Wall clock time and date at job start Tue Mar 31 2020 10:56:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.31479 * 119.81585 * 2 1 4 4 C 1.32743 * 121.72963 * 180.02562 * 3 2 1 5 5 N 1.38374 * 119.43270 * 179.97438 * 4 3 2 6 6 C 1.46496 * 120.00651 * 179.97438 * 5 4 3 7 7 H 1.09009 * 109.46513 * 34.99548 * 6 5 4 8 8 C 1.52992 * 109.47618 * 154.99651 * 6 5 4 9 9 C 1.53002 * 109.47084 * 60.00119 * 8 6 5 10 10 C 1.53002 * 109.47265 * 60.00055 * 9 8 6 11 11 H 1.08997 * 109.46811 * 59.99810 * 10 9 8 12 12 C 1.52990 * 109.47364 * 180.02562 * 10 9 8 13 13 C 1.52999 * 109.47509 * 59.99826 * 12 10 9 14 14 C 1.53002 * 109.47364 * 179.97438 * 12 10 9 15 15 C 1.53008 * 109.46900 * 299.99574 * 12 10 9 16 16 C 1.53008 * 109.46765 * 300.00149 * 10 9 8 17 17 C 1.52999 * 109.47169 * 275.00024 * 6 5 4 18 18 C 1.39705 * 121.14086 * 0.25379 * 4 3 2 19 19 C 1.36564 * 119.49128 * 359.49010 * 18 4 3 20 20 C 1.40761 * 119.81478 * 180.02562 * 2 1 3 21 21 C 1.41201 * 120.56885 * 359.95123 * 20 2 1 22 22 H 1.08001 * 119.99992 * 24.89590 * 21 20 2 23 23 C 1.39867 * 120.00019 * 204.88825 * 21 20 2 24 24 N 1.30904 * 119.99984 * 14.71137 * 23 21 20 25 25 Si 1.86798 * 120.00107 * 194.71719 * 23 21 20 26 26 H 1.48500 * 109.47351 * 59.99865 * 25 23 21 27 27 H 1.48499 * 109.47280 * 180.02562 * 25 23 21 28 28 H 1.48509 * 109.46975 * 299.99644 * 25 23 21 29 29 H 1.09001 * 109.47396 * 90.00013 * 1 2 3 30 30 H 1.09004 * 109.47080 * 209.99869 * 1 2 3 31 31 H 1.08998 * 109.47324 * 329.99834 * 1 2 3 32 32 H 0.97008 * 119.99443 * 359.97438 * 5 4 3 33 33 H 1.08994 * 109.47350 * 300.00575 * 8 6 5 34 34 H 1.08992 * 109.47402 * 179.97438 * 8 6 5 35 35 H 1.09006 * 109.47119 * 300.00140 * 9 8 6 36 36 H 1.08993 * 109.47497 * 180.02562 * 9 8 6 37 37 H 1.08993 * 109.46886 * 60.00001 * 13 12 10 38 38 H 1.08998 * 109.47314 * 180.02562 * 13 12 10 39 39 H 1.09005 * 109.46736 * 299.99954 * 13 12 10 40 40 H 1.09006 * 109.46982 * 59.99510 * 14 12 10 41 41 H 1.08998 * 109.47082 * 179.97438 * 14 12 10 42 42 H 1.08993 * 109.46978 * 299.99966 * 14 12 10 43 43 H 1.09003 * 109.46561 * 60.00361 * 15 12 10 44 44 H 1.08997 * 109.46896 * 180.02562 * 15 12 10 45 45 H 1.08997 * 109.47179 * 300.00624 * 15 12 10 46 46 H 1.09003 * 109.46561 * 179.97438 * 16 10 9 47 47 H 1.08992 * 109.47395 * 299.99871 * 16 10 9 48 48 H 1.09006 * 109.46947 * 59.99558 * 17 6 5 49 49 H 1.08996 * 109.47465 * 179.97438 * 17 6 5 50 50 H 1.08008 * 120.25504 * 179.72341 * 18 4 3 51 51 H 1.07999 * 120.79770 * 180.26799 * 19 18 4 52 52 H 0.96997 * 119.99718 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1607 1.1408 0.0000 4 6 3.4874 1.1851 -0.0005 5 7 4.1267 2.4123 -0.0010 6 6 5.5903 2.4758 -0.0010 7 1 5.9898 1.6502 -0.5901 8 6 6.0432 3.8037 -0.6112 9 6 5.4825 4.9625 0.2156 10 6 5.9974 4.8597 1.6527 11 1 7.0863 4.9069 1.6527 12 6 5.4362 6.0181 2.4796 13 6 3.9076 5.9513 2.4796 14 6 5.9506 5.9150 3.9169 15 6 5.8887 7.3464 1.8696 16 6 5.5444 3.5317 2.2629 17 6 6.1053 2.3730 1.4360 18 6 4.2494 0.0142 -0.0064 19 6 3.6198 -1.1977 -0.0011 20 6 2.2068 -1.2213 -0.0005 21 6 1.5090 -2.4488 -0.0001 22 1 0.5043 -2.4990 -0.3931 23 6 2.1190 -3.5998 0.5092 24 7 3.2012 -3.4988 1.2389 25 14 1.3897 -5.2812 0.1481 26 1 1.3676 -5.5064 -1.3196 27 1 2.2167 -6.3295 0.7979 28 1 0.0044 -5.3443 0.6795 29 1 -0.3634 0.0000 -1.0277 30 1 -0.3633 -0.8900 0.5138 31 1 -0.3634 0.8899 0.5138 32 1 3.6057 3.2305 -0.0014 33 1 5.6764 3.8770 -1.6350 34 1 7.1321 3.8512 -0.6108 35 1 4.3934 4.9153 0.2156 36 1 5.8047 5.9085 -0.2193 37 1 3.5854 5.0051 2.9141 38 1 3.5078 6.7769 3.0684 39 1 3.5408 6.0246 1.4557 40 1 7.0396 5.9623 3.9173 41 1 5.5511 6.7405 4.5059 42 1 5.6279 4.9688 4.3512 43 1 5.5218 7.4196 0.8458 44 1 5.4892 8.1716 2.4590 45 1 6.9776 7.3939 1.8696 46 1 5.9117 3.4583 3.2866 47 1 4.4555 3.4845 2.2629 48 1 5.7826 1.4269 1.8708 49 1 7.1942 2.4198 1.4361 50 1 5.3282 0.0669 -0.0112 51 1 4.1881 -2.1161 -0.0011 52 1 3.6240 -4.2970 1.5924 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001162869717.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:56:56 Heat of formation + Delta-G solvation = -3.504957 kcal Electronic energy + Delta-G solvation = -27538.124840 eV Core-core repulsion = 24114.604890 eV Total energy + Delta-G solvation = -3423.519950 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.02080 -38.48052 -36.49766 -34.06830 -32.73391 -30.99923 -30.74144 -30.06671 -28.17964 -27.34520 -27.31927 -26.73747 -24.24181 -22.85337 -22.27271 -21.19668 -20.54607 -18.86445 -18.17635 -17.13865 -16.67993 -15.65275 -15.20444 -15.04017 -14.51726 -14.28739 -14.13507 -14.02901 -13.66045 -13.52897 -13.23400 -13.07260 -12.64643 -12.33412 -12.31037 -12.22764 -11.91069 -11.81310 -11.62596 -11.54318 -11.49014 -11.40099 -11.34697 -11.10748 -11.05107 -10.93340 -10.81371 -10.76228 -10.63596 -10.50985 -10.13081 -9.85996 -9.71180 -9.61227 -9.29504 -8.53790 -8.07201 -7.92104 -6.73142 -6.49558 -4.11824 2.80250 3.03783 3.10563 3.13850 3.35888 3.99545 4.21553 4.60710 4.65606 4.72960 4.76704 4.98168 5.11244 5.15997 5.39707 5.46434 5.47123 5.49977 5.59959 5.64873 5.68982 5.69899 5.72819 5.79054 5.82554 5.88771 5.92756 5.94636 5.98124 6.04589 6.09625 6.17983 6.24311 6.31548 6.35043 6.40435 6.44086 6.48596 6.56755 6.63321 6.65893 6.71109 6.73700 6.86531 7.11327 7.28704 7.46943 7.56610 7.85619 7.97346 8.37701 8.52041 8.75128 8.91826 9.01356 9.82280 10.30432 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.023041 B = 0.002978 C = 0.002909 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1214.909298 B = 9399.462801 C = 9623.325976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C 0.037 3.963 3 N -0.524 5.524 4 C 0.291 3.709 5 N -0.734 5.734 6 C 0.169 3.831 7 H 0.071 0.929 8 C -0.124 4.124 9 C -0.116 4.116 10 C -0.072 4.072 11 H 0.064 0.936 12 C -0.064 4.064 13 C -0.146 4.146 14 C -0.143 4.143 15 C -0.142 4.142 16 C -0.111 4.111 17 C -0.136 4.136 18 C -0.211 4.211 19 C -0.090 4.090 20 C 0.031 3.969 21 C -0.453 4.453 22 H 0.078 0.922 23 C 0.072 3.928 24 N -0.810 5.810 25 Si 0.907 3.093 26 H -0.266 1.266 27 H -0.280 1.280 28 H -0.267 1.267 29 H 0.046 0.954 30 H 0.067 0.933 31 H 0.046 0.954 32 H 0.386 0.614 33 H 0.064 0.936 34 H 0.068 0.932 35 H 0.067 0.933 36 H 0.060 0.940 37 H 0.061 0.939 38 H 0.048 0.952 39 H 0.057 0.943 40 H 0.051 0.949 41 H 0.050 0.950 42 H 0.059 0.941 43 H 0.057 0.943 44 H 0.050 0.950 45 H 0.051 0.949 46 H 0.056 0.944 47 H 0.071 0.929 48 H 0.067 0.933 49 H 0.057 0.943 50 H 0.097 0.903 51 H 0.128 0.872 52 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.207 14.569 1.407 16.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.102 4.102 3 N -0.240 5.240 4 C 0.058 3.942 5 N -0.373 5.373 6 C 0.062 3.938 7 H 0.089 0.911 8 C -0.162 4.162 9 C -0.153 4.153 10 C -0.091 4.091 11 H 0.083 0.917 12 C -0.064 4.064 13 C -0.203 4.203 14 C -0.200 4.200 15 C -0.199 4.199 16 C -0.149 4.149 17 C -0.175 4.175 18 C -0.235 4.235 19 C -0.117 4.117 20 C 0.026 3.974 21 C -0.485 4.485 22 H 0.096 0.904 23 C -0.143 4.143 24 N -0.437 5.437 25 Si 0.732 3.268 26 H -0.191 1.191 27 H -0.206 1.206 28 H -0.191 1.191 29 H 0.065 0.935 30 H 0.086 0.914 31 H 0.065 0.935 32 H 0.221 0.779 33 H 0.083 0.917 34 H 0.086 0.914 35 H 0.085 0.915 36 H 0.079 0.921 37 H 0.080 0.920 38 H 0.067 0.933 39 H 0.076 0.924 40 H 0.070 0.930 41 H 0.069 0.931 42 H 0.078 0.922 43 H 0.076 0.924 44 H 0.069 0.931 45 H 0.070 0.930 46 H 0.074 0.926 47 H 0.090 0.910 48 H 0.086 0.914 49 H 0.076 0.924 50 H 0.115 0.885 51 H 0.146 0.854 52 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 7.049 15.081 1.540 16.718 hybrid contribution 0.181 -1.384 0.012 1.396 sum 7.229 13.697 1.551 15.565 Atomic orbital electron populations 1.20243 0.91391 1.00983 1.00136 1.20710 0.94585 0.87477 1.07403 1.66321 1.07440 1.31183 1.19100 1.17728 0.88116 0.85191 1.03178 1.43738 1.03298 1.04582 1.85686 1.20554 0.81609 0.96715 0.94958 0.91140 1.21787 1.00560 0.94660 0.99230 1.21667 1.01089 0.97733 0.94847 1.21156 0.99441 0.94158 0.94315 0.91720 1.20535 0.95800 0.94927 0.95175 1.21981 0.94558 1.01807 1.01924 1.21921 1.00575 1.01762 0.95740 1.21923 1.00771 0.96422 1.00796 1.21594 1.01884 0.93238 0.98147 1.22036 0.99282 0.99242 0.96939 1.20831 0.98178 0.92909 1.11564 1.21338 0.94913 0.96270 0.99186 1.18141 0.92219 0.93017 0.94050 1.19301 1.01263 0.92021 1.35899 0.90403 1.25840 0.94517 1.01097 0.92845 1.69801 1.17849 1.31205 1.24837 0.86395 0.79760 0.81019 0.79655 1.19055 1.20561 1.19130 0.93535 0.91433 0.93523 0.77913 0.91712 0.91374 0.91497 0.92105 0.92037 0.93307 0.92357 0.93001 0.93127 0.92202 0.92385 0.93120 0.93001 0.92560 0.91000 0.91412 0.92409 0.88525 0.85438 0.91148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.51 9.58 36.00 0.34 -1.16 16 2 C 0.04 0.92 6.86 -81.79 -0.56 0.36 16 3 N -0.52 -12.80 10.29 -8.04 -0.08 -12.89 16 4 C 0.29 6.56 7.62 -155.12 -1.18 5.37 16 5 N -0.73 -13.01 4.38 -53.87 -0.24 -13.25 16 6 C 0.17 2.46 2.46 -67.94 -0.17 2.29 16 7 H 0.07 1.11 6.40 -51.92 -0.33 0.78 16 8 C -0.12 -1.43 5.61 -26.73 -0.15 -1.58 16 9 C -0.12 -1.23 4.33 -26.73 -0.12 -1.35 16 10 C -0.07 -0.76 1.55 -90.62 -0.14 -0.90 16 11 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 12 C -0.06 -0.62 0.57 -154.51 -0.09 -0.71 16 13 C -0.15 -1.52 7.77 37.16 0.29 -1.24 16 14 C -0.14 -1.33 8.12 37.16 0.30 -1.03 16 15 C -0.14 -1.21 8.12 37.16 0.30 -0.91 16 16 C -0.11 -1.41 4.34 -26.73 -0.12 -1.53 16 17 C -0.14 -1.89 5.51 -26.73 -0.15 -2.04 16 18 C -0.21 -4.91 8.74 -39.64 -0.35 -5.26 16 19 C -0.09 -2.35 8.73 -39.02 -0.34 -2.69 16 20 C 0.03 0.82 5.59 -106.65 -0.60 0.23 16 21 C -0.45 -11.90 8.16 -37.85 -0.31 -12.21 16 22 H 0.08 1.95 6.84 -52.49 -0.36 1.59 16 23 C 0.07 1.81 5.22 -17.34 -0.09 1.72 16 24 N -0.81 -20.98 10.83 55.54 0.60 -20.38 16 25 Si 0.91 18.83 29.58 -169.99 -5.03 13.80 16 26 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 27 H -0.28 -5.71 7.11 56.52 0.40 -5.31 16 28 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 29 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 30 H 0.07 1.44 6.75 -51.93 -0.35 1.09 16 31 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 32 H 0.39 6.60 6.98 -40.82 -0.29 6.31 16 33 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.07 0.79 4.79 -51.93 -0.25 0.54 16 36 H 0.06 0.58 6.43 -51.93 -0.33 0.24 16 37 H 0.06 0.73 6.43 -51.93 -0.33 0.39 16 38 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.06 0.62 6.43 -51.93 -0.33 0.28 16 40 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 41 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 42 H 0.06 0.60 6.43 -51.93 -0.33 0.26 16 43 H 0.06 0.49 6.43 -51.93 -0.33 0.15 16 44 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 45 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 46 H 0.06 0.69 6.43 -51.93 -0.33 0.36 16 47 H 0.07 1.06 5.89 -51.93 -0.31 0.76 16 48 H 0.07 1.13 7.65 -51.93 -0.40 0.74 16 49 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 50 H 0.10 2.02 6.01 -52.48 -0.32 1.70 16 51 H 0.13 3.40 6.17 -52.49 -0.32 3.07 16 52 H 0.28 6.63 8.30 -40.82 -0.34 6.29 16 LS Contribution 379.19 15.07 5.71 5.71 Total: -1.00 -27.42 379.19 -10.85 -38.27 By element: Atomic # 1 Polarization: 20.04 SS G_CDS: -8.71 Total: 11.33 kcal Atomic # 6 Polarization: -19.50 SS G_CDS: -3.11 Total: -22.61 kcal Atomic # 7 Polarization: -46.79 SS G_CDS: 0.28 Total: -46.51 kcal Atomic # 14 Polarization: 18.83 SS G_CDS: -5.03 Total: 13.80 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -27.42 -10.85 -38.27 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001162869717.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.767 kcal (2) G-P(sol) polarization free energy of solvation -27.421 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.346 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.851 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.272 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds