Wall clock time and date at job start Tue Mar 31 2020 11:14:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53003 * 109.47266 * 2 1 4 4 H 1.09003 * 109.46428 * 304.99999 * 3 2 1 5 5 C 1.52994 * 109.47022 * 64.99895 * 3 2 1 6 6 C 1.52996 * 109.47236 * 185.00143 * 3 2 1 7 7 C 1.52994 * 109.47129 * 180.02562 * 6 3 2 8 8 C 1.53001 * 109.47432 * 180.02562 * 7 6 3 9 9 C 1.53004 * 109.46843 * 59.99678 * 8 7 6 10 10 N 1.46497 * 109.47346 * 60.00651 * 9 8 7 11 11 C 1.38366 * 120.00506 * 155.00036 * 10 9 8 12 12 C 1.39712 * 119.42470 * 0.28810 * 11 10 9 13 13 C 1.36565 * 119.48594 * 180.25975 * 12 11 10 14 14 C 1.41320 * 118.41134 * 359.46078 * 13 12 11 15 15 C 1.41200 * 120.56968 * 180.25372 * 14 13 12 16 16 H 1.08004 * 120.00209 * 149.92336 * 15 14 13 17 17 C 1.39875 * 120.00180 * 329.91828 * 15 14 13 18 18 N 1.30897 * 119.99813 * 162.16947 * 17 15 14 19 19 Si 1.86797 * 119.99907 * 342.16863 * 17 15 14 20 20 H 1.48500 * 109.47123 * 95.38692 * 19 17 15 21 21 H 1.48503 * 109.47093 * 215.38766 * 19 17 15 22 22 H 1.48503 * 109.47250 * 335.38596 * 19 17 15 23 23 C 1.40754 * 118.85826 * 0.27800 * 14 13 12 24 24 C 1.50703 * 119.81321 * 179.97438 * 23 14 13 25 25 N 1.31482 * 120.37209 * 359.97438 * 23 14 13 26 26 C 1.52996 * 109.47504 * 300.00006 * 9 8 7 27 27 C 1.53004 * 109.46978 * 59.99801 * 6 3 2 28 28 H 1.09001 * 109.47017 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.46612 * 299.99997 * 1 2 3 30 30 H 1.09002 * 109.47211 * 59.99935 * 1 2 3 31 31 H 1.08994 * 109.46773 * 239.99769 * 2 1 3 32 32 H 1.09002 * 109.47211 * 120.00064 * 2 1 3 33 33 H 1.09005 * 109.47312 * 60.00193 * 5 3 2 34 34 H 1.09002 * 109.47347 * 180.02562 * 5 3 2 35 35 H 1.09000 * 109.47718 * 300.00299 * 5 3 2 36 36 H 1.08998 * 109.47104 * 300.00035 * 6 3 2 37 37 H 1.09003 * 109.47249 * 59.99775 * 7 6 3 38 38 H 1.09005 * 109.46957 * 299.99662 * 7 6 3 39 39 H 1.08998 * 109.46936 * 300.00097 * 8 7 6 40 40 H 1.09001 * 109.47316 * 179.97438 * 8 7 6 41 41 H 1.09000 * 109.46897 * 180.02562 * 9 8 7 42 42 H 0.97005 * 119.99432 * 334.99771 * 10 9 8 43 43 H 1.07990 * 120.25891 * 359.97438 * 12 11 10 44 44 H 1.07997 * 120.79420 * 179.73094 * 13 12 11 45 45 H 0.96998 * 120.00031 * 180.02562 * 18 17 15 46 46 H 1.09003 * 109.47469 * 90.00053 * 24 23 14 47 47 H 1.09003 * 109.46782 * 209.99784 * 24 23 14 48 48 H 1.08998 * 109.47333 * 329.99537 * 24 23 14 49 49 H 1.08990 * 109.47428 * 179.97438 * 26 9 8 50 50 H 1.08999 * 109.47145 * 300.00999 * 26 9 8 51 51 H 1.09001 * 109.47144 * 299.99793 * 27 6 3 52 52 H 1.08998 * 109.47012 * 60.00178 * 27 6 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9815 -0.8419 5 6 1.6353 2.1265 1.3073 6 6 3.5648 1.4443 -0.1258 7 6 4.0749 2.8868 -0.1251 8 6 5.5997 2.8887 -0.2515 9 6 6.0038 2.2053 -1.5595 10 7 5.4193 2.9305 -2.6902 11 6 6.0131 2.8612 -3.9381 12 6 7.1665 2.0912 -4.1075 13 6 7.7566 2.0262 -5.3374 14 6 7.1655 2.7384 -6.4053 15 6 7.7345 2.6988 -7.6970 16 1 7.1038 2.7967 -8.5682 17 6 9.1151 2.5328 -7.8483 18 7 9.6059 2.1497 -8.9997 19 14 10.2584 2.8579 -6.4072 20 1 10.5476 1.5807 -5.7069 21 1 11.5270 3.4478 -6.9051 22 1 9.6093 3.8036 -5.4640 23 6 6.0001 3.4883 -6.1591 24 6 5.3522 4.2565 -7.2822 25 7 5.4736 3.5224 -4.9548 26 6 5.4938 0.7629 -1.5601 27 6 3.9695 0.7602 -1.4331 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 1.8933 -0.5138 -0.8899 32 1 1.8934 -0.5138 0.8900 33 1 2.0699 1.5875 2.1492 34 1 1.9982 3.1543 1.3072 35 1 0.5490 2.1252 1.3970 36 1 3.9995 0.9053 0.7160 37 1 3.7865 3.3737 0.8065 38 1 3.6403 3.4262 -0.9667 39 1 6.0346 2.3491 0.5898 40 1 5.9630 3.9164 -0.2515 41 1 7.0901 2.2063 -1.6493 42 1 4.6158 3.4592 -2.5641 43 1 7.5907 1.5552 -3.2715 44 1 8.6511 1.4409 -5.4912 45 1 10.5633 2.0342 -9.1045 46 1 4.6201 3.6219 -7.7816 47 1 4.8539 5.1382 -6.8791 48 1 6.1140 4.5652 -7.9981 49 1 5.7813 0.2762 -2.4920 50 1 5.9287 0.2234 -0.7187 51 1 3.6062 -0.2674 -1.4331 52 1 3.5349 1.2993 -2.2749 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001160668086.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:14:18 Heat of formation + Delta-G solvation = -20.304055 kcal Electronic energy + Delta-G solvation = -27197.471011 eV Core-core repulsion = 23773.222597 eV Total energy + Delta-G solvation = -3424.248413 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.11265 -40.11517 -37.54481 -35.80564 -34.55192 -33.36429 -32.31199 -31.87968 -30.66118 -29.18382 -28.64590 -25.98984 -25.50153 -23.70849 -23.36980 -22.82975 -22.04044 -20.62472 -19.93464 -19.32500 -18.45168 -17.06201 -16.89705 -16.57074 -16.00560 -15.60885 -15.48508 -15.23515 -15.02215 -14.79004 -14.61666 -14.45504 -14.32539 -14.04333 -13.76370 -13.62260 -13.40600 -13.32619 -13.22985 -12.89037 -12.85109 -12.79940 -12.54056 -12.50867 -12.27387 -12.20639 -11.98235 -11.90059 -11.70572 -11.63210 -11.37487 -11.31317 -11.21787 -10.81483 -10.72247 -10.39071 -10.09551 -9.96398 -8.79659 -8.49206 -6.20693 0.66510 0.90487 1.24985 1.37476 1.47333 2.13508 2.61131 2.71884 3.55082 3.70948 3.79507 3.86778 4.01601 4.08369 4.17902 4.26345 4.29299 4.35246 4.43748 4.52580 4.57439 4.60714 4.65557 4.67663 4.69687 4.77086 4.79620 4.83478 4.92661 4.96722 4.99074 5.03533 5.05592 5.12631 5.14578 5.18528 5.22204 5.24324 5.26670 5.30493 5.34165 5.38238 5.44053 5.48786 5.50806 5.53410 5.66004 5.71830 5.79482 5.86436 6.33445 6.59885 6.62236 6.88594 7.09371 7.75785 8.29117 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.021589 B = 0.003019 C = 0.002894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1296.651471 B = 9271.141336 C = 9673.885782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.121 4.121 3 C -0.085 4.085 4 H 0.054 0.946 5 C -0.146 4.146 6 C -0.071 4.071 7 C -0.111 4.111 8 C -0.116 4.116 9 C 0.158 3.842 10 N -0.720 5.720 11 C 0.307 3.693 12 C -0.199 4.199 13 C -0.166 4.166 14 C -0.018 4.018 15 C -0.466 4.466 16 H 0.066 0.934 17 C 0.047 3.953 18 N -0.858 5.858 19 Si 0.955 3.045 20 H -0.259 1.259 21 H -0.279 1.279 22 H -0.263 1.263 23 C 0.055 3.945 24 C -0.069 4.069 25 N -0.532 5.532 26 C -0.132 4.132 27 C -0.105 4.105 28 H 0.054 0.946 29 H 0.062 0.938 30 H 0.045 0.955 31 H 0.055 0.945 32 H 0.066 0.934 33 H 0.059 0.941 34 H 0.058 0.942 35 H 0.056 0.944 36 H 0.079 0.921 37 H 0.081 0.919 38 H 0.048 0.952 39 H 0.093 0.907 40 H 0.064 0.936 41 H 0.066 0.934 42 H 0.395 0.605 43 H 0.131 0.869 44 H 0.107 0.893 45 H 0.289 0.711 46 H 0.061 0.939 47 H 0.068 0.932 48 H 0.064 0.936 49 H 0.040 0.960 50 H 0.085 0.915 51 H 0.062 0.938 52 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.001 -2.097 22.549 25.177 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.159 4.159 3 C -0.104 4.104 4 H 0.072 0.928 5 C -0.203 4.203 6 C -0.090 4.090 7 C -0.149 4.149 8 C -0.154 4.154 9 C 0.052 3.948 10 N -0.358 5.358 11 C 0.073 3.927 12 C -0.223 4.223 13 C -0.192 4.192 14 C -0.023 4.023 15 C -0.498 4.498 16 H 0.084 0.916 17 C -0.165 4.165 18 N -0.486 5.486 19 Si 0.780 3.220 20 H -0.184 1.184 21 H -0.205 1.205 22 H -0.187 1.187 23 C -0.085 4.085 24 C -0.127 4.127 25 N -0.248 5.248 26 C -0.171 4.171 27 C -0.143 4.143 28 H 0.073 0.927 29 H 0.081 0.919 30 H 0.065 0.935 31 H 0.074 0.926 32 H 0.085 0.915 33 H 0.078 0.922 34 H 0.077 0.923 35 H 0.075 0.925 36 H 0.098 0.902 37 H 0.099 0.901 38 H 0.067 0.933 39 H 0.112 0.888 40 H 0.083 0.917 41 H 0.084 0.916 42 H 0.231 0.769 43 H 0.149 0.851 44 H 0.125 0.875 45 H 0.099 0.901 46 H 0.080 0.920 47 H 0.087 0.913 48 H 0.083 0.917 49 H 0.059 0.941 50 H 0.104 0.896 51 H 0.081 0.919 52 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -11.439 -1.780 22.582 25.376 hybrid contribution 1.190 -0.397 -0.595 1.388 sum -10.249 -2.177 21.987 24.356 Atomic orbital electron populations 1.21823 0.95830 1.01624 1.01783 1.21628 0.95956 0.96423 1.01880 1.21145 0.94731 0.96121 0.98361 0.92770 1.21901 1.01300 1.00554 0.96580 1.21121 0.94798 0.95831 0.97206 1.21598 0.94660 0.96633 1.02002 1.21750 0.96949 1.00932 0.95775 1.20917 0.97010 0.91241 0.85629 1.43979 1.31402 1.56115 1.04287 1.18120 0.91753 0.95880 0.86906 1.20952 0.98467 1.05080 0.97829 1.21145 1.01656 1.02109 0.94339 1.18419 0.95447 0.94564 0.93906 1.19124 0.93040 1.45275 0.92360 0.91636 1.26617 1.00090 0.91172 0.98666 1.69751 1.15929 1.35786 1.27168 0.85646 0.77223 0.79982 0.79177 1.18422 1.20530 1.18703 1.21249 0.96395 0.99200 0.91618 1.20299 0.99420 0.98382 0.94595 1.66559 1.34088 1.24175 1.00021 1.21984 0.96952 0.96696 1.01485 1.21479 0.94937 1.00319 0.97568 0.92669 0.91924 0.93543 0.92639 0.91513 0.92179 0.92293 0.92496 0.90244 0.90059 0.93307 0.88809 0.91717 0.91641 0.76935 0.85101 0.87533 0.90054 0.92049 0.91304 0.91685 0.94116 0.89646 0.91917 0.94092 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.12 9.67 71.98 0.70 -1.42 16 2 C -0.12 -1.80 5.19 30.60 0.16 -1.64 16 3 C -0.09 -1.30 1.97 -10.80 -0.02 -1.32 16 4 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 5 C -0.15 -1.81 8.59 71.98 0.62 -1.19 16 6 C -0.07 -1.13 1.78 -10.80 -0.02 -1.15 16 7 C -0.11 -1.81 4.68 30.59 0.14 -1.66 16 8 C -0.12 -2.03 5.61 30.60 0.17 -1.86 16 9 C 0.16 3.80 2.46 44.99 0.11 3.91 16 10 N -0.72 -22.57 4.38 -324.34 -1.42 -23.99 16 11 C 0.31 12.67 7.62 133.32 1.02 13.69 16 12 C -0.20 -8.42 8.71 22.23 0.19 -8.22 16 13 C -0.17 -8.03 7.21 22.64 0.16 -7.87 16 14 C -0.02 -0.93 5.10 -21.18 -0.11 -1.04 16 15 C -0.47 -26.11 8.53 23.39 0.20 -25.91 16 16 H 0.07 3.88 7.24 -2.91 -0.02 3.86 16 17 C 0.05 2.56 5.42 85.23 0.46 3.02 16 18 N -0.86 -47.65 13.93 21.82 0.30 -47.35 16 19 Si 0.95 43.56 24.53 68.60 1.68 45.24 16 20 H -0.26 -11.09 6.71 99.48 0.67 -10.42 16 21 H -0.28 -12.02 7.11 99.48 0.71 -11.31 16 22 H -0.26 -12.46 6.85 99.48 0.68 -11.78 16 23 C 0.06 2.68 6.86 43.23 0.30 2.98 16 24 C -0.07 -2.94 9.59 71.24 0.68 -2.25 16 25 N -0.53 -24.32 10.29 -179.36 -1.85 -26.16 16 26 C -0.13 -2.99 5.50 30.58 0.17 -2.82 16 27 C -0.11 -2.22 4.70 30.58 0.14 -2.07 16 28 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 29 H 0.06 0.76 6.56 -2.39 -0.02 0.74 16 30 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 31 H 0.05 0.94 6.17 -2.39 -0.01 0.93 16 32 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 33 H 0.06 0.66 8.14 -2.38 -0.02 0.64 16 34 H 0.06 0.71 6.43 -2.39 -0.02 0.69 16 35 H 0.06 0.67 6.57 -2.39 -0.02 0.66 16 36 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 37 H 0.08 1.07 6.43 -2.39 -0.02 1.06 16 38 H 0.05 0.94 6.50 -2.38 -0.02 0.93 16 39 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 40 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 41 H 0.07 1.70 6.43 -2.39 -0.02 1.68 16 42 H 0.39 11.88 6.98 -92.70 -0.65 11.23 16 43 H 0.13 4.71 5.98 -2.92 -0.02 4.69 16 44 H 0.11 5.09 4.82 -2.91 -0.01 5.08 16 45 H 0.29 14.54 8.30 -92.71 -0.77 13.78 16 46 H 0.06 2.44 8.14 -2.39 -0.02 2.43 16 47 H 0.07 2.59 8.14 -2.39 -0.02 2.57 16 48 H 0.06 2.84 6.85 -2.39 -0.02 2.82 16 49 H 0.04 1.14 7.59 -2.39 -0.02 1.12 16 50 H 0.09 1.53 8.14 -2.39 -0.02 1.52 16 51 H 0.06 1.27 6.32 -2.39 -0.02 1.25 16 52 H 0.04 1.07 7.60 -2.39 -0.02 1.06 16 Total: -1.00 -61.14 379.31 3.99 -57.14 By element: Atomic # 1 Polarization: 31.77 SS G_CDS: 0.20 Total: 31.96 kcal Atomic # 6 Polarization: -41.92 SS G_CDS: 5.08 Total: -36.85 kcal Atomic # 7 Polarization: -94.54 SS G_CDS: -2.96 Total: -97.50 kcal Atomic # 14 Polarization: 43.56 SS G_CDS: 1.68 Total: 45.24 kcal Total: -61.14 3.99 -57.14 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001160668086.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.838 kcal (2) G-P(sol) polarization free energy of solvation -61.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.143 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds