Wall clock time and date at job start Tue Mar 31 2020 10:56:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38670 * 120.79403 * 2 1 4 4 C 1.38177 * 119.16539 * 180.31497 * 3 2 1 5 5 N 1.31889 * 120.76724 * 359.66270 * 4 3 2 6 6 C 1.31852 * 121.72158 * 0.02562 * 5 4 3 7 7 C 1.38224 * 120.76449 * 0.02627 * 6 5 4 8 8 C 1.50704 * 120.41998 * 179.97438 * 7 6 5 9 9 N 1.46903 * 109.47189 * 106.00776 * 8 7 6 10 10 C 1.46899 * 110.99919 * 294.61412 * 9 8 7 11 11 C 1.50695 * 109.47419 * 294.06721 * 10 9 8 12 12 H 1.07996 * 120.00379 * 5.10053 * 11 10 9 13 13 C 1.37877 * 120.00072 * 185.10056 * 11 10 9 14 14 N 1.31509 * 120.00254 * 180.02562 * 13 11 10 15 15 Si 1.86804 * 119.99843 * 0.02562 * 13 11 10 16 16 H 1.48503 * 109.47316 * 90.00002 * 15 13 11 17 17 H 1.48504 * 109.47009 * 209.99903 * 15 13 11 18 18 H 1.48502 * 109.46982 * 329.99716 * 15 13 11 19 19 C 1.46898 * 110.99569 * 170.66651 * 9 8 7 20 20 C 1.53016 * 109.47088 * 295.45626 * 19 9 8 21 21 C 1.52989 * 109.46029 * 164.05045 * 20 19 9 22 22 C 1.52982 * 109.50971 * 315.98702 * 21 20 19 23 23 C 1.53013 * 109.46957 * 112.93786 * 22 21 20 24 24 C 1.53001 * 109.43010 * 284.04069 * 23 22 21 25 25 C 1.52987 * 109.48349 * 75.96244 * 24 23 22 26 26 C 1.52996 * 109.50848 * 247.06243 * 25 24 23 27 27 H 1.09003 * 109.47094 * 274.94375 * 1 2 3 28 28 H 1.09009 * 109.46886 * 34.93852 * 1 2 3 29 29 H 1.08997 * 109.47351 * 154.94033 * 1 2 3 30 30 H 1.08008 * 120.41641 * 0.02791 * 3 2 1 31 31 H 1.08004 * 119.62336 * 179.68635 * 4 3 2 32 32 H 1.08000 * 119.61725 * 179.97438 * 6 5 4 33 33 H 1.09000 * 109.46815 * 346.00754 * 8 7 6 34 34 H 1.09003 * 109.46908 * 226.00741 * 8 7 6 35 35 H 1.09001 * 109.46990 * 54.07041 * 10 9 8 36 36 H 1.09000 * 109.46715 * 174.06718 * 10 9 8 37 37 H 0.97003 * 119.99970 * 180.02562 * 14 13 11 38 38 H 1.09002 * 109.47909 * 55.45596 * 19 9 8 39 39 H 1.09005 * 109.47129 * 284.04352 * 20 19 9 40 40 H 1.08996 * 109.47429 * 44.05319 * 20 19 9 41 41 H 1.09004 * 109.46745 * 195.97295 * 21 20 19 42 42 H 1.09004 * 109.46170 * 75.99581 * 21 20 19 43 43 H 1.08990 * 109.47204 * 352.93788 * 22 21 20 44 44 H 1.09004 * 109.46985 * 232.93638 * 22 21 20 45 45 H 1.09001 * 109.47814 * 164.05289 * 23 22 21 46 46 H 1.08996 * 109.48266 * 44.03387 * 23 22 21 47 47 H 1.08995 * 109.47315 * 315.95817 * 24 23 22 48 48 H 1.08999 * 109.46329 * 195.96382 * 24 23 22 49 49 H 1.09006 * 109.46685 * 127.05301 * 25 24 23 50 50 H 1.08997 * 109.46887 * 7.07414 * 25 24 23 51 51 H 1.08996 * 109.47346 * 284.01995 * 26 25 24 52 52 H 1.09000 * 109.47618 * 164.01033 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2169 1.1912 0.0000 4 6 3.5981 1.1519 -0.0066 5 7 4.2403 0.0000 -0.0062 6 6 3.5983 -1.1517 -0.0001 7 6 2.2166 -1.1909 0.0057 8 6 1.4907 -2.5116 0.0122 9 7 0.9256 -2.7532 1.3465 10 6 1.9889 -2.9185 2.3464 11 6 2.7659 -4.1753 2.0506 12 1 2.5511 -4.7458 1.1591 13 6 3.7512 -4.5970 2.9180 14 7 4.4297 -5.6935 2.6595 15 14 4.1225 -3.6106 4.4603 16 1 3.2757 -4.1010 5.5773 17 1 5.5549 -3.7712 4.8177 18 1 3.8321 -2.1756 4.2120 19 6 0.0282 -3.9162 1.3352 20 6 -1.1782 -3.6209 0.4416 21 6 -1.8972 -4.9292 0.1070 22 6 -0.8666 -6.0002 -0.2553 23 6 -0.8678 -7.0924 0.8163 24 6 -0.1395 -6.5840 2.0620 25 6 -1.0451 -5.6130 2.8220 26 6 -0.4506 -4.2047 2.7596 27 1 -0.3633 0.0886 1.0239 28 1 -0.3633 0.8425 -0.5886 29 1 -0.3634 -0.9309 -0.4353 30 1 1.6967 2.1378 0.0005 31 1 4.1584 2.0752 -0.0118 32 1 4.1585 -2.0750 -0.0004 33 1 2.1886 -3.3109 -0.2371 34 1 0.6872 -2.4881 -0.7239 35 1 2.6592 -2.0597 2.3094 36 1 1.5456 -2.9907 3.3396 37 1 5.1226 -5.9903 3.2700 38 1 0.5627 -4.7840 0.9488 39 1 -1.8631 -2.9534 0.9646 40 1 -0.8406 -3.1460 -0.4796 41 1 -2.5676 -4.7697 -0.7375 42 1 -2.4740 -5.2580 0.9715 43 1 0.1232 -5.5477 -0.3117 44 1 -1.1216 -6.4379 -1.2205 45 1 -0.3593 -7.9775 0.4338 46 1 -1.8956 -7.3470 1.0747 47 1 0.7747 -6.0706 1.7643 48 1 0.1107 -7.4271 2.7060 49 1 -1.1237 -5.9283 3.8625 50 1 -2.0360 -5.6094 2.3678 51 1 0.3922 -4.1353 3.4473 52 1 -1.2109 -3.4764 3.0419 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001141036160.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:56:24 Heat of formation + Delta-G solvation = 22.649039 kcal Electronic energy + Delta-G solvation = -29042.415375 eV Core-core repulsion = 25620.029547 eV Total energy + Delta-G solvation = -3422.385827 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.43833 -40.53950 -37.56034 -35.05715 -34.42034 -33.63741 -33.18281 -31.87198 -29.61047 -28.69246 -27.27986 -26.60411 -25.59579 -23.82918 -23.23431 -22.48097 -21.55638 -21.27007 -19.79843 -18.74076 -17.66016 -17.35453 -17.17134 -16.48210 -16.24375 -15.81938 -15.62437 -15.27648 -14.92688 -14.80743 -14.66983 -14.46465 -14.34481 -14.13520 -13.65918 -13.55653 -13.41259 -13.25755 -13.23767 -13.10623 -12.77675 -12.56375 -12.47357 -12.21880 -12.06822 -11.96228 -11.81459 -11.74810 -11.71887 -11.48372 -11.34935 -11.11014 -10.78015 -10.73802 -10.34328 -10.26880 -10.17255 -9.79238 -8.74791 -8.27483 -6.26332 0.28337 0.45549 1.25635 1.30616 1.38835 2.31359 2.89143 3.09566 3.39585 3.65015 3.85639 3.93375 3.98499 4.05000 4.09258 4.16316 4.24903 4.30223 4.34569 4.45852 4.49094 4.52819 4.60982 4.68199 4.75676 4.79406 4.90193 4.91158 4.96734 4.99014 5.01271 5.05421 5.11352 5.13121 5.19996 5.20184 5.22428 5.28399 5.32082 5.37673 5.39285 5.42498 5.44336 5.53374 5.58152 5.64654 5.69746 5.78264 5.91031 5.95493 6.20197 6.42883 6.57967 6.79323 7.14431 7.38837 8.88012 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.010259 B = 0.006580 C = 0.004595 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2728.542752 B = 4254.470946 C = 6092.322662 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C -0.030 4.030 3 C -0.174 4.174 4 C 0.079 3.921 5 N -0.525 5.525 6 C 0.091 3.909 7 C -0.125 4.125 8 C 0.106 3.894 9 N -0.512 5.512 10 C 0.166 3.834 11 C -0.515 4.515 12 H 0.045 0.955 13 C 0.025 3.975 14 N -0.940 5.940 15 Si 0.920 3.080 16 H -0.267 1.267 17 H -0.291 1.291 18 H -0.263 1.263 19 C 0.073 3.927 20 C -0.106 4.106 21 C -0.117 4.117 22 C -0.127 4.127 23 C -0.108 4.108 24 C -0.134 4.134 25 C -0.110 4.110 26 C -0.111 4.111 27 H 0.078 0.922 28 H 0.087 0.913 29 H 0.072 0.928 30 H 0.168 0.832 31 H 0.179 0.821 32 H 0.126 0.874 33 H 0.018 0.982 34 H 0.098 0.902 35 H 0.007 0.993 36 H 0.027 0.973 37 H 0.261 0.739 38 H 0.059 0.941 39 H 0.074 0.926 40 H 0.062 0.938 41 H 0.076 0.924 42 H 0.079 0.921 43 H 0.046 0.954 44 H 0.066 0.934 45 H 0.047 0.953 46 H 0.079 0.921 47 H 0.056 0.944 48 H 0.037 0.963 49 H 0.051 0.949 50 H 0.091 0.909 51 H 0.041 0.959 52 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.540 8.551 -5.736 18.641 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.038 4.038 3 C -0.194 4.194 4 C -0.078 4.078 5 N -0.234 5.234 6 C -0.066 4.066 7 C -0.128 4.128 8 C -0.023 4.023 9 N -0.234 5.234 10 C 0.038 3.962 11 C -0.554 4.554 12 H 0.063 0.937 13 C -0.173 4.173 14 N -0.581 5.581 15 Si 0.747 3.253 16 H -0.193 1.193 17 H -0.217 1.217 18 H -0.187 1.187 19 C -0.034 4.034 20 C -0.144 4.144 21 C -0.154 4.154 22 C -0.165 4.165 23 C -0.146 4.146 24 C -0.172 4.172 25 C -0.148 4.148 26 C -0.148 4.148 27 H 0.097 0.903 28 H 0.106 0.894 29 H 0.091 0.909 30 H 0.185 0.815 31 H 0.196 0.804 32 H 0.143 0.857 33 H 0.036 0.964 34 H 0.116 0.884 35 H 0.025 0.975 36 H 0.045 0.955 37 H 0.070 0.930 38 H 0.076 0.924 39 H 0.092 0.908 40 H 0.080 0.920 41 H 0.094 0.906 42 H 0.097 0.903 43 H 0.064 0.936 44 H 0.085 0.915 45 H 0.066 0.934 46 H 0.098 0.902 47 H 0.074 0.926 48 H 0.056 0.944 49 H 0.070 0.930 50 H 0.109 0.891 51 H 0.059 0.941 52 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -14.782 8.854 -5.537 18.098 hybrid contribution 1.218 -1.023 0.885 1.821 sum -13.563 7.831 -4.651 16.338 Atomic orbital electron populations 1.20779 0.88012 1.03669 1.03304 1.20543 0.98439 0.91583 0.93244 1.22336 0.95083 0.99545 1.02387 1.23222 0.93055 0.96043 0.95493 1.67619 1.42471 0.99265 1.14093 1.22541 0.92438 0.95591 0.95987 1.20730 0.94094 0.96714 1.01240 1.20797 0.97063 0.91756 0.92640 1.62489 1.17679 1.39165 1.04100 1.19945 0.89672 0.93846 0.92729 1.21664 1.17446 1.08596 1.07661 0.93725 1.25544 0.96002 0.95359 1.00414 1.70034 1.24665 1.24623 1.38743 0.86112 0.77288 0.80396 0.81541 1.19258 1.21689 1.18719 1.22078 0.93104 0.92227 0.96004 1.21703 0.96048 0.97744 0.98871 1.21801 0.97460 0.94070 1.02111 1.21782 0.99616 0.96697 0.98375 1.21631 1.00567 0.97456 0.94921 1.21820 0.99668 0.98429 0.97249 1.21731 0.99556 0.93982 0.99524 1.21671 0.99719 0.96859 0.96567 0.90306 0.89382 0.90877 0.81468 0.80439 0.85689 0.96385 0.88416 0.97471 0.95525 0.93026 0.92351 0.90761 0.91975 0.90553 0.90303 0.93570 0.91534 0.93397 0.90207 0.92591 0.94392 0.93027 0.89079 0.94060 0.91294 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.13 9.67 71.23 0.69 -1.44 16 2 C -0.03 -0.83 5.92 -19.67 -0.12 -0.95 16 3 C -0.17 -4.29 9.84 22.36 0.22 -4.07 16 4 C 0.08 2.25 11.18 84.67 0.95 3.19 16 5 N -0.52 -19.69 10.36 -195.84 -2.03 -21.72 16 6 C 0.09 3.63 10.19 84.69 0.86 4.50 16 7 C -0.13 -4.41 4.38 -19.77 -0.09 -4.50 16 8 C 0.11 3.77 4.08 85.56 0.35 4.12 16 9 N -0.51 -18.96 4.49 -880.00 -3.95 -22.91 16 10 C 0.17 7.64 3.48 85.56 0.30 7.94 16 11 C -0.51 -27.64 7.53 25.60 0.19 -27.44 16 12 H 0.04 2.65 5.90 -2.91 -0.02 2.63 16 13 C 0.03 1.43 5.47 84.66 0.46 1.90 16 14 N -0.94 -57.72 13.96 21.45 0.30 -57.42 16 15 Si 0.92 45.51 27.37 68.60 1.88 47.39 16 16 H -0.27 -12.69 7.11 99.48 0.71 -11.99 16 17 H -0.29 -14.43 7.11 99.48 0.71 -13.72 16 18 H -0.26 -12.75 6.69 99.48 0.67 -12.08 16 19 C 0.07 2.44 0.85 44.93 0.04 2.48 16 20 C -0.11 -2.63 5.19 30.60 0.16 -2.47 16 21 C -0.12 -2.51 5.48 30.58 0.17 -2.34 16 22 C -0.13 -3.30 5.47 30.59 0.17 -3.13 16 23 C -0.11 -2.93 5.59 30.60 0.17 -2.76 16 24 C -0.13 -4.56 5.47 30.59 0.17 -4.40 16 25 C -0.11 -3.25 5.48 30.59 0.17 -3.08 16 26 C -0.11 -3.69 4.94 30.60 0.15 -3.54 16 27 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 28 H 0.09 1.32 8.13 -2.38 -0.02 1.31 16 29 H 0.07 1.55 5.84 -2.39 -0.01 1.54 16 30 H 0.17 2.71 8.06 -2.91 -0.02 2.68 16 31 H 0.18 3.74 8.06 -2.91 -0.02 3.71 16 32 H 0.13 5.62 8.00 -2.91 -0.02 5.59 16 33 H 0.02 0.77 6.44 -2.39 -0.02 0.76 16 34 H 0.10 2.93 4.54 -2.39 -0.01 2.92 16 35 H 0.01 0.36 6.00 -2.39 -0.01 0.35 16 36 H 0.03 1.26 5.13 -2.39 -0.01 1.25 16 37 H 0.26 15.32 8.31 -92.71 -0.77 14.55 16 38 H 0.06 2.31 1.50 -2.39 0.00 2.31 16 39 H 0.07 1.67 7.82 -2.38 -0.02 1.65 16 40 H 0.06 1.49 5.38 -2.39 -0.01 1.48 16 41 H 0.08 1.32 8.14 -2.39 -0.02 1.31 16 42 H 0.08 1.59 4.69 -2.38 -0.01 1.57 16 43 H 0.05 1.50 5.47 -2.39 -0.01 1.49 16 44 H 0.07 1.50 8.14 -2.38 -0.02 1.48 16 45 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 46 H 0.08 1.77 7.47 -2.39 -0.02 1.75 16 47 H 0.06 2.42 4.73 -2.39 -0.01 2.41 16 48 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 49 H 0.05 1.49 8.14 -2.38 -0.02 1.47 16 50 H 0.09 2.15 4.69 -2.39 -0.01 2.14 16 51 H 0.04 1.69 5.38 -2.39 -0.01 1.67 16 52 H 0.07 2.02 7.82 -2.39 -0.02 2.00 16 Total: -1.00 -66.23 365.52 2.09 -64.13 By element: Atomic # 1 Polarization: 25.64 SS G_CDS: 0.89 Total: 26.52 kcal Atomic # 6 Polarization: -41.00 SS G_CDS: 5.01 Total: -35.99 kcal Atomic # 7 Polarization: -96.37 SS G_CDS: -5.68 Total: -102.06 kcal Atomic # 14 Polarization: 45.51 SS G_CDS: 1.88 Total: 47.39 kcal Total: -66.23 2.09 -64.13 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001141036160.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.784 kcal (2) G-P(sol) polarization free energy of solvation -66.225 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.135 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.649 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds