Wall clock time and date at job start Tue Mar 31 2020 10:56:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.31479 * 119.81585 * 2 1 4 4 C 1.32743 * 121.72963 * 180.02562 * 3 2 1 5 5 N 1.38374 * 119.43270 * 179.97438 * 4 3 2 6 6 C 1.46496 * 120.00651 * 179.97438 * 5 4 3 7 7 H 1.09009 * 109.46513 * 34.99548 * 6 5 4 8 8 C 1.52992 * 109.47618 * 154.99651 * 6 5 4 9 9 C 1.53002 * 109.47084 * 60.00119 * 8 6 5 10 10 C 1.53002 * 109.47265 * 60.00055 * 9 8 6 11 11 H 1.08997 * 109.46811 * 59.99810 * 10 9 8 12 12 C 1.52990 * 109.47364 * 180.02562 * 10 9 8 13 13 C 1.52999 * 109.47509 * 59.99826 * 12 10 9 14 14 C 1.53002 * 109.47364 * 179.97438 * 12 10 9 15 15 C 1.53008 * 109.46900 * 299.99574 * 12 10 9 16 16 C 1.53008 * 109.46765 * 300.00149 * 10 9 8 17 17 C 1.52999 * 109.47169 * 275.00024 * 6 5 4 18 18 C 1.39705 * 121.14086 * 0.25379 * 4 3 2 19 19 C 1.36564 * 119.49128 * 359.49010 * 18 4 3 20 20 C 1.40761 * 119.81478 * 180.02562 * 2 1 3 21 21 C 1.41201 * 120.56885 * 359.95123 * 20 2 1 22 22 H 1.08001 * 119.99992 * 24.89590 * 21 20 2 23 23 C 1.39867 * 120.00019 * 204.88825 * 21 20 2 24 24 N 1.30904 * 119.99984 * 14.71137 * 23 21 20 25 25 Si 1.86798 * 120.00107 * 194.71719 * 23 21 20 26 26 H 1.48500 * 109.47351 * 59.99865 * 25 23 21 27 27 H 1.48499 * 109.47280 * 180.02562 * 25 23 21 28 28 H 1.48509 * 109.46975 * 299.99644 * 25 23 21 29 29 H 1.09001 * 109.47396 * 90.00013 * 1 2 3 30 30 H 1.09004 * 109.47080 * 209.99869 * 1 2 3 31 31 H 1.08998 * 109.47324 * 329.99834 * 1 2 3 32 32 H 0.97008 * 119.99443 * 359.97438 * 5 4 3 33 33 H 1.08994 * 109.47350 * 300.00575 * 8 6 5 34 34 H 1.08992 * 109.47402 * 179.97438 * 8 6 5 35 35 H 1.09006 * 109.47119 * 300.00140 * 9 8 6 36 36 H 1.08993 * 109.47497 * 180.02562 * 9 8 6 37 37 H 1.08993 * 109.46886 * 60.00001 * 13 12 10 38 38 H 1.08998 * 109.47314 * 180.02562 * 13 12 10 39 39 H 1.09005 * 109.46736 * 299.99954 * 13 12 10 40 40 H 1.09006 * 109.46982 * 59.99510 * 14 12 10 41 41 H 1.08998 * 109.47082 * 179.97438 * 14 12 10 42 42 H 1.08993 * 109.46978 * 299.99966 * 14 12 10 43 43 H 1.09003 * 109.46561 * 60.00361 * 15 12 10 44 44 H 1.08997 * 109.46896 * 180.02562 * 15 12 10 45 45 H 1.08997 * 109.47179 * 300.00624 * 15 12 10 46 46 H 1.09003 * 109.46561 * 179.97438 * 16 10 9 47 47 H 1.08992 * 109.47395 * 299.99871 * 16 10 9 48 48 H 1.09006 * 109.46947 * 59.99558 * 17 6 5 49 49 H 1.08996 * 109.47465 * 179.97438 * 17 6 5 50 50 H 1.08008 * 120.25504 * 179.72341 * 18 4 3 51 51 H 1.07999 * 120.79770 * 180.26799 * 19 18 4 52 52 H 0.96997 * 119.99718 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1607 1.1408 0.0000 4 6 3.4874 1.1851 -0.0005 5 7 4.1267 2.4123 -0.0010 6 6 5.5903 2.4758 -0.0010 7 1 5.9898 1.6502 -0.5901 8 6 6.0432 3.8037 -0.6112 9 6 5.4825 4.9625 0.2156 10 6 5.9974 4.8597 1.6527 11 1 7.0863 4.9069 1.6527 12 6 5.4362 6.0181 2.4796 13 6 3.9076 5.9513 2.4796 14 6 5.9506 5.9150 3.9169 15 6 5.8887 7.3464 1.8696 16 6 5.5444 3.5317 2.2629 17 6 6.1053 2.3730 1.4360 18 6 4.2494 0.0142 -0.0064 19 6 3.6198 -1.1977 -0.0011 20 6 2.2068 -1.2213 -0.0005 21 6 1.5090 -2.4488 -0.0001 22 1 0.5043 -2.4990 -0.3931 23 6 2.1190 -3.5998 0.5092 24 7 3.2012 -3.4988 1.2389 25 14 1.3897 -5.2812 0.1481 26 1 1.3676 -5.5064 -1.3196 27 1 2.2167 -6.3295 0.7979 28 1 0.0044 -5.3443 0.6795 29 1 -0.3634 0.0000 -1.0277 30 1 -0.3633 -0.8900 0.5138 31 1 -0.3634 0.8899 0.5138 32 1 3.6057 3.2305 -0.0014 33 1 5.6764 3.8770 -1.6350 34 1 7.1321 3.8512 -0.6108 35 1 4.3934 4.9153 0.2156 36 1 5.8047 5.9085 -0.2193 37 1 3.5854 5.0051 2.9141 38 1 3.5078 6.7769 3.0684 39 1 3.5408 6.0246 1.4557 40 1 7.0396 5.9623 3.9173 41 1 5.5511 6.7405 4.5059 42 1 5.6279 4.9688 4.3512 43 1 5.5218 7.4196 0.8458 44 1 5.4892 8.1716 2.4590 45 1 6.9776 7.3939 1.8696 46 1 5.9117 3.4583 3.2866 47 1 4.4555 3.4845 2.2629 48 1 5.7826 1.4269 1.8708 49 1 7.1942 2.4198 1.4361 50 1 5.3282 0.0669 -0.0112 51 1 4.1881 -2.1161 -0.0011 52 1 3.6240 -4.2970 1.5924 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001162869717.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:56:55 Heat of formation + Delta-G solvation = -15.038520 kcal Electronic energy + Delta-G solvation = -27538.624973 eV Core-core repulsion = 24114.604890 eV Total energy + Delta-G solvation = -3424.020083 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.14764 -40.14486 -37.68873 -35.81720 -34.28383 -32.75833 -31.85267 -31.63768 -29.45320 -28.56238 -28.14683 -28.04965 -26.07184 -23.91359 -23.34908 -22.97932 -22.16163 -20.08617 -19.17267 -18.97585 -18.27863 -16.93403 -16.74843 -16.50957 -15.72393 -15.58700 -15.39537 -14.96528 -14.92866 -14.81040 -14.72743 -14.37400 -13.97294 -13.69425 -13.58313 -13.41734 -13.22969 -13.17522 -13.04182 -12.95933 -12.77211 -12.61332 -12.58432 -12.51157 -12.46407 -12.19890 -12.00439 -11.94818 -11.69885 -11.58662 -11.48240 -11.17090 -11.04811 -10.79691 -10.68110 -10.25721 -9.94435 -9.84108 -8.58997 -8.29892 -6.05868 0.92610 1.17949 1.41435 1.51854 1.60195 2.26011 2.72502 2.87495 3.73415 3.76080 3.82024 3.86556 4.08012 4.15647 4.18124 4.29113 4.43019 4.48234 4.59673 4.60254 4.63665 4.69818 4.71610 4.74695 4.79499 4.83149 4.89515 4.93336 4.98381 5.00692 5.04126 5.06229 5.13040 5.16092 5.16912 5.20253 5.23868 5.29332 5.32227 5.33710 5.40204 5.45686 5.47010 5.55046 5.59601 5.67404 5.70955 5.76841 5.96470 6.05160 6.55835 6.73679 6.91210 7.00003 7.23755 7.94244 8.45189 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.023041 B = 0.002978 C = 0.002909 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1214.909298 B = 9399.462801 C = 9623.325976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C 0.022 3.978 3 N -0.540 5.540 4 C 0.298 3.702 5 N -0.721 5.721 6 C 0.162 3.838 7 H 0.060 0.940 8 C -0.116 4.116 9 C -0.113 4.113 10 C -0.065 4.065 11 H 0.078 0.922 12 C -0.062 4.062 13 C -0.145 4.145 14 C -0.142 4.142 15 C -0.139 4.139 16 C -0.106 4.106 17 C -0.132 4.132 18 C -0.217 4.217 19 C -0.109 4.109 20 C -0.005 4.005 21 C -0.482 4.482 22 H 0.081 0.919 23 C 0.030 3.970 24 N -0.843 5.843 25 Si 0.979 3.021 26 H -0.262 1.262 27 H -0.273 1.273 28 H -0.260 1.260 29 H 0.061 0.939 30 H 0.064 0.936 31 H 0.058 0.942 32 H 0.392 0.608 33 H 0.064 0.936 34 H 0.092 0.908 35 H 0.053 0.947 36 H 0.082 0.918 37 H 0.040 0.960 38 H 0.055 0.945 39 H 0.055 0.945 40 H 0.060 0.940 41 H 0.056 0.944 42 H 0.046 0.954 43 H 0.060 0.940 44 H 0.055 0.945 45 H 0.060 0.940 46 H 0.058 0.942 47 H 0.046 0.954 48 H 0.032 0.968 49 H 0.082 0.918 50 H 0.116 0.884 51 H 0.113 0.887 52 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.175 16.252 1.015 18.221 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.116 4.116 3 N -0.257 5.257 4 C 0.064 3.936 5 N -0.360 5.360 6 C 0.057 3.943 7 H 0.078 0.922 8 C -0.154 4.154 9 C -0.150 4.150 10 C -0.083 4.083 11 H 0.097 0.903 12 C -0.062 4.062 13 C -0.202 4.202 14 C -0.199 4.199 15 C -0.196 4.196 16 C -0.144 4.144 17 C -0.171 4.171 18 C -0.241 4.241 19 C -0.136 4.136 20 C -0.010 4.010 21 C -0.514 4.514 22 H 0.099 0.901 23 C -0.182 4.182 24 N -0.471 5.471 25 Si 0.801 3.199 26 H -0.187 1.187 27 H -0.198 1.198 28 H -0.184 1.184 29 H 0.080 0.920 30 H 0.083 0.917 31 H 0.077 0.923 32 H 0.227 0.773 33 H 0.083 0.917 34 H 0.110 0.890 35 H 0.071 0.929 36 H 0.100 0.900 37 H 0.059 0.941 38 H 0.074 0.926 39 H 0.074 0.926 40 H 0.079 0.921 41 H 0.075 0.925 42 H 0.065 0.935 43 H 0.079 0.921 44 H 0.074 0.926 45 H 0.079 0.921 46 H 0.077 0.923 47 H 0.065 0.935 48 H 0.051 0.949 49 H 0.101 0.899 50 H 0.134 0.866 51 H 0.131 0.869 52 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 8.035 16.809 1.148 18.666 hybrid contribution -0.041 -1.759 0.167 1.767 sum 7.994 15.050 1.315 17.092 Atomic orbital electron populations 1.20223 0.89226 1.01418 1.01193 1.21257 0.96360 0.87360 1.06638 1.66472 1.08185 1.30848 1.20237 1.18077 0.87902 0.86740 1.00914 1.43873 1.04774 1.03058 1.84261 1.20815 0.79421 0.98549 0.95556 0.92227 1.21749 1.01989 0.92686 0.98947 1.21654 1.00217 0.98306 0.94815 1.21102 1.00134 0.92918 0.94145 0.90346 1.20515 0.94904 0.95395 0.95367 1.21968 0.95565 1.00954 1.01693 1.21913 1.01169 1.01341 0.95521 1.21888 1.01376 0.95470 1.00839 1.21527 1.00182 0.94252 0.98389 1.21980 1.00761 0.98046 0.96282 1.20985 0.99235 0.92479 1.11403 1.21353 0.95118 0.96678 1.00408 1.18477 0.92791 0.94067 0.95669 1.19524 1.01781 0.92830 1.37223 0.90117 1.26672 0.94815 1.04620 0.92088 1.69877 1.19159 1.32414 1.25659 0.85293 0.79111 0.76091 0.79440 1.18696 1.19782 1.18393 0.92046 0.91673 0.92266 0.77295 0.91684 0.88955 0.92868 0.89957 0.94099 0.92581 0.92576 0.92067 0.92513 0.93487 0.92126 0.92640 0.92065 0.92325 0.93536 0.94937 0.89944 0.86639 0.86899 0.90680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -2.73 9.58 71.23 0.68 -2.05 16 2 C 0.02 1.12 6.86 43.23 0.30 1.41 16 3 N -0.54 -26.76 10.29 -179.36 -1.85 -28.61 16 4 C 0.30 13.65 7.62 133.31 1.02 14.67 16 5 N -0.72 -25.41 4.38 -324.34 -1.42 -26.83 16 6 C 0.16 4.55 2.46 44.99 0.11 4.66 16 7 H 0.06 1.82 6.40 -2.38 -0.02 1.81 16 8 C -0.12 -2.35 5.61 30.59 0.17 -2.18 16 9 C -0.11 -2.08 4.33 30.60 0.13 -1.95 16 10 C -0.06 -1.19 1.55 -10.79 -0.02 -1.21 16 11 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 12 C -0.06 -1.05 0.57 -52.18 -0.03 -1.08 16 13 C -0.14 -2.88 7.77 71.98 0.56 -2.32 16 14 C -0.14 -2.37 8.12 71.98 0.58 -1.78 16 15 C -0.14 -1.91 8.12 71.98 0.58 -1.32 16 16 C -0.11 -2.60 4.34 30.60 0.13 -2.47 16 17 C -0.13 -3.56 5.51 30.59 0.17 -3.39 16 18 C -0.22 -10.39 8.74 22.23 0.19 -10.20 16 19 C -0.11 -5.88 8.73 22.64 0.20 -5.68 16 20 C 0.00 -0.27 5.59 -21.18 -0.12 -0.39 16 21 C -0.48 -26.05 8.16 23.39 0.19 -25.86 16 22 H 0.08 4.14 6.84 -2.91 -0.02 4.12 16 23 C 0.03 1.54 5.22 85.23 0.45 1.98 16 24 N -0.84 -45.05 10.83 21.82 0.24 -44.82 16 25 Si 0.98 39.02 29.58 68.60 2.03 41.05 16 26 H -0.26 -10.23 7.11 99.48 0.71 -9.52 16 27 H -0.27 -10.44 7.11 99.48 0.71 -9.73 16 28 H -0.26 -9.98 7.11 99.48 0.71 -9.27 16 29 H 0.06 2.44 8.14 -2.39 -0.02 2.42 16 30 H 0.06 2.81 6.75 -2.38 -0.02 2.80 16 31 H 0.06 2.36 8.14 -2.39 -0.02 2.34 16 32 H 0.39 13.20 6.98 -92.70 -0.65 12.55 16 33 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 34 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 35 H 0.05 1.15 4.79 -2.38 -0.01 1.14 16 36 H 0.08 1.24 6.43 -2.39 -0.02 1.22 16 37 H 0.04 0.97 6.43 -2.39 -0.02 0.95 16 38 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 39 H 0.06 1.12 6.43 -2.38 -0.02 1.11 16 40 H 0.06 0.90 8.14 -2.38 -0.02 0.89 16 41 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 42 H 0.05 0.89 6.43 -2.39 -0.02 0.88 16 43 H 0.06 0.81 6.43 -2.39 -0.02 0.79 16 44 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 45 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 46 H 0.06 1.40 6.43 -2.39 -0.02 1.39 16 47 H 0.05 1.38 5.89 -2.39 -0.01 1.37 16 48 H 0.03 1.10 7.65 -2.38 -0.02 1.08 16 49 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 50 H 0.12 4.94 6.01 -2.91 -0.02 4.92 16 51 H 0.11 6.33 6.17 -2.91 -0.02 6.32 16 52 H 0.28 13.84 8.30 -92.71 -0.77 13.07 16 Total: -1.00 -61.10 379.19 4.57 -56.53 By element: Atomic # 1 Polarization: 41.56 SS G_CDS: 0.27 Total: 41.83 kcal Atomic # 6 Polarization: -44.46 SS G_CDS: 5.30 Total: -39.16 kcal Atomic # 7 Polarization: -97.22 SS G_CDS: -3.03 Total: -100.25 kcal Atomic # 14 Polarization: 39.02 SS G_CDS: 2.03 Total: 41.05 kcal Total: -61.10 4.57 -56.53 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001162869717.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.493 kcal (2) G-P(sol) polarization free energy of solvation -61.102 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.609 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.531 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds