Wall clock time and date at job start Tue Mar 31 2020 11:14:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52998 * 109.47400 * 2 1 4 4 H 1.08997 * 109.46975 * 54.99702 * 3 2 1 5 5 C 1.52998 * 109.47254 * 294.99864 * 3 2 1 6 6 C 1.52997 * 109.47321 * 174.99917 * 3 2 1 7 7 C 1.53004 * 109.47395 * 300.00198 * 6 3 2 8 8 C 1.52997 * 109.47395 * 180.02562 * 7 6 3 9 9 C 1.53000 * 109.47044 * 59.99542 * 8 7 6 10 10 N 1.46506 * 109.47115 * 60.00407 * 9 8 7 11 11 C 1.38371 * 120.00400 * 154.99757 * 10 9 8 12 12 C 1.39708 * 119.42806 * 0.29075 * 11 10 9 13 13 C 1.36561 * 119.49129 * 180.25528 * 12 11 10 14 14 C 1.41322 * 118.40969 * 359.46452 * 13 12 11 15 15 C 1.41194 * 120.56955 * 180.25350 * 14 13 12 16 16 H 1.08004 * 120.00059 * 154.76150 * 15 14 13 17 17 C 1.39876 * 120.00213 * 334.76098 * 15 14 13 18 18 N 1.30895 * 119.99985 * 343.70368 * 17 15 14 19 19 Si 1.86804 * 120.00038 * 163.70181 * 17 15 14 20 20 H 1.48505 * 109.47076 * 0.02562 * 19 17 15 21 21 H 1.48499 * 109.46974 * 119.99667 * 19 17 15 22 22 H 1.48493 * 109.46975 * 240.00233 * 19 17 15 23 23 C 1.40754 * 118.85442 * 0.26839 * 14 13 12 24 24 C 1.50705 * 119.81032 * 179.97438 * 23 14 13 25 25 N 1.31481 * 120.37102 * 0.02562 * 23 14 13 26 26 C 1.52998 * 109.47605 * 299.99992 * 9 8 7 27 27 C 1.52998 * 109.47321 * 180.02562 * 6 3 2 28 28 H 1.09000 * 109.47185 * 59.99696 * 1 2 3 29 29 H 1.09004 * 109.47437 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.46947 * 300.00344 * 1 2 3 31 31 H 1.09002 * 109.46947 * 239.99656 * 2 1 3 32 32 H 1.09000 * 109.47185 * 120.00304 * 2 1 3 33 33 H 1.09006 * 109.47334 * 300.00321 * 5 3 2 34 34 H 1.09005 * 109.46866 * 59.99435 * 5 3 2 35 35 H 1.08991 * 109.47755 * 179.97438 * 5 3 2 36 36 H 1.09004 * 109.47086 * 59.99659 * 6 3 2 37 37 H 1.08995 * 109.47167 * 59.99373 * 7 6 3 38 38 H 1.09004 * 109.46563 * 299.99781 * 7 6 3 39 39 H 1.08998 * 109.46883 * 300.00137 * 8 7 6 40 40 H 1.08997 * 109.47087 * 179.97438 * 8 7 6 41 41 H 1.09005 * 109.46898 * 180.02562 * 9 8 7 42 42 H 0.96996 * 119.99668 * 334.99760 * 10 9 8 43 43 H 1.08004 * 120.25636 * 359.97438 * 12 11 10 44 44 H 1.08008 * 120.79259 * 179.73346 * 13 12 11 45 45 H 0.96999 * 119.99974 * 180.02562 * 18 17 15 46 46 H 1.09000 * 109.47173 * 90.00392 * 24 23 14 47 47 H 1.08999 * 109.47070 * 210.00622 * 24 23 14 48 48 H 1.08998 * 109.47122 * 330.00629 * 24 23 14 49 49 H 1.08999 * 109.47119 * 179.97438 * 26 9 8 50 50 H 1.08997 * 109.46997 * 299.99949 * 26 9 8 51 51 H 1.08997 * 109.46951 * 299.99974 * 27 6 3 52 52 H 1.08997 * 109.46975 * 59.99785 * 27 6 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 1.6353 2.1265 -1.3073 6 6 3.5648 1.4443 0.1257 7 6 3.9696 0.7602 1.4331 8 6 5.4944 0.7626 1.5591 9 6 6.0038 2.2052 1.5593 10 7 5.4192 2.9294 2.6908 11 6 6.0710 4.0296 3.2193 12 6 7.2830 4.4432 2.6608 13 6 7.9300 5.5257 3.1848 14 6 7.3371 6.2001 4.2760 15 6 7.9639 7.3278 4.8496 16 1 7.3737 8.0667 5.3714 17 6 9.3493 7.4882 4.7422 18 7 10.1016 6.4714 4.4051 19 14 10.1258 9.1533 5.0797 20 1 9.0664 10.1296 5.4400 21 1 11.0889 9.0317 6.2034 22 1 10.8392 9.6221 3.8647 23 6 6.1111 5.7281 4.7813 24 6 5.4600 6.4306 5.9448 25 7 5.5313 4.6771 4.2446 26 6 5.5992 2.8893 0.2520 27 6 4.0748 2.8867 0.1264 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 2.0699 1.5874 -2.1492 34 1 0.5490 2.1252 -1.3969 35 1 1.9983 3.1542 -1.3072 36 1 3.9994 0.9051 -0.7161 37 1 3.6062 -0.2674 1.4331 38 1 3.5350 1.2993 2.2749 39 1 5.9293 0.2238 0.7173 40 1 5.7827 0.2756 2.4907 41 1 7.0902 2.2069 1.6487 42 1 4.5752 2.6376 3.0694 43 1 7.7073 3.9082 1.8241 44 1 8.8702 5.8610 2.7722 45 1 11.0623 6.5825 4.3310 46 1 4.7981 7.2127 5.5728 47 1 4.8825 5.7119 6.5262 48 1 6.2285 6.8754 6.5769 49 1 5.9617 3.9172 0.2524 50 1 6.0342 2.3506 -0.5897 51 1 3.7865 3.3744 -0.8048 52 1 3.6402 3.4254 0.9684 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001160668087.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:14:21 Heat of formation + Delta-G solvation = -20.761790 kcal Electronic energy + Delta-G solvation = -27057.794019 eV Core-core repulsion = 23633.525756 eV Total energy + Delta-G solvation = -3424.268262 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.98599 -39.97386 -37.49430 -35.84064 -34.45232 -32.81953 -32.21782 -31.71690 -30.60180 -29.01247 -28.55304 -26.08375 -25.59742 -23.49323 -23.09561 -22.88280 -21.96940 -20.61637 -19.90826 -19.05671 -18.28406 -16.91972 -16.75622 -16.54410 -15.87786 -15.48372 -15.40262 -15.30565 -14.95455 -14.78336 -14.47106 -14.38889 -14.06487 -13.65647 -13.60373 -13.44382 -13.31107 -13.25903 -13.09554 -12.92647 -12.82558 -12.75329 -12.59200 -12.49589 -12.27623 -12.19479 -11.98677 -11.88095 -11.71557 -11.46888 -11.36604 -11.22281 -11.16709 -10.82391 -10.65509 -10.26269 -9.97219 -9.84569 -8.61155 -8.30342 -6.06017 0.91470 1.15703 1.41490 1.55229 1.57685 2.25868 2.71852 2.86084 3.72705 3.75614 3.80538 3.88918 4.08396 4.16399 4.21216 4.32207 4.38661 4.43770 4.57066 4.60578 4.64466 4.66201 4.68048 4.73213 4.77862 4.78758 4.80764 4.87533 4.98148 5.00318 5.05044 5.06095 5.12166 5.17125 5.19537 5.23331 5.26194 5.27922 5.31870 5.35045 5.39126 5.41711 5.48757 5.53426 5.58821 5.65179 5.70508 5.74916 5.94386 6.04834 6.55202 6.72805 6.90650 6.99118 7.22686 7.93460 8.44520 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.024901 B = 0.002710 C = 0.002635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1124.170053 B =10330.759148 C =10623.557969 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.118 4.118 3 C -0.085 4.085 4 H 0.054 0.946 5 C -0.148 4.148 6 C -0.071 4.071 7 C -0.111 4.111 8 C -0.116 4.116 9 C 0.161 3.839 10 N -0.722 5.722 11 C 0.298 3.702 12 C -0.216 4.216 13 C -0.107 4.107 14 C -0.005 4.005 15 C -0.481 4.481 16 H 0.080 0.920 17 C 0.031 3.969 18 N -0.842 5.842 19 Si 0.978 3.022 20 H -0.257 1.257 21 H -0.270 1.270 22 H -0.269 1.269 23 C 0.022 3.978 24 C -0.063 4.063 25 N -0.541 5.541 26 C -0.130 4.130 27 C -0.104 4.104 28 H 0.057 0.943 29 H 0.058 0.942 30 H 0.047 0.953 31 H 0.066 0.934 32 H 0.066 0.934 33 H 0.060 0.940 34 H 0.058 0.942 35 H 0.047 0.953 36 H 0.080 0.920 37 H 0.082 0.918 38 H 0.047 0.953 39 H 0.093 0.907 40 H 0.062 0.938 41 H 0.058 0.942 42 H 0.392 0.608 43 H 0.117 0.883 44 H 0.111 0.889 45 H 0.283 0.717 46 H 0.060 0.940 47 H 0.059 0.941 48 H 0.065 0.935 49 H 0.036 0.964 50 H 0.084 0.916 51 H 0.063 0.937 52 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.520 -11.709 -10.620 19.560 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.156 4.156 3 C -0.104 4.104 4 H 0.072 0.928 5 C -0.205 4.205 6 C -0.089 4.089 7 C -0.148 4.148 8 C -0.154 4.154 9 C 0.055 3.945 10 N -0.361 5.361 11 C 0.063 3.937 12 C -0.240 4.240 13 C -0.134 4.134 14 C -0.011 4.011 15 C -0.513 4.513 16 H 0.098 0.902 17 C -0.182 4.182 18 N -0.470 5.470 19 Si 0.800 3.200 20 H -0.180 1.180 21 H -0.195 1.195 22 H -0.194 1.194 23 C -0.116 4.116 24 C -0.121 4.121 25 N -0.258 5.258 26 C -0.169 4.169 27 C -0.141 4.141 28 H 0.076 0.924 29 H 0.077 0.923 30 H 0.066 0.934 31 H 0.085 0.915 32 H 0.084 0.916 33 H 0.079 0.921 34 H 0.077 0.923 35 H 0.066 0.934 36 H 0.098 0.902 37 H 0.101 0.899 38 H 0.066 0.934 39 H 0.111 0.889 40 H 0.080 0.920 41 H 0.076 0.924 42 H 0.227 0.773 43 H 0.134 0.866 44 H 0.129 0.871 45 H 0.094 0.906 46 H 0.079 0.921 47 H 0.078 0.922 48 H 0.084 0.916 49 H 0.055 0.945 50 H 0.102 0.898 51 H 0.082 0.918 52 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -11.936 -12.094 -10.429 19.938 hybrid contribution 1.273 1.136 0.086 1.709 sum -10.663 -10.958 -10.344 18.460 Atomic orbital electron populations 1.21828 0.95928 1.01722 1.01668 1.21614 0.95842 0.95755 1.02348 1.21146 0.94625 0.96588 0.97995 0.92784 1.21909 1.01311 1.00200 0.97113 1.21120 0.94847 0.94990 0.97942 1.21601 0.94744 1.01249 0.97235 1.21749 0.96797 0.93901 1.02977 1.20831 0.96788 0.91803 0.85060 1.43891 1.25644 1.30115 1.36444 1.18066 0.90986 0.91260 0.93338 1.20982 0.97359 1.01377 1.04313 1.21286 0.99796 0.96566 0.95785 1.18493 0.93643 0.95526 0.93390 1.19547 0.92684 1.06393 1.32638 0.90151 1.26674 0.97698 1.01145 0.92645 1.69890 1.06849 1.32311 1.37919 0.85211 0.78379 0.77875 0.78557 1.18041 1.19488 1.19373 1.21257 0.96167 0.94556 0.99626 1.20224 0.99165 0.98426 0.94239 1.66465 1.36267 1.10698 1.12418 1.21963 0.97157 1.00043 0.97772 1.21457 0.94610 0.97213 1.00849 0.92431 0.92321 0.93433 0.91481 0.91584 0.92135 0.92308 0.93357 0.90191 0.89944 0.93407 0.88854 0.91952 0.92414 0.77303 0.86560 0.87147 0.90636 0.92135 0.92218 0.91610 0.94466 0.89791 0.91836 0.94174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.04 9.67 71.98 0.70 -1.34 16 2 C -0.12 -1.64 