12 12 H 1.07996 * 120.00379 * 5.10053 * 11 10 9 13 13 C 1.37877 * 120.00072 * 185.10056 * 11 10 9 14 14 N 1.31509 * 120.00254 * 180.02562 * 13 11 10 15 15 Si 1.86804 * 119.99843 * 0.02562 * 13 11 10 16 16 H 1.48503 * 109.47316 * 90.00002 * 15 13 11 17 17 H 1.48504 * 109.47009 * 209.99903 * 15 13 11 18 18 H 1.48502 * 109.46982 * 329.99716 * 15 13 11 19 19 C 1.46898 * 110.99569 * 170.66651 * 9 8 7 20 20 C 1.53016 * 109.47088 * 295.45626 * 19 9 8 21 21 C 1.52989 * 109.46029 * 164.05045 * 20 19 9 22 22 C 1.52982 * 109.50971 * 315.98702 * 21 20 19 23 23 C 1.53013 * 109.46957 * 112.93786 * 22 21 20 24 24 C 1.53001 * 109.43010 * 284.04069 * 23 22 21 25 25 C 1.52987 * 109.48349 * 75.96244 * 24 23 22 26 26 C 1.52996 * 109.50848 * 247.06243 * 25 24 23 27 27 H 1.09003 * 109.47094 * 274.94375 * 1 2 3 28 28 H 1.09009 * 109.46886 * 34.93852 * 1 2 3 29 29 H 1.08997 * 109.47351 * 154.94033 * 1 2 3 30 30 H 1.08008 * 120.41641 * 0.02791 * 3 2 1 31 31 H 1.08004 * 119.62336 * 179.68635 * 4 3 2 32 32 H 1.08000 * 119.61725 * 179.97438 * 6 5 4 33 33 H 1.09000 * 109.46815 * 346.00754 * 8 7 6 34 34 H 1.09003 * 109.46908 * 226.00741 * 8 7 6 35 35 H 1.09001 * 109.46990 * 54.07041 * 10 9 8 36 36 H 1.09000 * 109.46715 * 174.06718 * 10 9 8 37 37 H 0.97003 * 119.99970 * 180.02562 * 14 13 11 38 38 H 1.09002 * 109.47909 * 55.45596 * 19 9 8 39 39 H 1.09005 * 109.47129 * 284.04352 * 20 19 9 40 40 H 1.08996 * 109.47429 * 44.05319 * 20 19 9 41 41 H 1.09004 * 109.46745 * 195.97295 * 21 20 19 42 42 H 1.09004 * 109.46170 * 75.99581 * 21 20 19 43 43 H 1.08990 * 109.47204 * 352.93788 * 22 21 20 44 44 H 1.09004 * 109.46985 * 232.93638 * 22 21 20 45 45 H 1.09001 * 109.47814 * 164.05289 * 23 22 21 46 46 H 1.08996 * 109.48266 * 44.03387 * 23 22 21 47 47 H 1.08995 * 109.47315 * 315.95817 * 24 23 22 48 48 H 1.08999 * 109.46329 * 195.96382 * 24 23 22 49 49 H 1.09006 * 109.46685 * 127.05301 * 25 24 23 50 50 H 1.08997 * 109.46887 * 7.07414 * 25 24 23 51 51 H 1.08996 * 109.47346 * 284.01995 * 26 25 24 52 52 H 1.09000 * 109.47618 * 164.01033 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2169 1.1912 0.0000 4 6 3.5981 1.1519 -0.0066 5 7 4.2403 0.0000 -0.0062 6 6 3.5983 -1.1517 -0.0001 7 6 2.2166 -1.1909 0.0057 8 6 1.4907 -2.5116 0.0122 9 7 0.9256 -2.7532 1.3465 10 6 1.9889 -2.9185 2.3464 11 6 2.7659 -4.1753 2.0506 12 1 2.5511 -4.7458 1.1591 13 6 3.7512 -4.5970 2.9180 14 7 4.4297 -5.6935 2.6595 15 14 4.1225 -3.6106 4.4603 16 1 3.2757 -4.1010 5.5773 17 1 5.5549 -3.7712 4.8177 18 1 3.8321 -2.1756 4.2120 19 6 0.0282 -3.9162 1.3352 20 6 -1.1782 -3.6209 0.4416 21 6 -1.8972 -4.9292 0.1070 22 6 -0.8666 -6.0002 -0.2553 23 6 -0.8678 -7.0924 0.8163 24 6 -0.1395 -6.5840 2.0620 25 6 -1.0451 -5.6130 2.8220 26 6 -0.4506 -4.2047 2.7596 27 1 -0.3633 0.0886 1.0239 28 1 -0.3633 0.8425 -0.5886 29 1 -0.3634 -0.9309 -0.4353 30 1 1.6967 2.1378 0.0005 31 1 4.1584 2.0752 -0.0118 32 1 4.1585 -2.0750 -0.0004 33 1 2.1886 -3.3109 -0.2371 34 1 0.6872 -2.4881 -0.7239 35 1 2.6592 -2.0597 2.3094 36 1 1.5456 -2.9907 3.3396 37 1 5.1226 -5.9903 3.2700 38 1 0.5627 -4.7840 0.9488 39 1 -1.8631 -2.9534 0.9646 40 1 -0.8406 -3.1460 -0.4796 41 1 -2.5676 -4.7697 -0.7375 42 1 -2.4740 -5.2580 0.9715 43 1 0.1232 -5.5477 -0.3117 44 1 -1.1216 -6.4379 -1.2205 45 1 -0.3593 -7.9775 0.4338 46 1 -1.8956 -7.3470 1.0747 47 1 0.7747 -6.0706 1.7643 48 1 0.1107 -7.4271 2.7060 49 1 -1.1237 -5.9283 3.8625 50 1 -2.0360 -5.6094 2.3678 51 1 0.3922 -4.1353 3.4473 52 1 -1.2109 -3.4764 3.0419 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001141036160.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:56:25 Heat of formation + Delta-G solvation = 38.140443 kcal Electronic energy + Delta-G solvation = -29041.743617 eV Core-core repulsion = 25620.029547 eV Total energy + Delta-G solvation = -3421.714070 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.11898 -39.25572 -36.13072 -33.68228 -32.66612 -32.30054 -31.89076 -30.45166 -27.92982 -27.53058 -25.95350 -25.28275 -24.05465 -22.40196 -21.90660 -21.18918 -20.14524 -20.02481 -18.32313 -16.85889 -16.28467 -16.02230 -15.91067 -15.00516 -14.69402 -14.39995 -14.09351 -13.92758 -13.68638 -13.45065 -13.44172 -13.00084 -12.93672 -12.58452 -12.46681 -12.28272 -12.17775 -11.96565 -11.87208 -11.57996 -11.18315 -11.13225 -10.95325 -10.80827 -10.67819 -10.56344 -10.40570 -10.38886 -10.07172 -10.01289 -9.89081 -9.56452 -9.36842 -9.11371 -8.98759 -8.95521 -8.58354 -8.46579 -7.12558 -6.12074 -4.10729 1.55910 1.69967 3.26226 3.35568 3.40752 4.19429 4.39284 4.80825 4.91251 5.03032 5.06733 5.16903 5.19848 5.23935 5.32008 5.37881 5.50050 5.52808 5.55256 5.66151 5.70480 5.74443 5.76771 5.88505 5.89248 5.97693 6.02120 6.06867 6.19077 6.21974 6.24576 6.34568 6.35975 6.39776 6.40184 6.47896 6.48449 6.53221 6.57187 6.64081 6.73801 6.77445 6.85778 6.93904 6.94517 6.98492 7.19913 7.21149 7.27141 7.57076 8.04016 8.11430 8.42172 8.43903 8.89036 9.52450 11.00162 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.010259 B = 0.006580 C = 0.004595 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2728.542752 B = 4254.470946 C = 6092.322662 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.028 4.028 3 C -0.187 4.187 4 C 0.085 3.915 5 N -0.495 5.495 6 C 0.119 3.881 7 C -0.110 4.110 8 C 0.096 3.904 9 N -0.525 5.525 10 C 0.151 3.849 11 C -0.543 4.543 12 H 0.075 0.925 13 C 0.080 3.920 14 N -0.894 5.894 15 Si 0.867 3.133 16 H -0.277 1.277 17 H -0.288 1.288 18 H -0.266 1.266 19 C 0.077 3.923 20 C -0.115 4.115 21 C -0.124 4.124 22 C -0.129 4.129 23 C -0.114 4.114 24 C -0.136 4.136 25 C -0.118 4.118 26 C -0.112 4.112 27 H 0.077 0.923 28 H 0.056 0.944 29 H 0.073 0.927 30 H 0.125 0.875 31 H 0.145 0.855 32 H 0.159 0.841 33 H 0.056 0.944 34 H 0.071 0.929 35 H 0.024 0.976 36 H 0.029 0.971 37 H 0.263 0.737 38 H 0.082 0.918 39 H 0.058 0.942 40 H 0.057 0.943 41 H 0.050 0.950 42 H 0.071 0.929 43 H 0.077 0.923 44 H 0.049 0.951 45 H 0.053 0.947 46 H 0.053 0.947 47 H 0.099 0.901 48 H 0.050 0.950 49 H 0.049 0.951 50 H 0.061 0.939 51 H 0.079 0.921 52 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.711 5.918 -5.373 14.179 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.037 4.037 3 C -0.207 4.207 4 C -0.072 4.072 5 N -0.204 5.204 6 C -0.039 4.039 7 C -0.112 4.112 8 C -0.033 4.033 9 N -0.248 5.248 10 C 0.024 3.976 11 C -0.581 4.581 12 H 0.093 0.907 13 C -0.124 4.124 14 N -0.532 5.532 15 Si 0.695 3.305 16 H -0.203 1.203 17 H -0.214 1.214 18 H -0.190 1.190 19 C -0.031 4.031 20 C -0.152 4.152 21 C -0.162 4.162 22 C -0.166 4.166 23 C -0.151 4.151 24 C -0.173 4.173 25 C -0.155 4.155 26 C -0.150 4.150 27 H 0.096 0.904 28 H 0.075 0.925 29 H 0.092 0.908 30 H 0.143 0.857 31 H 0.163 0.837 32 H 0.176 0.824 33 H 0.074 0.926 34 H 0.089 0.911 35 H 0.042 0.958 36 H 0.047 0.953 37 H 0.072 0.928 38 H 0.099 0.901 39 H 0.077 0.923 40 H 0.076 0.924 41 H 0.069 0.931 42 H 0.089 0.911 43 H 0.095 0.905 44 H 0.068 0.932 45 H 0.072 0.928 46 H 0.072 0.928 47 H 0.117 0.883 48 H 0.069 0.931 49 H 0.067 0.933 50 H 0.080 0.920 51 H 0.098 0.902 52 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -10.934 6.220 -5.170 13.600 hybrid contribution 0.021 -0.247 0.867 0.902 sum -10.913 5.973 -4.303 13.164 Atomic orbital electron populations 1.20733 0.90487 1.02266 1.02731 1.20142 0.96696 0.92260 0.94568 1.21895 0.95583 0.98287 1.04903 1.22583 0.91737 0.96157 0.96704 1.67691 1.41314 0.98507 1.12860 1.22883 0.91616 0.96054 0.93308 1.20754 0.94712 0.95799 0.99974 1.20875 0.97123 0.92516 0.92741 1.62460 1.19286 1.38614 1.04436 1.20239 0.89249 0.96522 0.91541 1.21536 1.18452 1.08491 1.09664 0.90687 1.24858 0.95539 0.94428 0.97526 1.69902 1.23333 1.22618 1.37385 0.86968 0.77674 0.81592 0.84268 1.20311 1.21377 1.19038 1.21978 0.92266 0.93632 0.95210 1.21771 0.97476 0.96491 0.99493 1.21831 0.97889 0.95649 1.00784 1.21821 1.00657 0.96410 0.97697 1.21657 0.99722 0.97563 0.96166 1.21899 1.00629 0.98856 0.95891 1.21757 0.98806 0.95658 0.99313 1.21706 1.00601 0.95178 0.97493 0.90391 0.92548 0.90774 0.85729 0.83725 0.82395 0.92622 0.91066 0.95781 0.95318 0.92756 0.90126 0.92300 0.92404 0.93130 0.91116 0.90500 0.93195 0.92844 0.92813 0.88260 0.93139 0.93253 0.92026 0.90208 0.93176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.32 9.67 36.00 0.35 -0.98 16 2 C -0.03 -0.43 5.92 -104.32 -0.62 -1.05 16 3 C -0.19 -2.63 9.84 -39.44 -0.39 -3.02 16 4 C 0.08 1.30 11.18 -17.55 -0.20 1.10 16 5 N -0.49 -9.13 10.36 -13.25 -0.14 -9.26 16 6 C 0.12 2.24 10.19 -17.55 -0.18 2.06 16 7 C -0.11 -1.91 4.38 -104.48 -0.46 -2.37 16 8 C 0.10 1.66 4.08 -4.97 -0.02 1.64 16 9 N -0.52 -9.62 4.49 -229.50 -1.03 -10.65 16 10 C 0.15 3.36 3.48 -4.98 -0.02 3.34 16 11 C -0.54 -13.63 7.53 -34.44 -0.26 -13.89 16 12 H 0.08 2.03 5.90 -52.49 -0.31 1.72 16 13 C 0.08 2.15 5.47 -17.82 -0.10 2.06 16 14 N -0.89 -25.82 13.96 55.43 0.77 -25.05 16 15 Si 0.87 21.21 27.37 -169.99 -4.65 16.56 16 16 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 17 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 18 H -0.27 -6.48 6.69 56.52 0.38 -6.10 16 19 C 0.08 1.28 0.85 -67.70 -0.06 1.23 16 20 C -0.11 -1.58 5.19 -26.73 -0.14 -1.72 16 21 C -0.12 -1.55 5.48 -26.75 -0.15 -1.70 16 22 C -0.13 -1.75 5.47 -26.73 -0.15 -1.90 16 23 C -0.11 -1.59 5.59 -26.72 -0.15 -1.74 16 24 C -0.14 -2.25 5.47 -26.74 -0.15 -2.39 16 25 C -0.12 -1.80 5.48 -26.74 -0.15 -1.95 16 26 C -0.11 -1.91 4.94 -26.73 -0.13 -2.04 16 27 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 28 H 0.06 0.58 8.13 -51.92 -0.42 0.16 16 29 H 0.07 0.93 5.84 -51.93 -0.30 0.63 16 30 H 0.12 1.37 8.06 -52.48 -0.42 0.95 16 31 H 0.15 1.75 8.06 -52.48 -0.42 1.33 16 32 H 0.16 3.14 8.00 -52.49 -0.42 2.72 16 33 H 0.06 1.10 6.44 -51.93 -0.33 0.76 16 34 H 0.07 1.09 4.54 -51.93 -0.24 0.85 16 35 H 0.02 0.58 6.00 -51.93 -0.31 0.27 16 36 H 0.03 0.67 5.13 -51.93 -0.27 0.40 16 37 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 38 H 0.08 1.52 1.50 -51.93 -0.08 1.44 16 39 H 0.06 0.79 7.82 -51.93 -0.41 0.38 16 40 H 0.06 0.78 5.38 -51.93 -0.28 0.50 16 41 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 42 H 0.07 0.87 4.69 -51.93 -0.24 0.63 16 43 H 0.08 1.22 5.47 -51.93 -0.28 0.93 16 44 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 45 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 46 H 0.05 0.68 7.47 -51.93 -0.39 0.29 16 47 H 0.10 2.00 4.73 -51.93 -0.25 1.76 16 48 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 49 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 50 H 0.06 0.83 4.69 -51.93 -0.24 0.59 16 51 H 0.08 1.60 5.38 -51.93 -0.28 1.32 16 52 H 0.05 0.79 7.82 -51.93 -0.41 0.39 16 LS Contribution 365.52 15.07 5.51 5.51 Total: -1.00 -27.88 365.52 -10.48 -38.37 By element: Atomic # 1 Polarization: 15.84 SS G_CDS: -8.00 Total: 7.84 kcal Atomic # 6 Polarization: -20.36 SS G_CDS: -2.95 Total: -23.31 kcal Atomic # 7 Polarization: -44.57 SS G_CDS: -0.39 Total: -44.97 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -4.65 Total: 16.56 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -27.88 -10.48 -38.37 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001141036160.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.507 kcal (2) G-P(sol) polarization free energy of solvation -27.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.624 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.367 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.140 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds