Wall clock time and date at job start Tue Mar 31 2020 10:54:13
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.54575 * 1
3 3 C 1.53135 * 107.17255 * 2 1
4 4 C 1.52673 * 107.41648 * 242.08070 * 2 1 3
5 5 C 1.52791 * 110.64866 * 191.71910 * 4 2 1
6 6 N 1.47262 * 109.21504 * 178.05977 * 5 4 2
7 7 C 1.52880 * 108.73736 * 59.01794 * 5 4 2
8 8 C 1.52887 * 110.05219 * 299.73645 * 7 5 4
9 9 C 1.52985 * 109.95761 * 286.96462 * 8 7 5
10 10 C 1.54514 * 107.40002 * 170.46777 * 8 7 5
11 11 N 1.45106 * 107.91589 * 120.35793 * 2 1 3
12 12 C 1.39673 * 112.04018 * 295.72538 * 11 2 1
13 13 C 1.38914 * 120.07123 * 294.15808 * 12 11 2
14 14 C 1.38108 * 119.92137 * 179.76540 * 13 12 11
15 15 C 1.38290 * 120.07161 * 0.50327 * 14 13 12
16 16 C 1.50703 * 119.91939 * 179.76466 * 15 14 13
17 17 C 1.50697 * 109.47202 * 269.97890 * 16 15 14
18 18 H 1.07997 * 120.00176 * 0.02562 * 17 16 15
19 19 C 1.37882 * 119.99795 * 180.02562 * 17 16 15
20 20 N 1.31515 * 119.99773 * 0.02562 * 19 17 16
21 21 Si 1.86797 * 119.99986 * 179.97438 * 19 17 16
22 22 H 1.48500 * 109.46910 * 60.00173 * 21 19 17
23 23 H 1.48500 * 109.47347 * 180.02562 * 21 19 17
24 24 H 1.48501 * 109.47096 * 300.00421 * 21 19 17
25 25 C 1.38281 * 120.15115 * 359.74870 * 15 14 13
26 26 C 1.38105 * 120.07821 * 359.97438 * 25 15 14
27 27 H 1.08999 * 109.47505 * 296.61145 * 1 2 3
28 28 H 1.09001 * 109.47227 * 176.60838 * 1 2 3
29 29 H 1.09000 * 109.47291 * 56.61514 * 1 2 3
30 30 H 1.09004 * 109.47320 * 54.98103 * 3 2 1
31 31 H 1.09000 * 109.47275 * 174.97754 * 3 2 1
32 32 H 1.09007 * 109.47563 * 294.98283 * 3 2 1
33 33 H 1.09292 * 109.36320 * 312.22591 * 4 2 1
34 34 H 1.09266 * 109.39760 * 71.15434 * 4 2 1
35 35 H 1.08717 * 110.38613 * 297.70711 * 5 4 2
36 36 H 1.00900 * 110.99860 * 61.22597 * 6 5 4
37 37 H 1.00899 * 110.99991 * 185.18759 * 6 5 4
38 38 H 1.09166 * 109.44223 * 179.50695 * 7 5 4
39 39 H 1.09143 * 109.47847 * 60.03839 * 7 5 4
40 40 H 1.08998 * 109.46884 * 189.47960 * 9 8 7
41 41 H 1.08994 * 109.46859 * 309.48803 * 9 8 7
42 42 H 1.09002 * 109.47170 * 69.48425 * 9 8 7
43 43 H 1.09006 * 109.47040 * 301.49098 * 10 8 7
44 44 H 1.08999 * 109.46973 * 61.48698 * 10 8 7
45 45 H 1.09000 * 109.47173 * 181.48926 * 10 8 7
46 46 H 1.07997 * 120.03611 * 359.97438 * 13 12 11
47 47 H 1.07994 * 119.96099 * 180.24748 * 14 13 12
48 48 H 1.08997 * 109.47394 * 29.98438 * 16 15 14
49 49 H 1.08997 * 109.46468 * 149.97987 * 16 15 14
50 50 H 0.96999 * 119.99443 * 179.97438 * 20 19 17
51 51 H 1.08002 * 119.96031 * 179.97438 * 25 15 14
52 52 H 1.07994 * 120.03847 * 180.02562 * 26 25 15
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5458 0.0000 0.0000
3 6 1.9979 1.4631 0.0000
4 6 2.0027 -0.6821 -1.2872
5 6 3.4998 -0.9832 -1.2352
6 7 3.8969 -1.6811 -2.4697
7 6 3.7772 -1.8887 -0.0351
8 6 3.3563 -1.1894 1.2577
9 6 4.3484 -0.0749 1.5953
10 6 3.4326 -2.2337 2.3939
11 7 1.9921 -0.6978 1.1914
12 6 1.6187 -0.0308 2.3604
13 6 2.1562 1.2164 2.6521
14 6 1.7811 1.8753 3.8065
15 6 0.8793 1.2902 4.6765
16 6 0.4764 2.0100 5.9377
17 6 1.4148 1.6306 7.0542
18 1 2.2224 0.9380 6.8690
19 6 1.2422 2.1679 8.3123
20 7 0.2584 3.0109 8.5379
21 14 2.4049 1.6971 9.6964
22 1 3.7918 2.0806 9.3297
23 1 2.0072 2.4055 10.9395
24 1 2.3396 0.2305 9.9205
25 6 0.3463 0.0465 4.3916
26 6 0.7127 -0.6154 3.2362
27 1 -0.3634 0.4603 0.9188
28 1 -0.3634 -1.0259 -0.0608
29 1 -0.3634 0.5655 -0.8581
30 1 1.5417 1.9844 0.8416
31 1 3.0832 1.5080 0.0900
32 1 1.6905 1.9385 -0.9315
33 1 1.4500 -1.6158 -1.4185
34 1 1.7937 -0.0290 -2.1379
35 1 4.0691 -0.0605 -1.1545
36 1 3.7251 -1.1065 -3.2811
37 1 4.8633 -1.9682 -2.4278
38 1 4.8435 -2.1185 0.0079
39 1 3.2165 -2.8188 -0.1437
40 1 4.1412 0.3052 2.5956
41 1 5.3639 -0.4693 1.5594
42 1 4.2469 0.7336 0.8712
43 1 2.7799 -3.0746 2.1589
44 1 4.4588 -2.5873 2.4941
45 1 3.1129 -1.7761 3.3301
46 1 2.8641 1.6717 1.9754
47 1 2.1956 2.8468 4.0319
48 1 0.5241 3.0864 5.7729
49 1 -0.5415 1.7285 6.2072
50 1 0.1368 3.3886 9.4231
51 1 -0.3574 -0.4078 5.0734
52 1 0.2957 -1.5865 3.0141
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001167624946.mol2 52
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 10:54:13
Heat of formation + Delta-G solvation = 31.059077 kcal
Electronic energy + Delta-G solvation = -28436.037974 eV
Core-core repulsion = 25014.016833 eV
Total energy + Delta-G solvation = -3422.021141 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 316.221 amu
Computer time = 0.62 seconds
Orbital eigenvalues (eV)
-41.17341 -38.09763 -35.48016 -35.13309 -33.21060 -31.51865 -30.69278 -29.44340
-28.50172 -27.66594 -26.57116 -26.40138 -26.16045 -23.11269 -21.77293 -21.28421
-20.67166 -20.10460 -18.25386 -16.39591 -16.35246 -16.28093 -15.55670 -15.15637
-15.06346 -14.80870 -14.27745 -14.11814 -13.72197 -13.52283 -13.45950 -13.23017
-13.09440 -12.61752 -12.57200 -12.44622 -12.16405 -11.84773 -11.72496 -11.60955
-11.58800 -11.48046 -11.31101 -11.25208 -11.15580 -11.06488 -10.67215 -10.65343
-10.61204 -10.32437 -10.19885 -10.05041 -9.47857 -9.40760 -8.95327 -8.41965
-8.16244 -8.03195 -7.57752 -6.03917 -4.07720 2.04735 2.11920 3.31597
3.35736 3.38931 3.74217 4.12136 4.35899 4.51702 4.61778 4.62691
4.92747 4.96537 4.99184 5.14622 5.26126 5.30368 5.33728 5.38202
5.49792 5.55470 5.57404 5.64684 5.69663 5.77180 5.78852 5.81371
5.92304 5.93094 5.96772 5.99989 6.03265 6.06473 6.07375 6.17575
6.26292 6.34168 6.38446 6.40204 6.45279 6.51589 6.69901 6.86457
7.13903 7.14496 7.20884 7.22927 7.46052 7.57413 7.59065 7.88508
7.91932 7.99652 8.32962 8.97422 9.55938 11.05827
Molecular weight = 316.22amu
Principal moments of inertia in cm(-1)
A = 0.022923 B = 0.003404 C = 0.003204
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1221.175027 B = 8223.886181 C = 8735.687778
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.141 4.141
2 C 0.147 3.853
3 C -0.194 4.194
4 C -0.098 4.098
5 C 0.090 3.910
6 N -0.849 5.849
7 C -0.099 4.099
8 C 0.146 3.854
9 C -0.189 4.189
10 C -0.143 4.143
11 N -0.520 5.520
12 C 0.079 3.921
13 C -0.150 4.150
14 C -0.126 4.126
15 C -0.032 4.032
16 C 0.048 3.952
17 C -0.510 4.510
18 H 0.056 0.944
19 C 0.058 3.942
20 N -0.895 5.895
21 Si 0.895 3.105
22 H -0.277 1.277
23 H -0.287 1.287
24 H -0.276 1.276
25 C -0.125 4.125
26 C -0.097 4.097
27 H 0.062 0.938
28 H 0.059 0.941
29 H 0.052 0.948
30 H 0.077 0.923
31 H 0.057 0.943
32 H 0.053 0.947
33 H 0.076 0.924
34 H 0.062 0.938
35 H 0.035 0.965
36 H 0.338 0.662
37 H 0.339 0.661
38 H 0.063 0.937
39 H 0.077 0.923
40 H 0.074 0.926
41 H 0.054 0.946
42 H 0.056 0.944
43 H 0.058 0.942
44 H 0.053 0.947
45 H 0.064 0.936
46 H 0.120 0.880
47 H 0.113 0.887
48 H 0.026 0.974
49 H 0.028 0.972
50 H 0.262 0.738
51 H 0.117 0.883
52 H 0.114 0.886
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 5.824 -7.463 -21.052 23.083
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.199 4.199
2 C 0.058 3.942
3 C -0.253 4.253
4 C -0.136 4.136
5 C -0.021 4.021
6 N -0.378 5.378
7 C -0.137 4.137
8 C 0.058 3.942
9 C -0.248 4.248
10 C -0.200 4.200
11 N -0.241 5.241
12 C -0.013 4.013
13 C -0.170 4.170
14 C -0.145 4.145
15 C -0.032 4.032
16 C 0.011 3.989
17 C -0.549 4.549
18 H 0.074 0.926
19 C -0.143 4.143
20 N -0.534 5.534
21 Si 0.722 3.278
22 H -0.202 1.202
23 H -0.212 1.212
24 H -0.201 1.201
25 C -0.144 4.144
26 C -0.116 4.116
27 H 0.081 0.919
28 H 0.078 0.922
29 H 0.071 0.929
30 H 0.096 0.904
31 H 0.075 0.925
32 H 0.072 0.928
33 H 0.095 0.905
34 H 0.081 0.919
35 H 0.053 0.947
36 H 0.151 0.849
37 H 0.151 0.849
38 H 0.081 0.919
39 H 0.096 0.904
40 H 0.092 0.908
41 H 0.073 0.927
42 H 0.075 0.925
43 H 0.078 0.922
44 H 0.072 0.928
45 H 0.083 0.917
46 H 0.137 0.863
47 H 0.131 0.869
48 H 0.045 0.955
49 H 0.046 0.954
50 H 0.072 0.928
51 H 0.135 0.865
52 H 0.132 0.868
Dipole moment (debyes) X Y Z Total
from point charges 4.975 -8.272 -20.769 22.902
hybrid contribution 1.816 1.329 0.754 2.373
sum 6.790 -6.943 -20.015 22.247
Atomic orbital electron populations
1.22276 0.93857 1.01986 1.01762 1.20411 0.95220 0.90664 0.87936
1.23156 1.01407 0.98009 1.02686 1.21597 0.94867 1.01247 0.95887
1.21276 0.96019 0.94816 0.89959 1.58840 1.27279 1.47462 1.04240
1.21653 1.00880 0.99035 0.92135 1.20441 0.85034 0.93829 0.94945
1.22942 0.99293 0.99536 1.03019 1.22283 1.00861 0.98449 0.98443
1.54789 1.21300 1.47556 1.00464 1.17952 0.99306 0.92511 0.91546
1.22013 1.00925 0.96113 0.97933 1.20962 0.98960 1.00342 0.94199
1.20675 0.92775 0.93953 0.95757 1.18345 0.97128 0.95178 0.88274
1.21015 1.13425 1.26743 0.93681 0.92578 1.25009 0.95562 0.95059
0.98694 1.69948 1.30569 1.30444 1.22405 0.86611 0.81200 0.78719
0.81243 1.20215 1.21246 1.20143 1.21009 1.01369 0.95381 0.96602
1.20950 0.97386 0.99360 0.93930 0.91937 0.92238 0.92862 0.90404
0.92478 0.92795 0.90499 0.91918 0.94695 0.84945 0.84874 0.91875
0.90416 0.90758 0.92707 0.92546 0.92244 0.92836 0.91736 0.86276
0.86865 0.95526 0.95414 0.92810 0.86468 0.86786
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -1.65 8.19 37.99 0.31 -1.34 16
2 C 0.15 1.67 0.65 -131.84 -0.09 1.59 16
3 C -0.19 -2.22 6.47 37.23 0.24 -1.98 16
4 C -0.10 -0.97 4.24 -27.01 -0.11 -1.09 16
5 C 0.09 0.84 3.08 -67.68 -0.21 0.63 16
6 N -0.85 -6.62 9.24 -4.69 -0.04 -6.67 16
7 C -0.10 -1.00 4.21 -26.85 -0.11 -1.11 16
8 C 0.15 1.72 0.63 -131.81 -0.08 1.64 16
9 C -0.19 -2.27 6.54 37.15 0.24 -2.03 16
10 C -0.14 -1.77 8.11 37.95 0.31 -1.46 16
11 N -0.52 -6.65 3.43 -142.57 -0.49 -7.13 16
12 C 0.08 1.21 1.96 -83.79 -0.16 1.04 16
13 C -0.15 -2.42 4.81 -39.38 -0.19 -2.61 16
14 C -0.13 -2.41 9.69 -39.61 -0.38 -2.80 16
15 C -0.03 -0.67 5.07 -104.59 -0.53 -1.20 16
16 C 0.05 1.22 5.10 -29.04 -0.15 1.07 16
17 C -0.51 -14.26 9.09 -34.44 -0.31 -14.57 16
18 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16
19 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16
20 N -0.89 -26.44 13.29 55.43 0.74 -25.71 16
21 Si 0.89 21.57 29.54 -169.99 -5.02 16.55 16
22 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16
23 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16
24 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16
25 C -0.12 -2.40 9.69 -39.61 -0.38 -2.78 16
26 C -0.10 -1.60 9.08 -39.38 -0.36 -1.96 16
27 H 0.06 0.85 6.99 -51.93 -0.36 0.49 16
28 H 0.06 0.69 8.09 -51.93 -0.42 0.27 16
29 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16
30 H 0.08 1.03 5.39 -51.93 -0.28 0.75 16
31 H 0.06 0.64 4.21 -51.93 -0.22 0.43 16
32 H 0.05 0.54 8.00 -51.93 -0.42 0.13 16
33 H 0.08 0.84 8.02 -51.76 -0.42 0.42 16
34 H 0.06 0.56 7.98 -51.78 -0.41 0.15 16
35 H 0.04 0.34 6.66 -52.09 -0.35 -0.01 16
36 H 0.34 2.20 9.05 -39.29 -0.36 1.84 16
37 H 0.34 2.23 8.99 -39.29 -0.35 1.88 16
38 H 0.06 0.58 8.01 -51.84 -0.42 0.16 16
39 H 0.08 0.86 8.06 -51.85 -0.42 0.44 16
40 H 0.07 1.06 5.83 -51.93 -0.30 0.75 16
41 H 0.05 0.59 8.02 -51.93 -0.42 0.17 16
42 H 0.06 0.65 4.15 -51.93 -0.22 0.44 16
43 H 0.06 0.72 8.11 -51.93 -0.42 0.30 16
44 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16
45 H 0.06 0.95 6.74 -51.93 -0.35 0.60 16
46 H 0.12 1.73 3.99 -52.49 -0.21 1.52 16
47 H 0.11 2.16 8.06 -52.49 -0.42 1.74 16
48 H 0.03 0.72 8.08 -51.93 -0.42 0.30 16
49 H 0.03 0.75 8.08 -51.93 -0.42 0.33 16
50 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16
51 H 0.12 2.22 8.06 -52.49 -0.42 1.80 16
52 H 0.11 1.72 8.06 -52.49 -0.42 1.30 16
LS Contribution 377.83 15.07 5.69 5.69
Total: -1.00 -28.79 377.83 -10.02 -38.80
By element:
Atomic # 1 Polarization: 14.70 SS G_CDS: -8.82 Total: 5.87 kcal
Atomic # 6 Polarization: -25.34 SS G_CDS: -2.07 Total: -27.41 kcal
Atomic # 7 Polarization: -39.71 SS G_CDS: 0.20 Total: -39.51 kcal
Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal
Total LS contribution 5.69 Total: 5.69 kcal
Total: -28.79 -10.02 -38.80 kcal
The number of atoms in the molecule is 52
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001167624946.mol2 52
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 69.862 kcal
(2) G-P(sol) polarization free energy of solvation -28.786 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.076 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.017 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.803 kcal
(6) G-S(sol) free energy of system = (1) + (5) 31.059 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.62 seconds