5.19 30.59 0.16 -1.48 16 3 C -0.09 -1.42 1.97 -10.80 -0.02 -1.44 16 4 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 5 C -0.15 -2.33 8.60 71.98 0.62 -1.72 16 6 C -0.07 -1.27 1.78 -10.79 -0.02 -1.29 16 7 C -0.11 -2.07 4.69 30.59 0.14 -1.93 16 8 C -0.12 -2.41 5.61 30.59 0.17 -2.24 16 9 C 0.16 4.52 2.46 44.99 0.11 4.63 16 10 N -0.72 -25.65 4.37 -324.32 -1.42 -27.07 16 11 C 0.30 13.69 7.62 133.32 1.02 14.71 16 12 C -0.22 -10.35 8.71 22.23 0.19 -10.16 16 13 C -0.11 -5.81 8.73 22.64 0.20 -5.61 16 14 C -0.01 -0.30 5.58 -21.18 -0.12 -0.42 16 15 C -0.48 -26.01 8.14 23.39 0.19 -25.82 16 16 H 0.08 4.15 6.86 -2.91 -0.02 4.13 16 17 C 0.03 1.57 5.19 85.23 0.44 2.01 16 18 N -0.84 -44.89 10.95 21.82 0.24 -44.66 16 19 Si 0.98 39.00 29.59 68.60 2.03 41.03 16 20 H -0.26 -9.95 7.11 99.48 0.71 -9.24 16 21 H -0.27 -10.38 7.11 99.48 0.71 -9.68 16 22 H -0.27 -10.38 7.11 99.48 0.71 -9.67 16 23 C 0.02 1.13 6.86 43.23 0.30 1.42 16 24 C -0.06 -2.74 9.58 71.24 0.68 -2.06 16 25 N -0.54 -26.96 10.29 -179.37 -1.85 -28.80 16 26 C -0.13 -3.38 5.50 30.58 0.17 -3.21 16 27 C -0.10 -2.43 4.69 30.58 0.14 -2.29 16 28 H 0.06 0.73 6.56 -2.39 -0.02 0.71 16 29 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 30 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 31 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 32 H 0.07 0.91 6.17 -2.39 -0.01 0.90 16 33 H 0.06 0.85 8.14 -2.38 -0.02 0.83 16 34 H 0.06 0.85 6.57 -2.38 -0.02 0.84 16 35 H 0.05 0.85 6.43 -2.39 -0.02 0.84 16 36 H 0.08 1.28 8.14 -2.38 -0.02 1.26 16 37 H 0.08 1.26 6.32 -2.39 -0.02 1.24 16 38 H 0.05 1.05 6.50 -2.38 -0.02 1.04 16 39 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 40 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 41 H 0.06 1.80 6.43 -2.38 -0.02 1.79 16 42 H 0.39 13.33 6.98 -92.71 -0.65 12.68 16 43 H 0.12 4.96 5.98 -2.91 -0.02 4.94 16 44 H 0.11 6.18 6.26 -2.91 -0.02 6.16 16 45 H 0.28 13.73 8.30 -92.71 -0.77 12.96 16 46 H 0.06 2.42 8.14 -2.39 -0.02 2.40 16 47 H 0.06 2.38 8.14 -2.39 -0.02 2.36 16 48 H 0.07 2.85 6.76 -2.39 -0.02 2.83 16 49 H 0.04 1.18 7.59 -2.39 -0.02 1.16 16 50 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 51 H 0.06 1.41 6.43 -2.39 -0.02 1.39 16 52 H 0.04 1.16 7.60 -2.39 -0.02 1.14 16 Total: -1.00 -61.24 384.38 4.33 -56.90 By element: Atomic # 1 Polarization: 40.57 SS G_CDS: 0.26 Total: 40.83 kcal Atomic # 6 Polarization: -43.31 SS G_CDS: 5.07 Total: -38.24 kcal Atomic # 7 Polarization: -97.50 SS G_CDS: -3.03 Total: -100.53 kcal Atomic # 14 Polarization: 39.00 SS G_CDS: 2.03 Total: 41.03 kcal Total: -61.24 4.33 -56.90 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001160668087.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.142 kcal (2) G-P(sol) polarization free energy of solvation -61.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.904 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds