Wall clock time and date at job start Tue Mar 31 2020 11:14:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52998 * 109.47400 * 2 1 4 4 H 1.08997 * 109.46975 * 54.99702 * 3 2 1 5 5 C 1.52998 * 109.47254 * 294.99864 * 3 2 1 6 6 C 1.52997 * 109.47321 * 174.99917 * 3 2 1 7 7 C 1.53004 * 109.47395 * 300.00198 * 6 3 2 8 8 C 1.52997 * 109.47395 * 180.02562 * 7 6 3 9 9 C 1.53000 * 109.47044 * 59.99542 * 8 7 6 10 10 N 1.46506 * 109.47115 * 60.00407 * 9 8 7 11 11 C 1.38371 * 120.00400 * 154.99757 * 10 9 8 12 12 C 1.39708 * 119.42806 * 0.29075 * 11 10 9 13 13 C 1.36561 * 119.49129 * 180.25528 * 12 11 10 14 14 C 1.41322 * 118.40969 * 359.46452 * 13 12 11 15 15 C 1.41194 * 120.56955 * 180.25350 * 14 13 12 16 16 H 1.08004 * 120.00059 * 154.76150 * 15 14 13 17 17 C 1.39876 * 120.00213 * 334.76098 * 15 14 13 18 18 N 1.30895 * 119.99985 * 343.70368 * 17 15 14 19 19 Si 1.86804 * 120.00038 * 163.70181 * 17 15 14 20 20 H 1.48505 * 109.47076 * 0.02562 * 19 17 15 21 21 H 1.48499 * 109.46974 * 119.99667 * 19 17 15 22 22 H 1.48493 * 109.46975 * 240.00233 * 19 17 15 23 23 C 1.40754 * 118.85442 * 0.26839 * 14 13 12 24 24 C 1.50705 * 119.81032 * 179.97438 * 23 14 13 25 25 N 1.31481 * 120.37102 * 0.02562 * 23 14 13 26 26 C 1.52998 * 109.47605 * 299.99992 * 9 8 7 27 27 C 1.52998 * 109.47321 * 180.02562 * 6 3 2 28 28 H 1.09000 * 109.47185 * 59.99696 * 1 2 3 29 29 H 1.09004 * 109.47437 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.46947 * 300.00344 * 1 2 3 31 31 H 1.09002 * 109.46947 * 239.99656 * 2 1 3 32 32 H 1.09000 * 109.47185 * 120.00304 * 2 1 3 33 33 H 1.09006 * 109.47334 * 300.00321 * 5 3 2 34 34 H 1.09005 * 109.46866 * 59.99435 * 5 3 2 35 35 H 1.08991 * 109.47755 * 179.97438 * 5 3 2 36 36 H 1.09004 * 109.47086 * 59.99659 * 6 3 2 37 37 H 1.08995 * 109.47167 * 59.99373 * 7 6 3 38 38 H 1.09004 * 109.46563 * 299.99781 * 7 6 3 39 39 H 1.08998 * 109.46883 * 300.00137 * 8 7 6 40 40 H 1.08997 * 109.47087 * 179.97438 * 8 7 6 41 41 H 1.09005 * 109.46898 * 180.02562 * 9 8 7 42 42 H 0.96996 * 119.99668 * 334.99760 * 10 9 8 43 43 H 1.08004 * 120.25636 * 359.97438 * 12 11 10 44 44 H 1.08008 * 120.79259 * 179.73346 * 13 12 11 45 45 H 0.96999 * 119.99974 * 180.02562 * 18 17 15 46 46 H 1.09000 * 109.47173 * 90.00392 * 24 23 14 47 47 H 1.08999 * 109.47070 * 210.00622 * 24 23 14 48 48 H 1.08998 * 109.47122 * 330.00629 * 24 23 14 49 49 H 1.08999 * 109.47119 * 179.97438 * 26 9 8 50 50 H 1.08997 * 109.46997 * 299.99949 * 26 9 8 51 51 H 1.08997 * 109.46951 * 299.99974 * 27 6 3 52 52 H 1.08997 * 109.46975 * 59.99785 * 27 6 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 1.6353 2.1265 -1.3073 6 6 3.5648 1.4443 0.1257 7 6 3.9696 0.7602 1.4331 8 6 5.4944 0.7626 1.5591 9 6 6.0038 2.2052 1.5593 10 7 5.4192 2.9294 2.6908 11 6 6.0710 4.0296 3.2193 12 6 7.2830 4.4432 2.6608 13 6 7.9300 5.5257 3.1848 14 6 7.3371 6.2001 4.2760 15 6 7.9639 7.3278 4.8496 16 1 7.3737 8.0667 5.3714 17 6 9.3493 7.4882 4.7422 18 7 10.1016 6.4714 4.4051 19 14 10.1258 9.1533 5.0797 20 1 9.0664 10.1296 5.4400 21 1 11.0889 9.0317 6.2034 22 1 10.8392 9.6221 3.8647 23 6 6.1111 5.7281 4.7813 24 6 5.4600 6.4306 5.9448 25 7 5.5313 4.6771 4.2446 26 6 5.5992 2.8893 0.2520 27 6 4.0748 2.8867 0.1264 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 2.0699 1.5874 -2.1492 34 1 0.5490 2.1252 -1.3969 35 1 1.9983 3.1542 -1.3072 36 1 3.9994 0.9051 -0.7161 37 1 3.6062 -0.2674 1.4331 38 1 3.5350 1.2993 2.2749 39 1 5.9293 0.2238 0.7173 40 1 5.7827 0.2756 2.4907 41 1 7.0902 2.2069 1.6487 42 1 4.5752 2.6376 3.0694 43 1 7.7073 3.9082 1.8241 44 1 8.8702 5.8610 2.7722 45 1 11.0623 6.5825 4.3310 46 1 4.7981 7.2127 5.5728 47 1 4.8825 5.7119 6.5262 48 1 6.2285 6.8754 6.5769 49 1 5.9617 3.9172 0.2524 50 1 6.0342 2.3506 -0.5897 51 1 3.7865 3.3744 -0.8048 52 1 3.6402 3.4254 0.9684 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001160668087.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:14:22 Heat of formation + Delta-G solvation = -9.414630 kcal Electronic energy + Delta-G solvation = -27057.301969 eV Core-core repulsion = 23633.525756 eV Total energy + Delta-G solvation = -3423.776212 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -39.74600 -38.38649 -36.39936 -34.14096 -32.96228 -31.28441 -30.77943 -30.51679 -29.36240 -27.94317 -26.76841 -24.78612 -24.24841 -22.45637 -21.91245 -21.20997 -20.46039 -19.82753 -18.62580 -17.15137 -16.68481 -15.57699 -15.39695 -15.03638 -14.82563 -14.36823 -14.22910 -13.76309 -13.66309 -13.49085 -13.40083 -13.09267 -12.81172 -12.46470 -12.35000 -12.17895 -12.13959 -11.75917 -11.62495 -11.59648 -11.49820 -11.45686 -11.19454 -11.12006 -10.98981 -10.90448 -10.87401 -10.77766 -10.61932 -10.49665 -10.30959 -9.91447 -9.71586 -9.58909 -9.29709 -8.54916 -8.09033 -7.92346 -6.74926 -6.49918 -4.11783 2.78374 3.01716 3.11716 3.16920 3.34444 3.99538 4.20883 4.55875 4.64299 4.74107 4.75970 4.90419 5.05567 5.14261 5.28422 5.33358 5.40693 5.44084 5.49892 5.53990 5.66241 5.68474 5.69867 5.77497 5.79064 5.83632 5.87621 5.91550 5.95800 5.99794 6.06552 6.12264 6.21581 6.28768 6.30146 6.35874 6.43123 6.44887 6.54548 6.59284 6.63619 6.68026 6.73235 6.86440 7.11028 7.28031 7.46326 7.55908 7.83456 7.97206 8.37130 8.51569 8.74765 8.91303 9.00857 9.81849 10.29520 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.024901 B = 0.002710 C = 0.002635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1124.170053 B =10330.759148 C =10623.557969 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.122 4.122 3 C -0.088 4.088 4 H 0.069 0.931 5 C -0.150 4.150 6 C -0.079 4.079 7 C -0.114 4.114 8 C -0.124 4.124 9 C 0.168 3.832 10 N -0.734 5.734 11 C 0.291 3.709 12 C -0.210 4.210 13 C -0.090 4.090 14 C 0.031 3.969 15 C -0.453 4.453 16 H 0.079 0.921 17 C 0.073 3.927 18 N -0.808 5.808 19 Si 0.905 3.095 20 H -0.261 1.261 21 H -0.276 1.276 22 H -0.274 1.274 23 C 0.037 3.963 24 C -0.070 4.070 25 N -0.524 5.524 26 C -0.135 4.135 27 C -0.109 4.109 28 H 0.054 0.946 29 H 0.049 0.951 30 H 0.053 0.947 31 H 0.058 0.942 32 H 0.065 0.935 33 H 0.051 0.949 34 H 0.052 0.948 35 H 0.058 0.942 36 H 0.065 0.935 37 H 0.061 0.939 38 H 0.063 0.937 39 H 0.068 0.932 40 H 0.065 0.935 41 H 0.071 0.929 42 H 0.387 0.613 43 H 0.097 0.903 44 H 0.125 0.875 45 H 0.277 0.723 46 H 0.046 0.954 47 H 0.046 0.954 48 H 0.067 0.933 49 H 0.066 0.934 50 H 0.058 0.942 51 H 0.056 0.944 52 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.710 -10.423 -9.574 17.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.159 4.159 3 C -0.106 4.106 4 H 0.087 0.913 5 C -0.207 4.207 6 C -0.097 4.097 7 C -0.152 4.152 8 C -0.162 4.162 9 C 0.061 3.939 10 N -0.373 5.373 11 C 0.058 3.942 12 C -0.234 4.234 13 C -0.117 4.117 14 C 0.026 3.974 15 C -0.485 4.485 16 H 0.097 0.903 17 C -0.143 4.143 18 N -0.435 5.435 19 Si 0.730 3.270 20 H -0.185 1.185 21 H -0.202 1.202 22 H -0.200 1.200 23 C -0.101 4.101 24 C -0.127 4.127 25 N -0.241 5.241 26 C -0.174 4.174 27 C -0.146 4.146 28 H 0.073 0.927 29 H 0.068 0.932 30 H 0.072 0.928 31 H 0.077 0.923 32 H 0.084 0.916 33 H 0.070 0.930 34 H 0.071 0.929 35 H 0.077 0.923 36 H 0.084 0.916 37 H 0.080 0.920 38 H 0.081 0.919 39 H 0.087 0.913 40 H 0.084 0.916 41 H 0.089 0.911 42 H 0.221 0.779 43 H 0.115 0.885 44 H 0.143 0.857 45 H 0.088 0.912 46 H 0.065 0.935 47 H 0.065 0.935 48 H 0.086 0.914 49 H 0.085 0.915 50 H 0.077 0.923 51 H 0.075 0.925 52 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -11.100 -10.773 -9.365 18.082 hybrid contribution 1.105 0.872 -0.162 1.417 sum -9.995 -9.901 -9.527 16.991 Atomic orbital electron populations 1.21830 0.96269 1.01204 1.01825 1.21644 0.95530 0.96790 1.01942 1.21194 0.95384 0.95757 0.98290 0.91257 1.21925 1.00830 1.00777 0.97136 1.21180 0.94219 0.96686 0.97636 1.21614 0.95677 1.00217 0.97679 1.21785 0.96034 0.96402 1.02018 1.20563 0.97536 0.89969 0.85850 1.43742 1.25858 1.31618 1.36119 1.17716 0.91270 0.90882 0.94349 1.20823 0.97044 1.01790 1.03777 1.21275 0.99849 0.95346 0.95207 1.18150 0.92450 0.94400 0.92427 1.19351 0.91737 1.06010 1.31383 0.90294 1.25845 0.97641 0.97587 0.93195 1.69828 1.06306 1.30364 1.37013 0.86319 0.79401 0.82757 0.78562 1.18493 1.20201 1.19959 1.20711 0.96253 0.94311 0.98863 1.20244 0.99131 0.98067 0.95305 1.66316 1.35933 1.10336 1.11471 1.22023 0.96159 1.01644 0.97592 1.21515 0.95745 0.95710 1.01672 0.92684 0.93160 0.92815 0.92326 0.91649 0.93011 0.92897 0.92342 0.91646 0.92002 0.91865 0.91322 0.91642 0.91065 0.77883 0.88509 0.85706 0.91235 0.93532 0.93513 0.91407 0.91500 0.92331 0.92503 0.91472 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.19 9.67 37.16 0.36 -0.83 16 2 C -0.12 -1.01 5.19 -26.73 -0.14 -1.15 16 3 C -0.09 -0.82 1.97 -90.62 -0.18 -1.00 16 4 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 5 C -0.15 -1.33 8.60 37.16 0.32 -1.01 16 6 C -0.08 -0.80 1.78 -90.62 -0.16 -0.96 16 7 C -0.11 -1.21 4.69 -26.73 -0.13 -1.33 16 8 C -0.12 -1.44 5.61 -26.73 -0.15 -1.59 16 9 C 0.17 2.45 2.46 -67.93 -0.17 2.28 16 10 N -0.73 -13.10 4.37 -53.86 -0.24 -13.34 16 11 C 0.29 6.58 7.62 -155.13 -1.18 5.40 16 12 C -0.21 -4.91 8.71 -39.64 -0.35 -5.25 16 13 C -0.09 -2.34 8.73 -39.02 -0.34 -2.68 16 14 C 0.03 0.82 5.58 -106.65 -0.59 0.23 16 15 C -0.45 -11.91 8.14 -37.85 -0.31 -12.22 16 16 H 0.08 1.99 6.86 -52.48 -0.36 1.63 16 17 C 0.07 1.83 5.19 -17.34 -0.09 1.74 16 18 N -0.81 -20.98 10.95 55.54 0.61 -20.37 16 19 Si 0.90 18.82 29.59 -169.99 -5.03 13.79 16 20 H -0.26 -5.37 7.11 56.52 0.40 -4.97 16 21 H -0.28 -5.69 7.11 56.52 0.40 -5.29 16 22 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 23 C 0.04 0.94 6.86 -81.79 -0.56 0.38 16 24 C -0.07 -1.51 9.58 36.01 0.34 -1.17 16 25 N -0.52 -12.88 10.29 -8.05 -0.08 -12.96 16 26 C -0.13 -1.82 5.50 -26.76 -0.15 -1.97 16 27 C -0.11 -1.34 4.69 -26.76 -0.13 -1.46 16 28 H 0.05 0.41 6.56 -51.93 -0.34 0.07 16 29 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.06 0.55 6.17 -51.93 -0.32 0.23 16 33 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 34 H 0.05 0.43 6.57 -51.93 -0.34 0.09 16 35 H 0.06 0.55 6.43 -51.93 -0.33 0.22 16 36 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.06 0.58 6.32 -51.93 -0.33 0.25 16 38 H 0.06 0.74 6.50 -51.93 -0.34 0.41 16 39 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 41 H 0.07 1.14 6.43 -51.93 -0.33 0.80 16 42 H 0.39 6.65 6.98 -40.82 -0.29 6.36 16 43 H 0.10 2.02 5.98 -52.48 -0.31 1.71 16 44 H 0.13 3.32 6.26 -52.48 -0.33 3.00 16 45 H 0.28 6.57 8.30 -40.82 -0.34 6.24 16 46 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 47 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 48 H 0.07 1.45 6.76 -51.93 -0.35 1.10 16 49 H 0.07 1.06 7.59 -51.93 -0.39 0.67 16 50 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 51 H 0.06 0.66 6.43 -51.93 -0.33 0.33 16 52 H 0.07 0.97 7.60 -51.93 -0.39 0.58 16 LS Contribution 384.38 15.07 5.79 5.79 Total: -1.00 -27.62 384.38 -11.42 -39.04 By element: Atomic # 1 Polarization: 19.54 SS G_CDS: -8.88 Total: 10.65 kcal Atomic # 6 Polarization: -19.01 SS G_CDS: -3.59 Total: -22.60 kcal Atomic # 7 Polarization: -46.96 SS G_CDS: 0.29 Total: -46.67 kcal Atomic # 14 Polarization: 18.82 SS G_CDS: -5.03 Total: 13.79 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -27.62 -11.42 -39.04 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001160668087.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.628 kcal (2) G-P(sol) polarization free energy of solvation -27.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.043 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds