Wall clock time and date at job start Tue Mar 31 2020 11:14:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53003 * 109.47266 * 2 1 4 4 H 1.09003 * 109.46428 * 304.99999 * 3 2 1 5 5 C 1.52994 * 109.47022 * 64.99895 * 3 2 1 6 6 C 1.52996 * 109.47236 * 185.00143 * 3 2 1 7 7 C 1.52994 * 109.47129 * 180.02562 * 6 3 2 8 8 C 1.53001 * 109.47432 * 180.02562 * 7 6 3 9 9 C 1.53004 * 109.46843 * 59.99678 * 8 7 6 10 10 N 1.46497 * 109.47346 * 60.00651 * 9 8 7 11 11 C 1.38366 * 120.00506 * 155.00036 * 10 9 8 12 12 C 1.39712 * 119.42470 * 0.28810 * 11 10 9 13 13 C 1.36565 * 119.48594 * 180.25975 * 12 11 10 14 14 C 1.41320 * 118.41134 * 359.46078 * 13 12 11 15 15 C 1.41200 * 120.56968 * 180.25372 * 14 13 12 16 16 H 1.08004 * 120.00209 * 149.92336 * 15 14 13 17 17 C 1.39875 * 120.00180 * 329.91828 * 15 14 13 18 18 N 1.30897 * 119.99813 * 162.16947 * 17 15 14 19 19 Si 1.86797 * 119.99907 * 342.16863 * 17 15 14 20 20 H 1.48500 * 109.47123 * 95.38692 * 19 17 15 21 21 H 1.48503 * 109.47093 * 215.38766 * 19 17 15 22 22 H 1.48503 * 109.47250 * 335.38596 * 19 17 15 23 23 C 1.40754 * 118.85826 * 0.27800 * 14 13 12 24 24 C 1.50703 * 119.81321 * 179.97438 * 23 14 13 25 25 N 1.31482 * 120.37209 * 359.97438 * 23 14 13 26 26 C 1.52996 * 109.47504 * 300.00006 * 9 8 7 27 27 C 1.53004 * 109.46978 * 59.99801 * 6 3 2 28 28 H 1.09001 * 109.47017 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.46612 * 299.99997 * 1 2 3 30 30 H 1.09002 * 109.47211 * 59.99935 * 1 2 3 31 31 H 1.08994 * 109.46773 * 239.99769 * 2 1 3 32 32 H 1.09002 * 109.47211 * 120.00064 * 2 1 3 33 33 H 1.09005 * 109.47312 * 60.00193 * 5 3 2 34 34 H 1.09002 * 109.47347 * 180.02562 * 5 3 2 35 35 H 1.09000 * 109.47718 * 300.00299 * 5 3 2 36 36 H 1.08998 * 109.47104 * 300.00035 * 6 3 2 37 37 H 1.09003 * 109.47249 * 59.99775 * 7 6 3 38 38 H 1.09005 * 109.46957 * 299.99662 * 7 6 3 39 39 H 1.08998 * 109.46936 * 300.00097 * 8 7 6 40 40 H 1.09001 * 109.47316 * 179.97438 * 8 7 6 41 41 H 1.09000 * 109.46897 * 180.02562 * 9 8 7 42 42 H 0.97005 * 119.99432 * 334.99771 * 10 9 8 43 43 H 1.07990 * 120.25891 * 359.97438 * 12 11 10 44 44 H 1.07997 * 120.79420 * 179.73094 * 13 12 11 45 45 H 0.96998 * 120.00031 * 180.02562 * 18 17 15 46 46 H 1.09003 * 109.47469 * 90.00053 * 24 23 14 47 47 H 1.09003 * 109.46782 * 209.99784 * 24 23 14 48 48 H 1.08998 * 109.47333 * 329.99537 * 24 23 14 49 49 H 1.08990 * 109.47428 * 179.97438 * 26 9 8 50 50 H 1.08999 * 109.47145 * 300.00999 * 26 9 8 51 51 H 1.09001 * 109.47144 * 299.99793 * 27 6 3 52 52 H 1.08998 * 109.47012 * 60.00178 * 27 6 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9815 -0.8419 5 6 1.6353 2.1265 1.3073 6 6 3.5648 1.4443 -0.1258 7 6 4.0749 2.8868 -0.1251 8 6 5.5997 2.8887 -0.2515 9 6 6.0038 2.2053 -1.5595 10 7 5.4193 2.9305 -2.6902 11 6 6.0131 2.8612 -3.9381 12 6 7.1665 2.0912 -4.1075 13 6 7.7566 2.0262 -5.3374 14 6 7.1655 2.7384 -6.4053 15 6 7.7345 2.6988 -7.6970 16 1 7.1038 2.7967 -8.5682 17 6 9.1151 2.5328 -7.8483 18 7 9.6059 2.1497 -8.9997 19 14 10.2584 2.8579 -6.4072 20 1 10.5476 1.5807 -5.7069 21 1 11.5270 3.4478 -6.9051 22 1 9.6093 3.8036 -5.4640 23 6 6.0001 3.4883 -6.1591 24 6 5.3522 4.2565 -7.2822 25 7 5.4736 3.5224 -4.9548 26 6 5.4938 0.7629 -1.5601 27 6 3.9695 0.7602 -1.4331 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 1.8933 -0.5138 -0.8899 32 1 1.8934 -0.5138 0.8900 33 1 2.0699 1.5875 2.1492 34 1 1.9982 3.1543 1.3072 35 1 0.5490 2.1252 1.3970 36 1 3.9995 0.9053 0.7160 37 1 3.7865 3.3737 0.8065 38 1 3.6403 3.4262 -0.9667 39 1 6.0346 2.3491 0.5898 40 1 5.9630 3.9164 -0.2515 41 1 7.0901 2.2063 -1.6493 42 1 4.6158 3.4592 -2.5641 43 1 7.5907 1.5552 -3.2715 44 1 8.6511 1.4409 -5.4912 45 1 10.5633 2.0342 -9.1045 46 1 4.6201 3.6219 -7.7816 47 1 4.8539 5.1382 -6.8791 48 1 6.1140 4.5652 -7.9981 49 1 5.7813 0.2762 -2.4920 50 1 5.9287 0.2234 -0.7187 51 1 3.6062 -0.2674 -1.4331 52 1 3.5349 1.2993 -2.2749 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001160668086.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:14:19 Heat of formation + Delta-G solvation = -7.565384 kcal Electronic energy + Delta-G solvation = -27196.918620 eV Core-core repulsion = 23773.222597 eV Total energy + Delta-G solvation = -3423.696023 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -39.87292 -38.65188 -36.50814 -34.14183 -33.05335 -31.52729 -31.13404 -30.84935 -29.51369 -28.09600 -27.02438 -24.90188 -24.04424 -22.61000 -21.92126 -21.64949 -20.59289 -19.88639 -18.71930 -17.46497 -16.85931 -15.64944 -15.57229 -15.11820 -14.90787 -14.57188 -14.32597 -13.86773 -13.81822 -13.54090 -13.29844 -13.22709 -12.94272 -12.71547 -12.51761 -12.48100 -12.16647 -12.09100 -11.82148 -11.77390 -11.70745 -11.46354 -11.33045 -11.17653 -11.07194 -11.03981 -10.89176 -10.69165 -10.65337 -10.40669 -10.27054 -9.93337 -9.84365 -9.75057 -9.39374 -8.74226 -8.32867 -8.12642 -6.85369 -6.77075 -4.24247 2.51082 2.77988 3.12021 3.21540 3.33769 4.01741 4.03106 4.48765 4.58268 4.64556 4.68861 4.84086 5.01146 5.08210 5.13932 5.31431 5.32188 5.38869 5.42548 5.46186 5.48893 5.54514 5.61769 5.63057 5.72709 5.77021 5.80044 5.82365 5.89521 5.92618 5.95654 6.01225 6.10536 6.15102 6.22385 6.23106 6.24762 6.29671 6.32589 6.39263 6.50205 6.54612 6.63624 6.74026 6.82226 7.04657 7.17214 7.31423 7.61136 7.72510 8.17586 8.34782 8.47541 8.73359 8.86688 9.55415 10.18377 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.021589 B = 0.003019 C = 0.002894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1296.651471 B = 9271.141336 C = 9673.885782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.122 4.122 3 C -0.088 4.088 4 H 0.069 0.931 5 C -0.149 4.149 6 C -0.079 4.079 7 C -0.114 4.114 8 C -0.124 4.124 9 C 0.166 3.834 10 N -0.733 5.733 11 C 0.289 3.711 12 C -0.190 4.190 13 C -0.164 4.164 14 C 0.013 3.987 15 C -0.441 4.441 16 H 0.093 0.907 17 C 0.083 3.917 18 N -0.817 5.817 19 Si 0.903 3.097 20 H -0.273 1.273 21 H -0.291 1.291 22 H -0.248 1.248 23 C 0.063 3.937 24 C -0.074 4.074 25 N -0.514 5.514 26 C -0.136 4.136 27 C -0.110 4.110 28 H 0.050 0.950 29 H 0.054 0.946 30 H 0.053 0.947 31 H 0.066 0.934 32 H 0.058 0.942 33 H 0.051 0.949 34 H 0.056 0.944 35 H 0.053 0.947 36 H 0.065 0.935 37 H 0.062 0.938 38 H 0.063 0.937 39 H 0.069 0.931 40 H 0.065 0.935 41 H 0.071 0.929 42 H 0.389 0.611 43 H 0.102 0.898 44 H 0.107 0.893 45 H 0.282 0.718 46 H 0.052 0.948 47 H 0.049 0.951 48 H 0.073 0.927 49 H 0.066 0.934 50 H 0.059 0.941 51 H 0.058 0.942 52 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.454 -1.977 18.519 21.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.160 4.160 3 C -0.106 4.106 4 H 0.088 0.912 5 C -0.206 4.206 6 C -0.098 4.098 7 C -0.152 4.152 8 C -0.162 4.162 9 C 0.059 3.941 10 N -0.372 5.372 11 C 0.058 3.942 12 C -0.214 4.214 13 C -0.190 4.190 14 C 0.007 3.993 15 C -0.472 4.472 16 H 0.111 0.889 17 C -0.134 4.134 18 N -0.443 5.443 19 Si 0.731 3.269 20 H -0.199 1.199 21 H -0.218 1.218 22 H -0.172 1.172 23 C -0.078 4.078 24 C -0.132 4.132 25 N -0.230 5.230 26 C -0.175 4.175 27 C -0.147 4.147 28 H 0.069 0.931 29 H 0.073 0.927 30 H 0.072 0.928 31 H 0.085 0.915 32 H 0.077 0.923 33 H 0.070 0.930 34 H 0.075 0.925 35 H 0.072 0.928 36 H 0.084 0.916 37 H 0.081 0.919 38 H 0.081 0.919 39 H 0.088 0.912 40 H 0.084 0.916 41 H 0.089 0.911 42 H 0.224 0.776 43 H 0.120 0.880 44 H 0.125 0.875 45 H 0.092 0.908 46 H 0.070 0.930 47 H 0.068 0.932 48 H 0.092 0.908 49 H 0.085 0.915 50 H 0.078 0.922 51 H 0.076 0.924 52 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -10.874 -1.655 18.523 21.542 hybrid contribution 1.231 -0.418 0.449 1.376 sum -9.642 -2.073 18.972 21.382 Atomic orbital electron populations 1.21829 0.96233 1.01294 1.01750 1.21642 0.95556 0.96701 1.02067 1.21192 0.95309 0.95954 0.98157 0.91245 1.21931 1.00943 1.00555 0.97220 1.21181 0.94288 0.96108 0.98176 1.21606 0.95361 0.96561 1.01636 1.21783 0.96340 1.01046 0.97042 1.20603 0.97410 0.90616 0.85464 1.43755 1.31701 1.56617 1.05115 1.17674 0.92511 0.98178 0.85830 1.20694 0.98295 1.04711 0.97736 1.20981 1.01662 1.02630 0.93720 1.18293 0.94159 0.92990 0.93864 1.19200 0.92624 1.42811 0.92549 0.88917 1.26045 0.99281 0.91357 0.96671 1.69721 1.15219 1.33653 1.25714 0.86434 0.78573 0.80028 0.81899 1.19889 1.21807 1.17166 1.20812 0.96798 0.99641 0.90524 1.20317 0.99556 0.97855 0.95478 1.66400 1.33608 1.23045 0.99914 1.22028 0.96184 0.97532 1.01761 1.21530 0.95828 1.00079 0.97278 0.93100 0.92734 0.92797 0.91521 0.92330 0.92992 0.92486 0.92837 0.91610 0.91920 0.91866 0.91224 0.91601 0.91106 0.77572 0.87978 0.87502 0.90762 0.92964 0.93153 0.90824 0.91479 0.92193 0.92362 0.91449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.20 9.67 37.16 0.36 -0.84 16 2 C -0.12 -1.04 5.19 -26.73 -0.14 -1.18 16 3 C -0.09 -0.77 1.97 -90.62 -0.18 -0.95 16 4 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 5 C -0.15 -1.16 8.59 37.15 0.32 -0.84 16 6 C -0.08 -0.75 1.78 -90.62 -0.16 -0.91 16 7 C -0.11 -1.12 4.68 -26.73 -0.13 -1.24 16 8 C -0.12 -1.32 5.61 -26.73 -0.15 -1.47 16 9 C 0.17 2.24 2.46 -67.93 -0.17 2.07 16 10 N -0.73 -12.18 4.38 -53.87 -0.24 -12.42 16 11 C 0.29 6.14 7.62 -155.13 -1.18 4.96 16 12 C -0.19 -4.15 8.71 -39.64 -0.35 -4.49 16 13 C -0.16 -3.97 7.21 -39.01 -0.28 -4.25 16 14 C 0.01 0.32 5.10 -106.65 -0.54 -0.22 16 15 C -0.44 -11.83 8.53 -37.85 -0.32 -12.15 16 16 H 0.09 2.57 7.24 -52.48 -0.38 2.19 16 17 C 0.08 2.20 5.42 -17.34 -0.09 2.10 16 18 N -0.82 -21.93 13.93 55.54 0.77 -21.15 16 19 Si 0.90 20.95 24.53 -169.99 -4.17 16.78 16 20 H -0.27 -6.11 6.71 56.52 0.38 -5.73 16 21 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 22 H -0.25 -5.97 6.85 56.52 0.39 -5.59 16 23 C 0.06 1.53 6.86 -81.79 -0.56 0.97 16 24 C -0.07 -1.55 9.59 36.01 0.35 -1.21 16 25 N -0.51 -11.91 10.29 -8.04 -0.08 -11.99 16 26 C -0.14 -1.71 5.50 -26.75 -0.15 -1.86 16 27 C -0.11 -1.26 4.70 -26.75 -0.13 -1.39 16 28 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.05 0.39 6.56 -51.93 -0.34 0.05 16 30 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 31 H 0.07 0.61 6.17 -51.93 -0.32 0.29 16 32 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 33 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 34 H 0.06 0.44 6.43 -51.93 -0.33 0.10 16 35 H 0.05 0.39 6.57 -51.93 -0.34 0.05 16 36 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.06 0.54 6.43 -51.93 -0.33 0.21 16 38 H 0.06 0.69 6.50 -51.93 -0.34 0.35 16 39 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 41 H 0.07 1.03 6.43 -51.93 -0.33 0.70 16 42 H 0.39 6.21 6.98 -40.82 -0.29 5.93 16 43 H 0.10 1.96 5.98 -52.49 -0.31 1.64 16 44 H 0.11 2.57 4.82 -52.49 -0.25 2.32 16 45 H 0.28 6.90 8.30 -40.82 -0.34 6.56 16 46 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 47 H 0.05 0.96 8.14 -51.93 -0.42 0.53 16 48 H 0.07 1.54 6.85 -51.93 -0.36 1.19 16 49 H 0.07 1.00 7.59 -51.93 -0.39 0.61 16 50 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 51 H 0.06 0.64 6.32 -51.93 -0.33 0.31 16 52 H 0.07 0.92 7.60 -51.93 -0.39 0.53 16 LS Contribution 379.31 15.07 5.72 5.72 Total: -1.00 -27.69 379.31 -10.37 -38.05 By element: Atomic # 1 Polarization: 16.79 SS G_CDS: -8.87 Total: 7.92 kcal Atomic # 6 Polarization: -19.41 SS G_CDS: -3.50 Total: -22.91 kcal Atomic # 7 Polarization: -46.02 SS G_CDS: 0.46 Total: -45.56 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -4.17 Total: 16.78 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -27.69 -10.37 -38.05 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001160668086.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.489 kcal (2) G-P(sol) polarization free energy of solvation -27.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.801 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.366 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.055 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.565 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds