Wall clock time and date at job start Tue Mar 31 2020 11:25:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09004 * 109.46471 * 2 1 4 4 C 1.53040 * 109.46445 * 240.02581 * 2 1 3 5 5 C 1.53114 * 109.27742 * 180.80612 * 4 2 1 6 6 C 1.53121 * 109.16277 * 57.65551 * 5 4 2 7 7 C 1.53032 * 109.27758 * 302.34539 * 6 5 4 8 8 N 1.46845 * 109.52550 * 59.17695 * 7 6 5 9 9 C 1.46903 * 111.00233 * 174.15994 * 8 7 6 10 10 C 1.53000 * 109.46725 * 289.70182 * 9 8 7 11 11 C 1.53008 * 109.46721 * 180.02562 * 10 9 8 12 12 N 1.46500 * 109.46674 * 179.97438 * 11 10 9 13 13 C 1.39683 * 119.99660 * 179.97438 * 12 11 10 14 14 C 1.38908 * 120.07175 * 359.72696 * 13 12 11 15 15 C 1.38109 * 119.92053 * 179.76723 * 14 13 12 16 16 C 1.38285 * 120.07451 * 0.50627 * 15 14 13 17 17 C 1.50705 * 119.92329 * 179.72409 * 16 15 14 18 18 C 1.50700 * 109.46790 * 270.02422 * 17 16 15 19 19 H 1.07998 * 120.00401 * 359.97438 * 18 17 16 20 20 C 1.37878 * 119.99698 * 180.02562 * 18 17 16 21 21 N 1.31511 * 119.99924 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 120.00121 * 179.97438 * 20 18 17 23 23 H 1.48506 * 109.46769 * 0.02562 * 22 20 18 24 24 H 1.48503 * 109.47075 * 119.99992 * 22 20 18 25 25 H 1.48500 * 109.47459 * 240.00282 * 22 20 18 26 26 C 1.38281 * 120.14780 * 359.74726 * 16 15 14 27 27 C 1.38103 * 120.07804 * 359.97438 * 26 16 15 28 28 H 1.09001 * 109.47156 * 307.32205 * 1 2 3 29 29 H 1.08999 * 109.46930 * 67.32070 * 1 2 3 30 30 H 1.09002 * 109.47384 * 187.31876 * 1 2 3 31 31 H 1.08992 * 109.50218 * 300.74867 * 4 2 1 32 32 H 1.09003 * 109.49804 * 60.82763 * 4 2 1 33 33 H 1.09006 * 109.52447 * 177.56244 * 5 4 2 34 34 H 1.09009 * 109.52692 * 297.74920 * 5 4 2 35 35 H 1.08996 * 109.50238 * 62.28671 * 6 5 4 36 36 H 1.09002 * 109.50345 * 182.40533 * 6 5 4 37 37 H 1.09008 * 109.46127 * 299.16014 * 7 6 5 38 38 H 1.09000 * 109.46570 * 179.19482 * 7 6 5 39 39 H 1.08999 * 109.47008 * 169.70181 * 9 8 7 40 40 H 1.08993 * 109.47207 * 49.69714 * 9 8 7 41 41 H 1.08999 * 109.47378 * 60.00226 * 10 9 8 42 42 H 1.09002 * 109.47455 * 299.99584 * 10 9 8 43 43 H 1.08999 * 109.47024 * 59.99991 * 11 10 9 44 44 H 1.09002 * 109.46802 * 299.99966 * 11 10 9 45 45 H 0.96989 * 120.00355 * 359.97438 * 12 11 10 46 46 H 1.07998 * 120.04277 * 359.97438 * 14 13 12 47 47 H 1.08004 * 119.96152 * 180.25473 * 15 14 13 48 48 H 1.08998 * 109.46976 * 30.02181 * 17 16 15 49 49 H 1.08997 * 109.46963 * 150.01889 * 17 16 15 50 50 H 0.97005 * 120.00283 * 179.97438 * 21 20 18 51 51 H 1.08004 * 119.95472 * 180.02562 * 26 16 15 52 52 H 1.07998 * 120.03751 * 180.02562 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0399 -0.7209 -1.2499 5 6 3.5709 -0.7360 -1.2355 6 6 4.0547 -1.4188 0.0468 7 6 3.4864 -0.6777 1.2591 8 7 2.0192 -0.6917 1.1994 9 6 1.4372 -0.1106 2.4166 10 6 1.6697 -1.0577 3.5954 11 6 1.0629 -0.4527 4.8631 12 7 1.2850 -1.3599 5.9917 13 6 0.8177 -1.0200 7.2634 14 6 0.1472 0.1805 7.4606 15 6 -0.3178 0.5112 8.7183 16 6 -0.1073 -0.3462 9.7826 17 6 -0.6107 0.0210 11.1548 18 6 0.4543 0.7926 11.8907 19 1 1.4011 0.9963 11.4127 20 6 0.2204 1.2376 13.1745 21 7 -0.9324 0.9891 13.7567 22 14 1.5407 2.1934 14.0870 23 1 2.7361 2.3390 13.2179 24 1 1.0213 3.5383 14.4431 25 1 1.9141 1.4632 15.3250 26 6 0.5645 -1.5396 9.5907 27 6 1.0270 -1.8792 8.3346 28 1 -0.3633 0.6231 0.8172 29 1 -0.3633 0.3962 -0.9482 30 1 -0.3634 -1.0193 0.1309 31 1 1.6659 -1.7446 -1.2576 32 1 1.6889 -0.1985 -2.1399 33 1 3.9380 -1.2863 -2.1019 34 1 3.9457 0.2871 -1.2671 35 1 3.7125 -2.4536 0.0595 36 1 5.1439 -1.3947 0.0833 37 1 3.8403 0.3533 1.2533 38 1 3.8173 -1.1699 2.1736 39 1 0.3665 0.0353 2.2734 40 1 1.9103 0.8494 2.6230 41 1 2.7404 -1.2036 3.7386 42 1 1.1965 -2.0178 3.3891 43 1 -0.0078 -0.3072 4.7196 44 1 1.5357 0.5075 5.0696 45 1 1.7566 -2.1965 5.8560 46 1 -0.0133 0.8528 6.6308 47 1 -0.8429 1.4425 8.8716 48 1 -1.5056 0.6362 11.0609 49 1 -0.8502 -0.8866 11.7089 50 1 -1.0969 1.3018 14.6601 51 1 0.7268 -2.2071 10.4241 52 1 1.5512 -2.8115 8.1853 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001167751677.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:25:34 Heat of formation + Delta-G solvation = 2.997198 kcal Electronic energy + Delta-G solvation = -25330.345391 eV Core-core repulsion = 21907.107396 eV Total energy + Delta-G solvation = -3423.237995 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.83220 -38.84360 -36.31498 -34.49281 -33.18848 -32.84504 -31.41265 -30.15063 -29.53953 -27.53567 -26.50149 -25.22291 -23.78168 -22.73446 -22.18563 -21.56582 -20.90460 -20.07190 -19.89787 -16.79724 -16.53344 -16.20503 -16.05193 -15.39000 -15.34672 -14.84389 -14.76396 -14.53870 -14.30563 -14.09899 -13.67883 -13.37900 -13.12189 -13.02831 -12.67094 -12.64204 -12.40485 -12.37403 -12.25496 -11.92911 -11.85323 -11.58836 -11.41014 -11.27078 -11.17463 -11.14853 -11.00999 -10.64643 -10.60706 -10.52591 -10.47503 -10.05452 -9.70833 -9.37862 -8.95959 -8.68252 -8.35261 -8.18200 -6.71407 -5.94897 -3.99249 2.17643 2.42325 3.33180 3.33345 3.40743 3.46356 3.78178 4.32920 4.37414 4.44612 4.46836 4.61714 4.71529 4.77366 4.85846 4.89512 4.98081 5.01178 5.09380 5.19690 5.22447 5.28014 5.37625 5.40315 5.44597 5.47551 5.49340 5.52509 5.58066 5.61041 5.64425 5.71982 5.73884 5.82145 5.91929 5.93597 6.00638 6.10893 6.19431 6.37860 6.50478 6.73608 6.76234 6.77211 6.91460 7.35323 7.35440 7.49167 7.65781 7.90740 8.00721 8.02429 8.11550 8.44504 9.06970 9.64072 11.13361 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.027304 B = 0.001784 C = 0.001767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1025.226840 B =15694.085888 C =15843.483063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.081 3.919 3 H 0.038 0.962 4 C -0.111 4.111 5 C -0.123 4.123 6 C -0.117 4.117 7 C 0.052 3.948 8 N -0.533 5.533 9 C 0.052 3.948 10 C -0.124 4.124 11 C 0.133 3.867 12 N -0.758 5.758 13 C 0.181 3.819 14 C -0.195 4.195 15 C -0.081 4.081 16 C -0.085 4.085 17 C 0.052 3.948 18 C -0.507 4.507 19 H 0.057 0.943 20 C 0.056 3.944 21 N -0.896 5.896 22 Si 0.892 3.108 23 H -0.273 1.273 24 H -0.284 1.284 25 H -0.284 1.284 26 C -0.080 4.080 27 C -0.194 4.194 28 H 0.058 0.942 29 H 0.060 0.940 30 H 0.066 0.934 31 H 0.071 0.929 32 H 0.065 0.935 33 H 0.063 0.937 34 H 0.057 0.943 35 H 0.071 0.929 36 H 0.065 0.935 37 H 0.031 0.969 38 H 0.078 0.922 39 H 0.084 0.916 40 H 0.036 0.964 41 H 0.066 0.934 42 H 0.075 0.925 43 H 0.054 0.946 44 H 0.052 0.948 45 H 0.393 0.607 46 H 0.108 0.892 47 H 0.115 0.885 48 H 0.025 0.975 49 H 0.025 0.975 50 H 0.260 0.740 51 H 0.116 0.884 52 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.455 -4.398 -31.314 32.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.027 4.027 3 H 0.056 0.944 4 C -0.149 4.149 5 C -0.160 4.160 6 C -0.155 4.155 7 C -0.075 4.075 8 N -0.258 5.258 9 C -0.076 4.076 10 C -0.162 4.162 11 C 0.007 3.993 12 N -0.391 5.391 13 C 0.082 3.918 14 C -0.217 4.217 15 C -0.100 4.100 16 C -0.087 4.087 17 C 0.016 3.984 18 C -0.545 4.545 19 H 0.075 0.925 20 C -0.145 4.145 21 N -0.536 5.536 22 Si 0.720 3.280 23 H -0.197 1.197 24 H -0.210 1.210 25 H -0.210 1.210 26 C -0.099 4.099 27 C -0.216 4.216 28 H 0.077 0.923 29 H 0.079 0.921 30 H 0.085 0.915 31 H 0.090 0.910 32 H 0.083 0.917 33 H 0.082 0.918 34 H 0.076 0.924 35 H 0.089 0.911 36 H 0.084 0.916 37 H 0.050 0.950 38 H 0.096 0.904 39 H 0.102 0.898 40 H 0.054 0.946 41 H 0.084 0.916 42 H 0.094 0.906 43 H 0.072 0.928 44 H 0.070 0.930 45 H 0.226 0.774 46 H 0.126 0.874 47 H 0.133 0.867 48 H 0.043 0.957 49 H 0.043 0.957 50 H 0.070 0.930 51 H 0.134 0.866 52 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 6.152 -4.687 -31.310 32.251 hybrid contribution 1.216 1.148 0.624 1.785 sum 7.368 -3.539 -30.686 31.756 Atomic orbital electron populations 1.21950 0.94255 1.02823 1.01759 1.21604 0.95404 0.95340 0.90365 0.94362 1.21630 0.95418 1.01509 0.96353 1.21593 0.95892 1.00617 0.97915 1.21584 0.99682 1.00299 0.93928 1.22141 0.87362 0.98893 0.99141 1.61930 1.07020 1.55113 1.01711 1.22106 1.00731 0.95607 0.89140 1.21716 1.01506 0.99960 0.92994 1.21097 0.99656 0.93280 0.85272 1.44362 1.65758 1.23700 1.05282 1.17606 0.95463 0.94150 0.84608 1.20504 1.06357 0.97034 0.97815 1.20847 0.98675 0.98854 0.91599 1.20457 0.97627 0.93248 0.97355 1.18253 0.96288 0.96957 0.86942 1.21182 1.00563 1.34153 0.98609 0.92513 1.25023 0.95557 0.96365 0.97566 1.69972 1.22806 1.46702 1.14070 0.86523 0.82042 0.79691 0.79713 1.19721 1.21041 1.21024 1.20826 0.96810 0.96819 0.95418 1.20461 1.08102 1.00271 0.92761 0.92350 0.92124 0.91492 0.91012 0.91656 0.91811 0.92393 0.91053 0.91627 0.95041 0.90410 0.89791 0.94618 0.91570 0.90611 0.92794 0.92994 0.77365 0.87434 0.86682 0.95687 0.95678 0.93045 0.86608 0.87451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.94 8.56 37.16 0.32 -0.62 16 2 C 0.08 0.56 2.44 -67.72 -0.17 0.39 16 3 H 0.04 0.29 8.14 -51.93 -0.42 -0.14 16 4 C -0.11 -0.67 5.37 -26.65 -0.14 -0.81 16 5 C -0.12 -0.71 6.00 -26.61 -0.16 -0.87 16 6 C -0.12 -0.73 6.09 -26.65 -0.16 -0.89 16 7 C 0.05 0.38 5.30 -3.84 -0.02 0.36 16 8 N -0.53 -4.08 4.46 -226.69 -1.01 -5.09 16 9 C 0.05 0.41 4.75 -3.82 -0.02 0.39 16 10 C -0.12 -1.02 5.35 -26.73 -0.14 -1.16 16 11 C 0.13 1.39 4.91 -4.04 -0.02 1.37 16 12 N -0.76 -9.66 5.73 -58.63 -0.34 -9.99 16 13 C 0.18 3.00 6.65 -83.79 -0.56 2.45 16 14 C -0.19 -3.43 9.31 -39.38 -0.37 -3.80 16 15 C -0.08 -1.66 9.69 -39.61 -0.38 -2.04 16 16 C -0.09 -1.93 5.07 -104.59 -0.53 -2.46 16 17 C 0.05 1.39 5.10 -29.03 -0.15 1.25 16 18 C -0.51 -14.58 9.09 -34.44 -0.31 -14.90 16 19 H 0.06 1.63 7.74 -52.49 -0.41 1.23 16 20 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 21 N -0.90 -27.00 13.29 55.43 0.74 -26.27 16 22 Si 0.89 21.98 29.54 -169.99 -5.02 16.96 16 23 H -0.27 -6.63 7.11 56.52 0.40 -6.22 16 24 H -0.28 -6.91 7.11 56.52 0.40 -6.50 16 25 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 26 C -0.08 -1.63 9.69 -39.62 -0.38 -2.01 16 27 C -0.19 -3.38 9.90 -39.38 -0.39 -3.77 16 28 H 0.06 0.37 6.46 -51.93 -0.34 0.03 16 29 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 30 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 33 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 34 H 0.06 0.34 8.14 -51.92 -0.42 -0.08 16 35 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 37 H 0.03 0.24 8.14 -51.92 -0.42 -0.18 16 38 H 0.08 0.57 6.42 -51.93 -0.33 0.24 16 39 H 0.08 0.63 5.61 -51.93 -0.29 0.34 16 40 H 0.04 0.29 8.07 -51.93 -0.42 -0.13 16 41 H 0.07 0.55 6.59 -51.93 -0.34 0.21 16 42 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 43 H 0.05 0.58 7.96 -51.93 -0.41 0.16 16 44 H 0.05 0.58 7.94 -51.93 -0.41 0.17 16 45 H 0.39 4.34 8.48 -40.82 -0.35 4.00 16 46 H 0.11 1.65 6.73 -52.49 -0.35 1.29 16 47 H 0.12 2.28 8.06 -52.48 -0.42 1.86 16 48 H 0.02 0.69 8.08 -51.93 -0.42 0.27 16 49 H 0.02 0.69 8.08 -51.93 -0.42 0.27 16 50 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 51 H 0.12 2.29 8.06 -52.48 -0.42 1.86 16 52 H 0.11 1.60 8.06 -52.49 -0.42 1.17 16 LS Contribution 403.31 15.07 6.08 6.08 Total: -1.00 -30.77 403.31 -12.78 -43.55 By element: Atomic # 1 Polarization: 9.93 SS G_CDS: -9.55 Total: 0.38 kcal Atomic # 6 Polarization: -21.94 SS G_CDS: -3.68 Total: -25.63 kcal Atomic # 7 Polarization: -40.73 SS G_CDS: -0.61 Total: -41.35 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.96 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -30.77 -12.78 -43.55 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167751677.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.551 kcal (2) G-P(sol) polarization free energy of solvation -30.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.782 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.554 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds