Wall clock time and date at job start Tue Mar 31 2020 10:54:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.54575 * 1 3 3 C 1.53135 * 107.17255 * 2 1 4 4 C 1.52673 * 107.41648 * 242.08070 * 2 1 3 5 5 C 1.52791 * 110.64866 * 191.71910 * 4 2 1 6 6 N 1.47262 * 109.21504 * 178.05977 * 5 4 2 7 7 C 1.52880 * 108.73736 * 59.01794 * 5 4 2 8 8 C 1.52887 * 110.05219 * 299.73645 * 7 5 4 9 9 C 1.52985 * 109.95761 * 286.96462 * 8 7 5 10 10 C 1.54514 * 107.40002 * 170.46777 * 8 7 5 11 11 N 1.45106 * 107.91589 * 120.35793 * 2 1 3 12 12 C 1.39673 * 112.04018 * 295.72538 * 11 2 1 13 13 C 1.38914 * 120.07123 * 294.15808 * 12 11 2 14 14 C 1.38108 * 119.92137 * 179.76540 * 13 12 11 15 15 C 1.38290 * 120.07161 * 0.50327 * 14 13 12 16 16 C 1.50703 * 119.91939 * 179.76466 * 15 14 13 17 17 C 1.50697 * 109.47202 * 269.97890 * 16 15 14 18 18 H 1.07997 * 120.00176 * 0.02562 * 17 16 15 19 19 C 1.37882 * 119.99795 * 180.02562 * 17 16 15 20 20 N 1.31515 * 119.99773 * 0.02562 * 19 17 16 21 21 Si 1.86797 * 119.99986 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.46910 * 60.00173 * 21 19 17 23 23 H 1.48500 * 109.47347 * 180.02562 * 21 19 17 24 24 H 1.48501 * 109.47096 * 300.00421 * 21 19 17 25 25 C 1.38281 * 120.15115 * 359.74870 * 15 14 13 26 26 C 1.38105 * 120.07821 * 359.97438 * 25 15 14 27 27 H 1.08999 * 109.47505 * 296.61145 * 1 2 3 28 28 H 1.09001 * 109.47227 * 176.60838 * 1 2 3 29 29 H 1.09000 * 109.47291 * 56.61514 * 1 2 3 30 30 H 1.09004 * 109.47320 * 54.98103 * 3 2 1 31 31 H 1.09000 * 109.47275 * 174.97754 * 3 2 1 32 32 H 1.09007 * 109.47563 * 294.98283 * 3 2 1 33 33 H 1.09292 * 109.36320 * 312.22591 * 4 2 1 34 34 H 1.09266 * 109.39760 * 71.15434 * 4 2 1 35 35 H 1.08717 * 110.38613 * 297.70711 * 5 4 2 36 36 H 1.00900 * 110.99860 * 61.22597 * 6 5 4 37 37 H 1.00899 * 110.99991 * 185.18759 * 6 5 4 38 38 H 1.09166 * 109.44223 * 179.50695 * 7 5 4 39 39 H 1.09143 * 109.47847 * 60.03839 * 7 5 4 40 40 H 1.08998 * 109.46884 * 189.47960 * 9 8 7 41 41 H 1.08994 * 109.46859 * 309.48803 * 9 8 7 42 42 H 1.09002 * 109.47170 * 69.48425 * 9 8 7 43 43 H 1.09006 * 109.47040 * 301.49098 * 10 8 7 44 44 H 1.08999 * 109.46973 * 61.48698 * 10 8 7 45 45 H 1.09000 * 109.47173 * 181.48926 * 10 8 7 46 46 H 1.07997 * 120.03611 * 359.97438 * 13 12 11 47 47 H 1.07994 * 119.96099 * 180.24748 * 14 13 12 48 48 H 1.08997 * 109.47394 * 29.98438 * 16 15 14 49 49 H 1.08997 * 109.46468 * 149.97987 * 16 15 14 50 50 H 0.96999 * 119.99443 * 179.97438 * 20 19 17 51 51 H 1.08002 * 119.96031 * 179.97438 * 25 15 14 52 52 H 1.07994 * 120.03847 * 180.02562 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5458 0.0000 0.0000 3 6 1.9979 1.4631 0.0000 4 6 2.0027 -0.6821 -1.2872 5 6 3.4998 -0.9832 -1.2352 6 7 3.8969 -1.6811 -2.4697 7 6 3.7772 -1.8887 -0.0351 8 6 3.3563 -1.1894 1.2577 9 6 4.3484 -0.0749 1.5953 10 6 3.4326 -2.2337 2.3939 11 7 1.9921 -0.6978 1.1914 12 6 1.6187 -0.0308 2.3604 13 6 2.1562 1.2164 2.6521 14 6 1.7811 1.8753 3.8065 15 6 0.8793 1.2902 4.6765 16 6 0.4764 2.0100 5.9377 17 6 1.4148 1.6306 7.0542 18 1 2.2224 0.9380 6.8690 19 6 1.2422 2.1679 8.3123 20 7 0.2584 3.0109 8.5379 21 14 2.4049 1.6971 9.6964 22 1 3.7918 2.0806 9.3297 23 1 2.0072 2.4055 10.9395 24 1 2.3396 0.2305 9.9205 25 6 0.3463 0.0465 4.3916 26 6 0.7127 -0.6154 3.2362 27 1 -0.3634 0.4603 0.9188 28 1 -0.3634 -1.0259 -0.0608 29 1 -0.3634 0.5655 -0.8581 30 1 1.5417 1.9844 0.8416 31 1 3.0832 1.5080 0.0900 32 1 1.6905 1.9385 -0.9315 33 1 1.4500 -1.6158 -1.4185 34 1 1.7937 -0.0290 -2.1379 35 1 4.0691 -0.0605 -1.1545 36 1 3.7251 -1.1065 -3.2811 37 1 4.8633 -1.9682 -2.4278 38 1 4.8435 -2.1185 0.0079 39 1 3.2165 -2.8188 -0.1437 40 1 4.1412 0.3052 2.5956 41 1 5.3639 -0.4693 1.5594 42 1 4.2469 0.7336 0.8712 43 1 2.7799 -3.0746 2.1589 44 1 4.4588 -2.5873 2.4941 45 1 3.1129 -1.7761 3.3301 46 1 2.8641 1.6717 1.9754 47 1 2.1956 2.8468 4.0319 48 1 0.5241 3.0864 5.7729 49 1 -0.5415 1.7285 6.2072 50 1 0.1368 3.3886 9.4231 51 1 -0.3574 -0.4078 5.0734 52 1 0.2957 -1.5865 3.0141 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001167624946.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:54:13 Heat of formation + Delta-G solvation = 31.059077 kcal Electronic energy + Delta-G solvation = -28436.037974 eV Core-core repulsion = 25014.016833 eV Total energy + Delta-G solvation = -3422.021141 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.17341 -38.09763 -35.48016 -35.13309 -33.21060 -31.51865 -30.69278 -29.44340 -28.50172 -27.66594 -26.57116 -26.40138 -26.16045 -23.11269 -21.77293 -21.28421 -20.67166 -20.10460 -18.25386 -16.39591 -16.35246 -16.28093 -15.55670 -15.15637 -15.06346 -14.80870 -14.27745 -14.11814 -13.72197 -13.52283 -13.45950 -13.23017 -13.09440 -12.61752 -12.57200 -12.44622 -12.16405 -11.84773 -11.72496 -11.60955 -11.58800 -11.48046 -11.31101 -11.25208 -11.15580 -11.06488 -10.67215 -10.65343 -10.61204 -10.32437 -10.19885 -10.05041 -9.47857 -9.40760 -8.95327 -8.41965 -8.16244 -8.03195 -7.57752 -6.03917 -4.07720 2.04735 2.11920 3.31597 3.35736 3.38931 3.74217 4.12136 4.35899 4.51702 4.61778 4.62691 4.92747 4.96537 4.99184 5.14622 5.26126 5.30368 5.33728 5.38202 5.49792 5.55470 5.57404 5.64684 5.69663 5.77180 5.78852 5.81371 5.92304 5.93094 5.96772 5.99989 6.03265 6.06473 6.07375 6.17575 6.26292 6.34168 6.38446 6.40204 6.45279 6.51589 6.69901 6.86457 7.13903 7.14496 7.20884 7.22927 7.46052 7.57413 7.59065 7.88508 7.91932 7.99652 8.32962 8.97422 9.55938 11.05827 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.022923 B = 0.003404 C = 0.003204 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1221.175027 B = 8223.886181 C = 8735.687778 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.147 3.853 3 C -0.194 4.194 4 C -0.098 4.098 5 C 0.090 3.910 6 N -0.849 5.849 7 C -0.099 4.099 8 C 0.146 3.854 9 C -0.189 4.189 10 C -0.143 4.143 11 N -0.520 5.520 12 C 0.079 3.921 13 C -0.150 4.150 14 C -0.126 4.126 15 C -0.032 4.032 16 C 0.048 3.952 17 C -0.510 4.510 18 H 0.056 0.944 19 C 0.058 3.942 20 N -0.895 5.895 21 Si 0.895 3.105 22 H -0.277 1.277 23 H -0.287 1.287 24 H -0.276 1.276 25 C -0.125 4.125 26 C -0.097 4.097 27 H 0.062 0.938 28 H 0.059 0.941 29 H 0.052 0.948 30 H 0.077 0.923 31 H 0.057 0.943 32 H 0.053 0.947 33 H 0.076 0.924 34 H 0.062 0.938 35 H 0.035 0.965 36 H 0.338 0.662 37 H 0.339 0.661 38 H 0.063 0.937 39 H 0.077 0.923 40 H 0.074 0.926 41 H 0.054 0.946 42 H 0.056 0.944 43 H 0.058 0.942 44 H 0.053 0.947 45 H 0.064 0.936 46 H 0.120 0.880 47 H 0.113 0.887 48 H 0.026 0.974 49 H 0.028 0.972 50 H 0.262 0.738 51 H 0.117 0.883 52 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.824 -7.463 -21.052 23.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.058 3.942 3 C -0.253 4.253 4 C -0.136 4.136 5 C -0.021 4.021 6 N -0.378 5.378 7 C -0.137 4.137 8 C 0.058 3.942 9 C -0.248 4.248 10 C -0.200 4.200 11 N -0.241 5.241 12 C -0.013 4.013 13 C -0.170 4.170 14 C -0.145 4.145 15 C -0.032 4.032 16 C 0.011 3.989 17 C -0.549 4.549 18 H 0.074 0.926 19 C -0.143 4.143 20 N -0.534 5.534 21 Si 0.722 3.278 22 H -0.202 1.202 23 H -0.212 1.212 24 H -0.201 1.201 25 C -0.144 4.144 26 C -0.116 4.116 27 H 0.081 0.919 28 H 0.078 0.922 29 H 0.071 0.929 30 H 0.096 0.904 31 H 0.075 0.925 32 H 0.072 0.928 33 H 0.095 0.905 34 H 0.081 0.919 35 H 0.053 0.947 36 H 0.151 0.849 37 H 0.151 0.849 38 H 0.081 0.919 39 H 0.096 0.904 40 H 0.092 0.908 41 H 0.073 0.927 42 H 0.075 0.925 43 H 0.078 0.922 44 H 0.072 0.928 45 H 0.083 0.917 46 H 0.137 0.863 47 H 0.131 0.869 48 H 0.045 0.955 49 H 0.046 0.954 50 H 0.072 0.928 51 H 0.135 0.865 52 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 4.975 -8.272 -20.769 22.902 hybrid contribution 1.816 1.329 0.754 2.373 sum 6.790 -6.943 -20.015 22.247 Atomic orbital electron populations 1.22276 0.93857 1.01986 1.01762 1.20411 0.95220 0.90664 0.87936 1.23156 1.01407 0.98009 1.02686 1.21597 0.94867 1.01247 0.95887 1.21276 0.96019 0.94816 0.89959 1.58840 1.27279 1.47462 1.04240 1.21653 1.00880 0.99035 0.92135 1.20441 0.85034 0.93829 0.94945 1.22942 0.99293 0.99536 1.03019 1.22283 1.00861 0.98449 0.98443 1.54789 1.21300 1.47556 1.00464 1.17952 0.99306 0.92511 0.91546 1.22013 1.00925 0.96113 0.97933 1.20962 0.98960 1.00342 0.94199 1.20675 0.92775 0.93953 0.95757 1.18345 0.97128 0.95178 0.88274 1.21015 1.13425 1.26743 0.93681 0.92578 1.25009 0.95562 0.95059 0.98694 1.69948 1.30569 1.30444 1.22405 0.86611 0.81200 0.78719 0.81243 1.20215 1.21246 1.20143 1.21009 1.01369 0.95381 0.96602 1.20950 0.97386 0.99360 0.93930 0.91937 0.92238 0.92862 0.90404 0.92478 0.92795 0.90499 0.91918 0.94695 0.84945 0.84874 0.91875 0.90416 0.90758 0.92707 0.92546 0.92244 0.92836 0.91736 0.86276 0.86865 0.95526 0.95414 0.92810 0.86468 0.86786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.65 8.19 37.99 0.31 -1.34 16 2 C 0.15 1.67 0.65 -131.84 -0.09 1.59 16 3 C -0.19 -2.22 6.47 37.23 0.24 -1.98 16 4 C -0.10 -0.97 4.24 -27.01 -0.11 -1.09 16 5 C 0.09 0.84 3.08 -67.68 -0.21 0.63 16 6 N -0.85 -6.62 9.24 -4.69 -0.04 -6.67 16 7 C -0.10 -1.00 4.21 -26.85 -0.11 -1.11 16 8 C 0.15 1.72 0.63 -131.81 -0.08 1.64 16 9 C -0.19 -2.27 6.54 37.15 0.24 -2.03 16 10 C -0.14 -1.77 8.11 37.95 0.31 -1.46 16 11 N -0.52 -6.65 3.43 -142.57 -0.49 -7.13 16 12 C 0.08 1.21 1.96 -83.79 -0.16 1.04 16 13 C -0.15 -2.42 4.81 -39.38 -0.19 -2.61 16 14 C -0.13 -2.41 9.69 -39.61 -0.38 -2.80 16 15 C -0.03 -0.67 5.07 -104.59 -0.53 -1.20 16 16 C 0.05 1.22 5.10 -29.04 -0.15 1.07 16 17 C -0.51 -14.26 9.09 -34.44 -0.31 -14.57 16 18 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 19 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 20 N -0.89 -26.44 13.29 55.43 0.74 -25.71 16 21 Si 0.89 21.57 29.54 -169.99 -5.02 16.55 16 22 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 23 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 24 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 25 C -0.12 -2.40 9.69 -39.61 -0.38 -2.78 16 26 C -0.10 -1.60 9.08 -39.38 -0.36 -1.96 16 27 H 0.06 0.85 6.99 -51.93 -0.36 0.49 16 28 H 0.06 0.69 8.09 -51.93 -0.42 0.27 16 29 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.08 1.03 5.39 -51.93 -0.28 0.75 16 31 H 0.06 0.64 4.21 -51.93 -0.22 0.43 16 32 H 0.05 0.54 8.00 -51.93 -0.42 0.13 16 33 H 0.08 0.84 8.02 -51.76 -0.42 0.42 16 34 H 0.06 0.56 7.98 -51.78 -0.41 0.15 16 35 H 0.04 0.34 6.66 -52.09 -0.35 -0.01 16 36 H 0.34 2.20 9.05 -39.29 -0.36 1.84 16 37 H 0.34 2.23 8.99 -39.29 -0.35 1.88 16 38 H 0.06 0.58 8.01 -51.84 -0.42 0.16 16 39 H 0.08 0.86 8.06 -51.85 -0.42 0.44 16 40 H 0.07 1.06 5.83 -51.93 -0.30 0.75 16 41 H 0.05 0.59 8.02 -51.93 -0.42 0.17 16 42 H 0.06 0.65 4.15 -51.93 -0.22 0.44 16 43 H 0.06 0.72 8.11 -51.93 -0.42 0.30 16 44 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 45 H 0.06 0.95 6.74 -51.93 -0.35 0.60 16 46 H 0.12 1.73 3.99 -52.49 -0.21 1.52 16 47 H 0.11 2.16 8.06 -52.49 -0.42 1.74 16 48 H 0.03 0.72 8.08 -51.93 -0.42 0.30 16 49 H 0.03 0.75 8.08 -51.93 -0.42 0.33 16 50 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 51 H 0.12 2.22 8.06 -52.49 -0.42 1.80 16 52 H 0.11 1.72 8.06 -52.49 -0.42 1.30 16 LS Contribution 377.83 15.07 5.69 5.69 Total: -1.00 -28.79 377.83 -10.02 -38.80 By element: Atomic # 1 Polarization: 14.70 SS G_CDS: -8.82 Total: 5.87 kcal Atomic # 6 Polarization: -25.34 SS G_CDS: -2.07 Total: -27.41 kcal Atomic # 7 Polarization: -39.71 SS G_CDS: 0.20 Total: -39.51 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -28.79 -10.02 -38.80 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167624946.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.862 kcal (2) G-P(sol) polarization free energy of solvation -28.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.803 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds