Wall clock time and date at job start Tue Mar 31 2020 11:25:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09009 * 109.45478 * 2 1 4 4 C 1.53039 * 109.46260 * 119.96480 * 2 1 3 5 5 C 1.53123 * 109.31189 * 179.17811 * 4 2 1 6 6 C 1.53129 * 109.15931 * 302.40768 * 5 4 2 7 7 C 1.53036 * 109.30712 * 57.59477 * 6 5 4 8 8 N 1.46842 * 109.46826 * 240.02071 * 2 1 3 9 9 C 1.46910 * 110.99703 * 54.14488 * 8 2 1 10 10 C 1.52993 * 109.47125 * 170.00310 * 9 8 2 11 11 C 1.52994 * 109.47402 * 179.97438 * 10 9 8 12 12 N 1.46501 * 109.47568 * 179.97438 * 11 10 9 13 13 C 1.39672 * 120.00089 * 180.02562 * 12 11 10 14 14 C 1.38911 * 120.07419 * 359.72128 * 13 12 11 15 15 C 1.38113 * 119.92228 * 179.77030 * 14 13 12 16 16 C 1.38282 * 120.07564 * 0.50926 * 15 14 13 17 17 C 1.50695 * 119.92576 * 179.72211 * 16 15 14 18 18 C 1.50701 * 109.47548 * 270.02301 * 17 16 15 19 19 H 1.08005 * 119.99680 * 359.97438 * 18 17 16 20 20 C 1.37869 * 120.00389 * 180.02562 * 18 17 16 21 21 N 1.31512 * 119.99839 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 120.00031 * 179.97438 * 20 18 17 23 23 H 1.48491 * 109.47104 * 0.02562 * 22 20 18 24 24 H 1.48502 * 109.46959 * 120.00047 * 22 20 18 25 25 H 1.48497 * 109.47269 * 239.99789 * 22 20 18 26 26 C 1.38285 * 120.15101 * 359.74561 * 16 15 14 27 27 C 1.38109 * 120.07168 * 0.02562 * 26 16 15 28 28 H 1.08995 * 109.47400 * 300.03261 * 1 2 3 29 29 H 1.08997 * 109.46740 * 60.03381 * 1 2 3 30 30 H 1.08997 * 109.47006 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.50563 * 299.14144 * 4 2 1 32 32 H 1.09003 * 109.50107 * 59.22125 * 4 2 1 33 33 H 1.09000 * 109.52057 * 62.27355 * 5 4 2 34 34 H 1.08995 * 109.52240 * 182.46183 * 5 4 2 35 35 H 1.09000 * 109.46579 * 297.65836 * 6 5 4 36 36 H 1.08997 * 109.53656 * 177.57437 * 6 5 4 37 37 H 1.09001 * 109.45883 * 180.82826 * 7 6 5 38 38 H 1.09002 * 109.45657 * 60.85248 * 7 6 5 39 39 H 1.08999 * 109.46693 * 290.00367 * 9 8 2 40 40 H 1.09002 * 109.47019 * 49.99864 * 9 8 2 41 41 H 1.09007 * 109.47296 * 299.99988 * 10 9 8 42 42 H 1.09002 * 109.47536 * 59.99871 * 10 9 8 43 43 H 1.09007 * 109.46972 * 300.00293 * 11 10 9 44 44 H 1.08997 * 109.47080 * 59.99910 * 11 10 9 45 45 H 0.96998 * 120.00013 * 0.02562 * 12 11 10 46 46 H 1.07996 * 120.04334 * 0.02562 * 14 13 12 47 47 H 1.08003 * 119.95888 * 180.25577 * 15 14 13 48 48 H 1.09000 * 109.47108 * 30.02738 * 17 16 15 49 49 H 1.09002 * 109.46976 * 150.02264 * 17 16 15 50 50 H 0.97011 * 119.99939 * 179.97438 * 21 20 18 51 51 H 1.07993 * 119.96708 * 180.02562 * 26 16 15 52 52 H 1.07997 * 120.03734 * 180.02562 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0279 0.0000 4 6 2.0399 -0.7207 1.2501 5 6 3.5710 -0.7367 1.2363 6 6 4.0549 -1.4187 -0.0465 7 6 3.4866 -0.6776 -1.2589 8 7 2.0194 -0.6918 -1.1992 9 6 1.4374 -0.1107 -2.4165 10 6 2.1498 -0.6806 -3.6447 11 6 1.5433 -0.0759 -4.9125 12 7 2.2259 -0.6212 -6.0885 13 6 1.8438 -0.2145 -7.3689 14 6 0.8128 0.7026 -7.5292 15 6 0.4407 1.1063 -8.7965 16 6 1.0860 0.5906 -9.9055 17 6 0.6730 1.0286 -11.2869 18 6 -0.4077 0.1133 -11.8022 19 1 -0.7599 -0.7041 -11.1905 20 6 -0.9460 0.3189 -13.0547 21 7 -0.5160 1.3134 -13.8000 22 14 -2.2851 -0.8162 -13.6935 23 1 -2.5885 -1.8486 -12.6703 24 1 -3.5100 -0.0260 -13.9771 25 1 -1.8217 -1.4757 -14.9407 26 6 2.1092 -0.3265 -9.7497 27 6 2.4895 -0.7309 -8.4851 28 1 -0.3634 0.5143 0.8896 29 1 -0.3633 0.5133 -0.8903 30 1 -0.3633 -1.0276 0.0005 31 1 1.6894 -0.1979 2.1400 32 1 1.6654 -1.7443 1.2582 33 1 3.9462 0.2862 1.2682 34 1 3.9373 -1.2872 2.1027 35 1 3.7126 -2.4534 -0.0591 36 1 5.1440 -1.3951 -0.0833 37 1 3.8176 -1.1699 -2.1733 38 1 3.8404 0.3533 -1.2529 39 1 0.3766 -0.3565 -2.4651 40 1 1.5588 0.9724 -2.3960 41 1 3.2107 -0.4348 -3.5960 42 1 2.0284 -1.7637 -3.6652 43 1 0.4825 -0.3221 -4.9609 44 1 1.6644 1.0071 -4.8923 45 1 2.9432 -1.2647 -5.9780 46 1 0.3056 1.1027 -6.6638 47 1 -0.3580 1.8224 -8.9217 48 1 0.2951 2.0502 -11.2464 49 1 1.5339 0.9859 -11.9542 50 1 -0.8945 1.4578 -14.6815 51 1 2.6114 -0.7270 -10.6178 52 1 3.2889 -1.4469 -8.3640 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001167751676.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:25:31 Heat of formation + Delta-G solvation = 4.663036 kcal Electronic energy + Delta-G solvation = -25360.127423 eV Core-core repulsion = 21936.961664 eV Total energy + Delta-G solvation = -3423.165759 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -39.89550 -38.85076 -36.34622 -34.51816 -33.23265 -32.86037 -31.33695 -30.15640 -29.50678 -27.53781 -26.48529 -25.29659 -23.98453 -22.74214 -22.08013 -21.62381 -20.82628 -20.05104 -19.90520 -16.81396 -16.55547 -16.20762 -15.94413 -15.63855 -15.33642 -14.80547 -14.74646 -14.55172 -14.24765 -14.10244 -13.69337 -13.38211 -13.16788 -13.04338 -12.67488 -12.62193 -12.41267 -12.37475 -12.26871 -12.00652 -11.81064 -11.59333 -11.38420 -11.30454 -11.17667 -11.13973 -11.02807 -10.64699 -10.58800 -10.57394 -10.47649 -10.06140 -9.71669 -9.38291 -8.96754 -8.65674 -8.35391 -8.19051 -6.72626 -5.95071 -3.99420 2.16744 2.41283 3.33527 3.34763 3.40953 3.46681 3.73859 4.33271 4.38047 4.45139 4.46773 4.65310 4.68573 4.73712 4.81795 4.85264 4.96808 4.98107 5.10316 5.19219 5.20765 5.32028 5.37509 5.40211 5.42053 5.47120 5.50172 5.52323 5.56444 5.59818 5.63154 5.72201 5.75577 5.82142 5.87451 5.88894 6.00001 6.09673 6.18355 6.37015 6.49099 6.72596 6.75514 6.76658 6.90354 7.34508 7.34717 7.47904 7.65148 7.89293 8.00529 8.01759 8.09955 8.44221 9.06790 9.64002 11.13222 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.029001 B = 0.001797 C = 0.001747 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 965.249692 B =15577.334978 C =16027.541771 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.081 3.919 3 H 0.039 0.961 4 C -0.111 4.111 5 C -0.123 4.123 6 C -0.118 4.118 7 C 0.048 3.952 8 N -0.532 5.532 9 C 0.058 3.942 10 C -0.133 4.133 11 C 0.133 3.867 12 N -0.758 5.758 13 C 0.181 3.819 14 C -0.194 4.194 15 C -0.081 4.081 16 C -0.085 4.085 17 C 0.052 3.948 18 C -0.507 4.507 19 H 0.057 0.943 20 C 0.056 3.944 21 N -0.896 5.896 22 Si 0.893 3.107 23 H -0.272 1.272 24 H -0.284 1.284 25 H -0.284 1.284 26 C -0.080 4.080 27 C -0.193 4.193 28 H 0.059 0.941 29 H 0.058 0.942 30 H 0.064 0.936 31 H 0.065 0.935 32 H 0.071 0.929 33 H 0.057 0.943 34 H 0.063 0.937 35 H 0.071 0.929 36 H 0.065 0.935 37 H 0.083 0.917 38 H 0.031 0.969 39 H 0.082 0.918 40 H 0.035 0.965 41 H 0.069 0.931 42 H 0.077 0.923 43 H 0.055 0.945 44 H 0.052 0.948 45 H 0.392 0.608 46 H 0.108 0.892 47 H 0.115 0.885 48 H 0.025 0.975 49 H 0.025 0.975 50 H 0.260 0.740 51 H 0.116 0.884 52 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.950 -3.324 31.037 32.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.027 4.027 3 H 0.057 0.943 4 C -0.149 4.149 5 C -0.160 4.160 6 C -0.155 4.155 7 C -0.080 4.080 8 N -0.258 5.258 9 C -0.070 4.070 10 C -0.171 4.171 11 C 0.007 3.993 12 N -0.391 5.391 13 C 0.081 3.919 14 C -0.217 4.217 15 C -0.100 4.100 16 C -0.086 4.086 17 C 0.016 3.984 18 C -0.545 4.545 19 H 0.075 0.925 20 C -0.145 4.145 21 N -0.536 5.536 22 Si 0.720 3.280 23 H -0.197 1.197 24 H -0.210 1.210 25 H -0.210 1.210 26 C -0.099 4.099 27 C -0.216 4.216 28 H 0.078 0.922 29 H 0.077 0.923 30 H 0.083 0.917 31 H 0.083 0.917 32 H 0.090 0.910 33 H 0.076 0.924 34 H 0.082 0.918 35 H 0.089 0.911 36 H 0.084 0.916 37 H 0.101 0.899 38 H 0.049 0.951 39 H 0.100 0.900 40 H 0.054 0.946 41 H 0.088 0.912 42 H 0.095 0.905 43 H 0.074 0.926 44 H 0.070 0.930 45 H 0.226 0.774 46 H 0.126 0.874 47 H 0.133 0.867 48 H 0.043 0.957 49 H 0.043 0.957 50 H 0.070 0.930 51 H 0.134 0.866 52 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 7.640 -3.618 31.031 32.161 hybrid contribution -0.252 0.030 -0.455 0.521 sum 7.387 -3.589 30.575 31.659 Atomic orbital electron populations 1.21914 0.94205 1.02727 1.01872 1.21632 0.95466 0.95260 0.90323 0.94340 1.21633 0.95429 1.01487 0.96378 1.21593 0.95881 1.00621 0.97931 1.21595 0.99676 1.00311 0.93957 1.22225 0.87529 0.98932 0.99302 1.62017 1.07030 1.55032 1.01698 1.22052 0.99806 0.96636 0.88491 1.21908 1.00244 1.01799 0.93158 1.21088 0.96472 0.97497 0.84196 1.44354 1.41751 1.50807 1.02221 1.17600 0.94815 0.95142 0.84299 1.20507 1.00750 1.02980 0.97442 1.20848 0.98597 0.99170 0.91359 1.20458 0.94536 0.96117 0.97536 1.18253 0.96547 0.96707 0.86941 1.21181 1.19520 1.13286 1.00525 0.92497 1.25022 0.97071 0.95526 0.96890 1.69976 1.42922 1.30025 1.10642 0.86519 0.81770 0.80868 0.78795 1.19702 1.21038 1.21028 1.20828 0.96853 0.96540 0.95659 1.20462 1.03834 1.05368 0.91913 0.92228 0.92316 0.91651 0.91656 0.91013 0.92407 0.91813 0.91075 0.91632 0.89912 0.95076 0.89985 0.94642 0.91197 0.90470 0.92648 0.92969 0.77400 0.87421 0.86666 0.95692 0.95683 0.93048 0.86599 0.87458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.95 8.78 37.16 0.33 -0.63 16 2 C 0.08 0.57 2.40 -67.72 -0.16 0.41 16 3 H 0.04 0.29 8.14 -51.92 -0.42 -0.13 16 4 C -0.11 -0.68 5.37 -26.65 -0.14 -0.82 16 5 C -0.12 -0.71 6.01 -26.60 -0.16 -0.87 16 6 C -0.12 -0.73 6.09 -26.65 -0.16 -0.89 16 7 C 0.05 0.34 4.85 -3.83 -0.02 0.32 16 8 N -0.53 -4.10 4.64 -226.68 -1.05 -5.15 16 9 C 0.06 0.45 4.36 -3.82 -0.02 0.43 16 10 C -0.13 -1.07 4.58 -26.74 -0.12 -1.19 16 11 C 0.13 1.38 4.91 -4.04 -0.02 1.36 16 12 N -0.76 -9.55 5.73 -58.63 -0.34 -9.88 16 13 C 0.18 2.98 6.65 -83.79 -0.56 2.42 16 14 C -0.19 -3.42 9.31 -39.38 -0.37 -3.78 16 15 C -0.08 -1.65 9.69 -39.61 -0.38 -2.04 16 16 C -0.08 -1.92 5.07 -104.59 -0.53 -2.45 16 17 C 0.05 1.39 5.10 -29.04 -0.15 1.24 16 18 C -0.51 -14.57 9.09 -34.44 -0.31 -14.89 16 19 H 0.06 1.64 7.74 -52.48 -0.41 1.23 16 20 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 21 N -0.90 -26.99 13.29 55.43 0.74 -26.25 16 22 Si 0.89 21.97 29.54 -169.99 -5.02 16.95 16 23 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 24 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 25 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 26 C -0.08 -1.63 9.69 -39.61 -0.38 -2.01 16 27 C -0.19 -3.36 9.90 -39.38 -0.39 -3.75 16 28 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 29 H 0.06 0.38 6.55 -51.93 -0.34 0.04 16 30 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 34 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 35 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 37 H 0.08 0.58 5.81 -51.93 -0.30 0.28 16 38 H 0.03 0.23 8.14 -51.93 -0.42 -0.19 16 39 H 0.08 0.64 6.84 -51.93 -0.36 0.28 16 40 H 0.04 0.28 8.08 -51.93 -0.42 -0.14 16 41 H 0.07 0.54 6.21 -51.93 -0.32 0.22 16 42 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 43 H 0.06 0.61 7.94 -51.93 -0.41 0.20 16 44 H 0.05 0.56 7.96 -51.93 -0.41 0.15 16 45 H 0.39 4.25 8.49 -40.82 -0.35 3.91 16 46 H 0.11 1.64 6.73 -52.49 -0.35 1.29 16 47 H 0.12 2.28 8.06 -52.48 -0.42 1.86 16 48 H 0.02 0.69 8.08 -51.93 -0.42 0.27 16 49 H 0.02 0.69 8.08 -51.93 -0.42 0.27 16 50 H 0.26 7.36 8.31 -40.81 -0.34 7.02 16 51 H 0.12 2.28 8.06 -52.49 -0.42 1.86 16 52 H 0.11 1.58 8.06 -52.49 -0.42 1.16 16 LS Contribution 402.40 15.07 6.06 6.06 Total: -1.00 -30.78 402.40 -12.82 -43.61 By element: Atomic # 1 Polarization: 9.86 SS G_CDS: -9.56 Total: 0.30 kcal Atomic # 6 Polarization: -21.98 SS G_CDS: -3.65 Total: -25.63 kcal Atomic # 7 Polarization: -40.64 SS G_CDS: -0.65 Total: -41.29 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -30.78 -12.82 -43.61 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167751676.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.270 kcal (2) G-P(sol) polarization free energy of solvation -30.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.823 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.607 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.663 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds