Wall clock time and date at job start Tue Mar 31 2020 11:25:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09009 * 109.45478 * 2 1 4 4 C 1.53039 * 109.46260 * 119.96480 * 2 1 3 5 5 C 1.53123 * 109.31189 * 179.17811 * 4 2 1 6 6 C 1.53129 * 109.15931 * 302.40768 * 5 4 2 7 7 C 1.53036 * 109.30712 * 57.59477 * 6 5 4 8 8 N 1.46842 * 109.46826 * 240.02071 * 2 1 3 9 9 C 1.46910 * 110.99703 * 54.14488 * 8 2 1 10 10 C 1.52993 * 109.47125 * 170.00310 * 9 8 2 11 11 C 1.52994 * 109.47402 * 179.97438 * 10 9 8 12 12 N 1.46501 * 109.47568 * 179.97438 * 11 10 9 13 13 C 1.39672 * 120.00089 * 180.02562 * 12 11 10 14 14 C 1.38911 * 120.07419 * 359.72128 * 13 12 11 15 15 C 1.38113 * 119.92228 * 179.77030 * 14 13 12 16 16 C 1.38282 * 120.07564 * 0.50926 * 15 14 13 17 17 C 1.50695 * 119.92576 * 179.72211 * 16 15 14 18 18 C 1.50701 * 109.47548 * 270.02301 * 17 16 15 19 19 H 1.08005 * 119.99680 * 359.97438 * 18 17 16 20 20 C 1.37869 * 120.00389 * 180.02562 * 18 17 16 21 21 N 1.31512 * 119.99839 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 120.00031 * 179.97438 * 20 18 17 23 23 H 1.48491 * 109.47104 * 0.02562 * 22 20 18 24 24 H 1.48502 * 109.46959 * 120.00047 * 22 20 18 25 25 H 1.48497 * 109.47269 * 239.99789 * 22 20 18 26 26 C 1.38285 * 120.15101 * 359.74561 * 16 15 14 27 27 C 1.38109 * 120.07168 * 0.02562 * 26 16 15 28 28 H 1.08995 * 109.47400 * 300.03261 * 1 2 3 29 29 H 1.08997 * 109.46740 * 60.03381 * 1 2 3 30 30 H 1.08997 * 109.47006 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.50563 * 299.14144 * 4 2 1 32 32 H 1.09003 * 109.50107 * 59.22125 * 4 2 1 33 33 H 1.09000 * 109.52057 * 62.27355 * 5 4 2 34 34 H 1.08995 * 109.52240 * 182.46183 * 5 4 2 35 35 H 1.09000 * 109.46579 * 297.65836 * 6 5 4 36 36 H 1.08997 * 109.53656 * 177.57437 * 6 5 4 37 37 H 1.09001 * 109.45883 * 180.82826 * 7 6 5 38 38 H 1.09002 * 109.45657 * 60.85248 * 7 6 5 39 39 H 1.08999 * 109.46693 * 290.00367 * 9 8 2 40 40 H 1.09002 * 109.47019 * 49.99864 * 9 8 2 41 41 H 1.09007 * 109.47296 * 299.99988 * 10 9 8 42 42 H 1.09002 * 109.47536 * 59.99871 * 10 9 8 43 43 H 1.09007 * 109.46972 * 300.00293 * 11 10 9 44 44 H 1.08997 * 109.47080 * 59.99910 * 11 10 9 45 45 H 0.96998 * 120.00013 * 0.02562 * 12 11 10 46 46 H 1.07996 * 120.04334 * 0.02562 * 14 13 12 47 47 H 1.08003 * 119.95888 * 180.25577 * 15 14 13 48 48 H 1.09000 * 109.47108 * 30.02738 * 17 16 15 49 49 H 1.09002 * 109.46976 * 150.02264 * 17 16 15 50 50 H 0.97011 * 119.99939 * 179.97438 * 21 20 18 51 51 H 1.07993 * 119.96708 * 180.02562 * 26 16 15 52 52 H 1.07997 * 120.03734 * 180.02562 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0279 0.0000 4 6 2.0399 -0.7207 1.2501 5 6 3.5710 -0.7367 1.2363 6 6 4.0549 -1.4187 -0.0465 7 6 3.4866 -0.6776 -1.2589 8 7 2.0194 -0.6918 -1.1992 9 6 1.4374 -0.1107 -2.4165 10 6 2.1498 -0.6806 -3.6447 11 6 1.5433 -0.0759 -4.9125 12 7 2.2259 -0.6212 -6.0885 13 6 1.8438 -0.2145 -7.3689 14 6 0.8128 0.7026 -7.5292 15 6 0.4407 1.1063 -8.7965 16 6 1.0860 0.5906 -9.9055 17 6 0.6730 1.0286 -11.2869 18 6 -0.4077 0.1133 -11.8022 19 1 -0.7599 -0.7041 -11.1905 20 6 -0.9460 0.3189 -13.0547 21 7 -0.5160 1.3134 -13.8000 22 14 -2.2851 -0.8162 -13.6935 23 1 -2.5885 -1.8486 -12.6703 24 1 -3.5100 -0.0260 -13.9771 25 1 -1.8217 -1.4757 -14.9407 26 6 2.1092 -0.3265 -9.7497 27 6 2.4895 -0.7309 -8.4851 28 1 -0.3634 0.5143 0.8896 29 1 -0.3633 0.5133 -0.8903 30 1 -0.3633 -1.0276 0.0005 31 1 1.6894 -0.1979 2.1400 32 1 1.6654 -1.7443 1.2582 33 1 3.9462 0.2862 1.2682 34 1 3.9373 -1.2872 2.1027 35 1 3.7126 -2.4534 -0.0591 36 1 5.1440 -1.3951 -0.0833 37 1 3.8176 -1.1699 -2.1733 38 1 3.8404 0.3533 -1.2529 39 1 0.3766 -0.3565 -2.4651 40 1 1.5588 0.9724 -2.3960 41 1 3.2107 -0.4348 -3.5960 42 1 2.0284 -1.7637 -3.6652 43 1 0.4825 -0.3221 -4.9609 44 1 1.6644 1.0071 -4.8923 45 1 2.9432 -1.2647 -5.9780 46 1 0.3056 1.1027 -6.6638 47 1 -0.3580 1.8224 -8.9217 48 1 0.2951 2.0502 -11.2464 49 1 1.5339 0.9859 -11.9542 50 1 -0.8945 1.4578 -14.6815 51 1 2.6114 -0.7270 -10.6178 52 1 3.2889 -1.4469 -8.3640 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001167751676.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:25:30 Heat of formation + Delta-G solvation = -11.703226 kcal Electronic energy + Delta-G solvation = -25360.837117 eV Core-core repulsion = 21936.961664 eV Total energy + Delta-G solvation = -3423.875453 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.51645 -40.18912 -37.42788 -35.57463 -34.77799 -33.65493 -32.56154 -31.63763 -30.84831 -28.28356 -27.79964 -26.29476 -24.91932 -24.48886 -23.19727 -22.26410 -21.65560 -21.46792 -20.54537 -18.48400 -18.04225 -17.28016 -16.75277 -16.62476 -16.34000 -16.19176 -15.73541 -15.32750 -15.14562 -14.91848 -14.85185 -14.53442 -14.46729 -14.17305 -14.08028 -13.85473 -13.45190 -13.19419 -13.17901 -12.92537 -12.87151 -12.75677 -12.58923 -12.51024 -12.35296 -12.33289 -12.00951 -11.83818 -11.62058 -11.58787 -11.52017 -11.35375 -11.11111 -11.07475 -10.58520 -10.53979 -9.67912 -9.23529 -8.30103 -7.95168 -6.30000 0.67640 0.89172 1.39770 1.39798 1.54020 2.41627 2.51266 2.95806 3.12743 3.16349 3.82786 3.86780 3.92500 4.04915 4.07731 4.14280 4.17218 4.24833 4.27534 4.43865 4.45404 4.51234 4.54849 4.59324 4.65609 4.72334 4.75260 4.76050 4.78949 4.86748 4.91939 4.98918 4.99929 5.07155 5.09481 5.19504 5.20107 5.23620 5.24508 5.27218 5.34478 5.37901 5.40902 5.50651 5.56080 5.70599 5.81498 6.03777 6.16506 6.21106 6.23725 6.25544 6.58820 6.83527 6.98378 7.38337 8.92247 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.029001 B = 0.001797 C = 0.001747 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 965.249692 B =15577.334978 C =16027.541771 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.079 3.921 3 H 0.033 0.967 4 C -0.110 4.110 5 C -0.122 4.122 6 C -0.116 4.116 7 C 0.046 3.954 8 N -0.539 5.539 9 C 0.060 3.940 10 C -0.119 4.119 11 C 0.130 3.870 12 N -0.744 5.744 13 C 0.197 3.803 14 C -0.194 4.194 15 C -0.091 4.091 16 C -0.125 4.125 17 C 0.062 3.938 18 C -0.525 4.525 19 H 0.052 0.948 20 C 0.001 3.999 21 N -0.932 5.932 22 Si 0.966 3.034 23 H -0.266 1.266 24 H -0.276 1.276 25 H -0.276 1.276 26 C -0.090 4.090 27 C -0.191 4.191 28 H 0.068 0.932 29 H 0.055 0.945 30 H 0.059 0.941 31 H 0.074 0.926 32 H 0.065 0.935 33 H 0.056 0.944 34 H 0.071 0.929 35 H 0.065 0.935 36 H 0.074 0.926 37 H 0.085 0.915 38 H 0.026 0.974 39 H 0.081 0.919 40 H 0.034 0.966 41 H 0.076 0.924 42 H 0.077 0.923 43 H 0.055 0.945 44 H 0.054 0.946 45 H 0.405 0.595 46 H 0.134 0.866 47 H 0.109 0.891 48 H -0.003 1.003 49 H -0.002 1.002 50 H 0.264 0.736 51 H 0.111 0.889 52 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.067 -4.826 33.519 34.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.029 4.029 3 H 0.051 0.949 4 C -0.147 4.147 5 C -0.160 4.160 6 C -0.154 4.154 7 C -0.081 4.081 8 N -0.264 5.264 9 C -0.068 4.068 10 C -0.157 4.157 11 C 0.005 3.995 12 N -0.377 5.377 13 C 0.094 3.906 14 C -0.217 4.217 15 C -0.109 4.109 16 C -0.127 4.127 17 C 0.026 3.974 18 C -0.563 4.563 19 H 0.070 0.930 20 C -0.197 4.197 21 N -0.573 5.573 22 Si 0.790 3.210 23 H -0.190 1.190 24 H -0.201 1.201 25 H -0.201 1.201 26 C -0.109 4.109 27 C -0.213 4.213 28 H 0.087 0.913 29 H 0.074 0.926 30 H 0.079 0.921 31 H 0.093 0.907 32 H 0.084 0.916 33 H 0.075 0.925 34 H 0.090 0.910 35 H 0.084 0.916 36 H 0.093 0.907 37 H 0.103 0.897 38 H 0.045 0.955 39 H 0.099 0.901 40 H 0.052 0.948 41 H 0.095 0.905 42 H 0.095 0.905 43 H 0.073 0.927 44 H 0.072 0.928 45 H 0.241 0.759 46 H 0.151 0.849 47 H 0.127 0.873 48 H 0.016 0.984 49 H 0.016 0.984 50 H 0.073 0.927 51 H 0.129 0.871 52 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 7.778 -5.134 33.561 34.831 hybrid contribution -0.220 0.509 -1.075 1.210 sum 7.557 -4.625 32.485 33.672 Atomic orbital electron populations 1.21892 0.93833 1.02471 1.02235 1.21686 0.95801 0.94976 0.90455 0.94925 1.21623 0.95667 1.01106 0.96335 1.21598 0.95636 1.00660 0.98088 1.21589 1.00203 0.99818 0.93788 1.22261 0.87227 0.98793 0.99851 1.62051 1.07410 1.55151 1.01831 1.22004 0.99765 0.96498 0.88498 1.21763 1.00409 1.01507 0.91989 1.21227 0.96415 0.97706 0.84109 1.44436 1.41633 1.50261 1.01335 1.17691 0.93499 0.93645 0.85741 1.20672 1.01103 1.03006 0.96889 1.20840 0.98606 0.99373 0.92106 1.20154 0.97408 0.99206 0.95886 1.17991 0.94981 0.95072 0.89404 1.21481 1.20290 1.13520 1.00985 0.92954 1.25956 0.99530 0.97124 0.97055 1.70100 1.44334 1.31687 1.11130 0.85388 0.78597 0.78759 0.78256 1.19007 1.20136 1.20104 1.20841 0.96472 0.96396 0.97144 1.20677 1.04348 1.05494 0.90768 0.91267 0.92605 0.92143 0.90717 0.91594 0.92480 0.90989 0.91628 0.90745 0.89708 0.95528 0.90059 0.94823 0.90534 0.90467 0.92723 0.92779 0.75938 0.84860 0.87281 0.98422 0.98353 0.92675 0.87083 0.84282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.66 8.78 71.98 0.63 -1.02 16 2 C 0.08 0.98 2.40 44.94 0.11 1.09 16 3 H 0.03 0.45 8.14 -2.38 -0.02 0.43 16 4 C -0.11 -1.16 5.37 30.65 0.16 -0.99 16 5 C -0.12 -1.20 6.01 30.68 0.18 -1.02 16 6 C -0.12 -1.23 6.09 30.65 0.19 -1.05 16 7 C 0.05 0.57 4.85 86.32 0.42 0.99 16 8 N -0.54 -7.32 4.64 -871.09 -4.04 -11.36 16 9 C 0.06 0.81 4.36 86.30 0.38 1.19 16 10 C -0.12 -1.57 4.58 30.59 0.14 -1.43 16 11 C 0.13 2.29 4.91 86.38 0.42 2.72 16 12 N -0.74 -16.16 5.73 -339.42 -1.95 -18.11 16 13 C 0.20 5.98 6.65 38.21 0.25 6.24 16 14 C -0.19 -6.51 9.31 22.40 0.21 -6.31 16 15 C -0.09 -3.75 9.69 22.25 0.22 -3.53 16 16 C -0.12 -5.85 5.07 -19.84 -0.10 -5.95 16 17 C 0.06 3.53 5.10 29.10 0.15 3.67 16 18 C -0.52 -31.27 9.09 25.60 0.23 -31.03 16 19 H 0.05 3.09 7.74 -2.91 -0.02 3.07 16 20 C 0.00 0.05 5.46 84.65 0.46 0.51 16 21 N -0.93 -57.82 13.29 21.44 0.28 -57.53 16 22 Si 0.97 45.62 29.54 68.60 2.03 47.64 16 23 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 24 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 25 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 26 C -0.09 -3.68 9.69 22.25 0.22 -3.47 16 27 C -0.19 -6.25 9.90 22.40 0.22 -6.03 16 28 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 29 H 0.05 0.65 6.55 -2.39 -0.02 0.64 16 30 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 31 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 32 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 33 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 34 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 35 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 36 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 37 H 0.08 0.99 5.81 -2.39 -0.01 0.97 16 38 H 0.03 0.35 8.14 -2.39 -0.02 0.33 16 39 H 0.08 1.11 6.84 -2.39 -0.02 1.09 16 40 H 0.03 0.47 8.08 -2.39 -0.02 0.45 16 41 H 0.08 0.95 6.21 -2.38 -0.01 0.93 16 42 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 43 H 0.05 1.03 7.94 -2.38 -0.02 1.01 16 44 H 0.05 0.99 7.96 -2.39 -0.02 0.97 16 45 H 0.40 7.15 8.49 -92.71 -0.79 6.36 16 46 H 0.13 3.73 6.73 -2.91 -0.02 3.71 16 47 H 0.11 4.50 8.06 -2.91 -0.02 4.47 16 48 H 0.00 -0.15 8.08 -2.39 -0.02 -0.17 16 49 H 0.00 -0.11 8.08 -2.39 -0.02 -0.13 16 50 H 0.26 15.29 8.31 -92.70 -0.77 14.52 16 51 H 0.11 4.52 8.06 -2.91 -0.02 4.49 16 52 H 0.14 3.63 8.06 -2.91 -0.02 3.61 16 Total: -1.00 -67.85 402.40 0.90 -66.96 By element: Atomic # 1 Polarization: 17.74 SS G_CDS: 0.08 Total: 17.83 kcal Atomic # 6 Polarization: -49.91 SS G_CDS: 4.49 Total: -45.42 kcal Atomic # 7 Polarization: -81.30 SS G_CDS: -5.70 Total: -87.00 kcal Atomic # 14 Polarization: 45.62 SS G_CDS: 2.03 Total: 47.64 kcal Total: -67.85 0.90 -66.96 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167751676.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.253 kcal (2) G-P(sol) polarization free energy of solvation -67.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.956 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds