Wall clock time and date at job start Tue Mar 31 2020 11:25:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09004 * 109.46471 * 2 1 4 4 C 1.53040 * 109.46445 * 240.02581 * 2 1 3 5 5 C 1.53114 * 109.27742 * 180.80612 * 4 2 1 6 6 C 1.53121 * 109.16277 * 57.65551 * 5 4 2 7 7 C 1.53032 * 109.27758 * 302.34539 * 6 5 4 8 8 N 1.46845 * 109.52550 * 59.17695 * 7 6 5 9 9 C 1.46903 * 111.00233 * 174.15994 * 8 7 6 10 10 C 1.53000 * 109.46725 * 289.70182 * 9 8 7 11 11 C 1.53008 * 109.46721 * 180.02562 * 10 9 8 12 12 N 1.46500 * 109.46674 * 179.97438 * 11 10 9 13 13 C 1.39683 * 119.99660 * 179.97438 * 12 11 10 14 14 C 1.38908 * 120.07175 * 359.72696 * 13 12 11 15 15 C 1.38109 * 119.92053 * 179.76723 * 14 13 12 16 16 C 1.38285 * 120.07451 * 0.50627 * 15 14 13 17 17 C 1.50705 * 119.92329 * 179.72409 * 16 15 14 18 18 C 1.50700 * 109.46790 * 270.02422 * 17 16 15 19 19 H 1.07998 * 120.00401 * 359.97438 * 18 17 16 20 20 C 1.37878 * 119.99698 * 180.02562 * 18 17 16 21 21 N 1.31511 * 119.99924 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 120.00121 * 179.97438 * 20 18 17 23 23 H 1.48506 * 109.46769 * 0.02562 * 22 20 18 24 24 H 1.48503 * 109.47075 * 119.99992 * 22 20 18 25 25 H 1.48500 * 109.47459 * 240.00282 * 22 20 18 26 26 C 1.38281 * 120.14780 * 359.74726 * 16 15 14 27 27 C 1.38103 * 120.07804 * 359.97438 * 26 16 15 28 28 H 1.09001 * 109.47156 * 307.32205 * 1 2 3 29 29 H 1.08999 * 109.46930 * 67.32070 * 1 2 3 30 30 H 1.09002 * 109.47384 * 187.31876 * 1 2 3 31 31 H 1.08992 * 109.50218 * 300.74867 * 4 2 1 32 32 H 1.09003 * 109.49804 * 60.82763 * 4 2 1 33 33 H 1.09006 * 109.52447 * 177.56244 * 5 4 2 34 34 H 1.09009 * 109.52692 * 297.74920 * 5 4 2 35 35 H 1.08996 * 109.50238 * 62.28671 * 6 5 4 36 36 H 1.09002 * 109.50345 * 182.40533 * 6 5 4 37 37 H 1.09008 * 109.46127 * 299.16014 * 7 6 5 38 38 H 1.09000 * 109.46570 * 179.19482 * 7 6 5 39 39 H 1.08999 * 109.47008 * 169.70181 * 9 8 7 40 40 H 1.08993 * 109.47207 * 49.69714 * 9 8 7 41 41 H 1.08999 * 109.47378 * 60.00226 * 10 9 8 42 42 H 1.09002 * 109.47455 * 299.99584 * 10 9 8 43 43 H 1.08999 * 109.47024 * 59.99991 * 11 10 9 44 44 H 1.09002 * 109.46802 * 299.99966 * 11 10 9 45 45 H 0.96989 * 120.00355 * 359.97438 * 12 11 10 46 46 H 1.07998 * 120.04277 * 359.97438 * 14 13 12 47 47 H 1.08004 * 119.96152 * 180.25473 * 15 14 13 48 48 H 1.08998 * 109.46976 * 30.02181 * 17 16 15 49 49 H 1.08997 * 109.46963 * 150.01889 * 17 16 15 50 50 H 0.97005 * 120.00283 * 179.97438 * 21 20 18 51 51 H 1.08004 * 119.95472 * 180.02562 * 26 16 15 52 52 H 1.07998 * 120.03751 * 180.02562 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0399 -0.7209 -1.2499 5 6 3.5709 -0.7360 -1.2355 6 6 4.0547 -1.4188 0.0468 7 6 3.4864 -0.6777 1.2591 8 7 2.0192 -0.6917 1.1994 9 6 1.4372 -0.1106 2.4166 10 6 1.6697 -1.0577 3.5954 11 6 1.0629 -0.4527 4.8631 12 7 1.2850 -1.3599 5.9917 13 6 0.8177 -1.0200 7.2634 14 6 0.1472 0.1805 7.4606 15 6 -0.3178 0.5112 8.7183 16 6 -0.1073 -0.3462 9.7826 17 6 -0.6107 0.0210 11.1548 18 6 0.4543 0.7926 11.8907 19 1 1.4011 0.9963 11.4127 20 6 0.2204 1.2376 13.1745 21 7 -0.9324 0.9891 13.7567 22 14 1.5407 2.1934 14.0870 23 1 2.7361 2.3390 13.2179 24 1 1.0213 3.5383 14.4431 25 1 1.9141 1.4632 15.3250 26 6 0.5645 -1.5396 9.5907 27 6 1.0270 -1.8792 8.3346 28 1 -0.3633 0.6231 0.8172 29 1 -0.3633 0.3962 -0.9482 30 1 -0.3634 -1.0193 0.1309 31 1 1.6659 -1.7446 -1.2576 32 1 1.6889 -0.1985 -2.1399 33 1 3.9380 -1.2863 -2.1019 34 1 3.9457 0.2871 -1.2671 35 1 3.7125 -2.4536 0.0595 36 1 5.1439 -1.3947 0.0833 37 1 3.8403 0.3533 1.2533 38 1 3.8173 -1.1699 2.1736 39 1 0.3665 0.0353 2.2734 40 1 1.9103 0.8494 2.6230 41 1 2.7404 -1.2036 3.7386 42 1 1.1965 -2.0178 3.3891 43 1 -0.0078 -0.3072 4.7196 44 1 1.5357 0.5075 5.0696 45 1 1.7566 -2.1965 5.8560 46 1 -0.0133 0.8528 6.6308 47 1 -0.8429 1.4425 8.8716 48 1 -1.5056 0.6362 11.0609 49 1 -0.8502 -0.8866 11.7089 50 1 -1.0969 1.3018 14.6601 51 1 0.7268 -2.2071 10.4241 52 1 1.5512 -2.8115 8.1853 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001167751677.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:25:33 Heat of formation + Delta-G solvation = -13.135502 kcal Electronic energy + Delta-G solvation = -25331.044958 eV Core-core repulsion = 21907.107396 eV Total energy + Delta-G solvation = -3423.937562 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.46039 -40.17882 -37.41654 -35.54772 -34.77184 -33.58668 -32.61862 -31.63568 -30.91651 -28.28104 -27.81448 -26.27577 -24.75326 -24.42256 -23.22101 -22.27130 -21.75176 -21.46966 -20.56008 -18.48473 -18.03950 -17.24038 -16.78459 -16.70160 -16.30102 -16.03740 -15.73640 -15.34798 -15.14846 -14.95221 -14.86439 -14.56384 -14.44112 -14.18094 -14.04738 -13.87108 -13.39107 -13.20567 -13.18262 -12.93710 -12.85834 -12.73114 -12.58299 -12.50333 -12.38710 -12.35768 -11.95816 -11.83425 -11.61660 -11.58821 -11.52184 -11.35863 -11.13336 -11.03227 -10.58552 -10.53510 -9.67648 -9.26391 -8.29955 -7.94797 -6.29991 0.67960 0.89576 1.39479 1.39516 1.53648 2.41447 2.50936 2.96826 3.12659 3.16707 3.83073 3.86201 3.92351 4.05640 4.11920 4.16499 4.18603 4.25313 4.30626 4.44371 4.46068 4.51614 4.53846 4.58689 4.68417 4.69588 4.74051 4.77459 4.79238 4.87812 4.92000 4.97188 5.01734 5.07695 5.10008 5.20439 5.22460 5.23594 5.24684 5.31181 5.34572 5.38233 5.41186 5.50899 5.56453 5.70791 5.81643 6.04442 6.16905 6.21453 6.23980 6.25697 6.59570 6.83541 6.98891 7.38251 8.92246 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.027304 B = 0.001784 C = 0.001767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1025.226840 B =15694.085888 C =15843.483063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.079 3.921 3 H 0.033 0.967 4 C -0.109 4.109 5 C -0.122 4.122 6 C -0.115 4.115 7 C 0.051 3.949 8 N -0.538 5.538 9 C 0.054 3.946 10 C -0.109 4.109 11 C 0.130 3.870 12 N -0.745 5.745 13 C 0.197 3.803 14 C -0.194 4.194 15 C -0.090 4.090 16 C -0.125 4.125 17 C 0.063 3.937 18 C -0.525 4.525 19 H 0.052 0.948 20 C 0.001 3.999 21 N -0.932 5.932 22 Si 0.965 3.035 23 H -0.266 1.266 24 H -0.276 1.276 25 H -0.275 1.275 26 C -0.090 4.090 27 C -0.191 4.191 28 H 0.056 0.944 29 H 0.070 0.930 30 H 0.060 0.940 31 H 0.066 0.934 32 H 0.075 0.925 33 H 0.072 0.928 34 H 0.056 0.944 35 H 0.066 0.934 36 H 0.073 0.927 37 H 0.026 0.974 38 H 0.077 0.923 39 H 0.087 0.913 40 H 0.032 0.968 41 H 0.068 0.932 42 H 0.075 0.925 43 H 0.057 0.943 44 H 0.051 0.949 45 H 0.405 0.595 46 H 0.134 0.866 47 H 0.109 0.891 48 H -0.002 1.002 49 H -0.002 1.002 50 H 0.264 0.736 51 H 0.111 0.889 52 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.210 -4.487 -33.652 34.929 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.030 4.030 3 H 0.051 0.949 4 C -0.147 4.147 5 C -0.160 4.160 6 C -0.153 4.153 7 C -0.077 4.077 8 N -0.263 5.263 9 C -0.074 4.074 10 C -0.147 4.147 11 C 0.005 3.995 12 N -0.377 5.377 13 C 0.094 3.906 14 C -0.217 4.217 15 C -0.109 4.109 16 C -0.127 4.127 17 C 0.026 3.974 18 C -0.563 4.563 19 H 0.070 0.930 20 C -0.197 4.197 21 N -0.572 5.572 22 Si 0.790 3.210 23 H -0.190 1.190 24 H -0.201 1.201 25 H -0.201 1.201 26 C -0.108 4.108 27 C -0.213 4.213 28 H 0.075 0.925 29 H 0.089 0.911 30 H 0.079 0.921 31 H 0.084 0.916 32 H 0.093 0.907 33 H 0.090 0.910 34 H 0.075 0.925 35 H 0.084 0.916 36 H 0.092 0.908 37 H 0.045 0.955 38 H 0.095 0.905 39 H 0.105 0.895 40 H 0.051 0.949 41 H 0.087 0.913 42 H 0.094 0.906 43 H 0.075 0.925 44 H 0.069 0.931 45 H 0.240 0.760 46 H 0.152 0.848 47 H 0.127 0.873 48 H 0.016 0.984 49 H 0.016 0.984 50 H 0.073 0.927 51 H 0.129 0.871 52 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 7.922 -4.794 -33.697 34.946 hybrid contribution 0.666 1.129 1.195 1.773 sum 8.588 -3.665 -32.503 33.817 Atomic orbital electron populations 1.21924 0.93783 1.02460 1.02305 1.21663 0.95808 0.95048 0.90435 0.94943 1.21621 0.95595 1.01154 0.96332 1.21596 0.95708 1.00641 0.98016 1.21573 1.00157 0.99825 0.93750 1.22170 0.87200 0.98711 0.99600 1.61955 1.07268 1.55230 1.01866 1.22066 1.00962 0.95271 0.89108 1.21563 1.01399 0.99781 0.91996 1.21238 1.00093 0.92943 0.85208 1.44451 1.64474 1.24415 1.04331 1.17697 0.93737 0.93206 0.85925 1.20670 1.05848 0.97948 0.97207 1.20840 0.99211 0.98460 0.92393 1.20156 1.01047 0.95605 0.95871 1.17991 0.95037 0.94951 0.89459 1.21481 1.00830 1.34649 0.99319 0.92969 1.25958 0.97958 0.97293 0.98460 1.70097 1.24819 1.47706 1.14610 0.85392 0.79034 0.78275 0.78312 1.19025 1.20132 1.20095 1.20838 0.97102 0.96016 0.96886 1.20674 1.07539 1.01515 0.91599 0.92474 0.91127 0.92069 0.91562 0.90667 0.90966 0.92475 0.91561 0.90823 0.95543 0.90498 0.89483 0.94934 0.91303 0.90594 0.92466 0.93062 0.75966 0.84844 0.87266 0.98404 0.98352 0.92670 0.87091 0.84320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.59 8.56 71.98 0.62 -0.97 16 2 C 0.08 0.95 2.44 44.94 0.11 1.06 16 3 H 0.03 0.44 8.14 -2.38 -0.02 0.42 16 4 C -0.11 -1.13 5.37 30.65 0.16 -0.96 16 5 C -0.12 -1.19 6.00 30.67 0.18 -1.01 16 6 C -0.12 -1.24 6.09 30.65 0.19 -1.05 16 7 C 0.05 0.65 5.30 86.32 0.46 1.11 16 8 N -0.54 -7.27 4.46 -871.11 -3.88 -11.15 16 9 C 0.05 0.73 4.75 86.30 0.41 1.14 16 10 C -0.11 -1.50 5.35 30.60 0.16 -1.34 16 11 C 0.13 2.32 4.91 86.38 0.42 2.75 16 12 N -0.74 -16.45 5.73 -339.40 -1.95 -18.39 16 13 C 0.20 6.03 6.65 38.21 0.25 6.28 16 14 C -0.19 -6.54 9.31 22.40 0.21 -6.33 16 15 C -0.09 -3.75 9.69 22.25 0.22 -3.53 16 16 C -0.12 -5.87 5.07 -19.84 -0.10 -5.97 16 17 C 0.06 3.54 5.10 29.10 0.15 3.68 16 18 C -0.52 -31.29 9.09 25.60 0.23 -31.05 16 19 H 0.05 3.08 7.74 -2.91 -0.02 3.06 16 20 C 0.00 0.05 5.46 84.66 0.46 0.51 16 21 N -0.93 -57.82 13.29 21.45 0.28 -57.54 16 22 Si 0.97 45.62 29.54 68.60 2.03 47.65 16 23 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 24 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 25 H -0.28 -12.56 7.11 99.48 0.71 -11.86 16 26 C -0.09 -3.69 9.69 22.25 0.22 -3.48 16 27 C -0.19 -6.31 9.90 22.40 0.22 -6.09 16 28 H 0.06 0.62 6.46 -2.39 -0.02 0.61 16 29 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 30 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 31 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 32 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 33 H 0.07 0.59 8.14 -2.38 -0.02 0.57 16 34 H 0.06 0.57 8.14 -2.38 -0.02 0.55 16 35 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 36 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 37 H 0.03 0.36 8.14 -2.38 -0.02 0.34 16 38 H 0.08 0.98 6.42 -2.39 -0.02 0.96 16 39 H 0.09 1.12 5.61 -2.39 -0.01 1.11 16 40 H 0.03 0.46 8.07 -2.39 -0.02 0.44 16 41 H 0.07 0.94 6.59 -2.39 -0.02 0.93 16 42 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 43 H 0.06 1.04 7.96 -2.39 -0.02 1.02 16 44 H 0.05 0.98 7.94 -2.39 -0.02 0.96 16 45 H 0.40 7.38 8.48 -92.72 -0.79 6.59 16 46 H 0.13 3.74 6.73 -2.91 -0.02 3.72 16 47 H 0.11 4.51 8.06 -2.91 -0.02 4.48 16 48 H 0.00 -0.14 8.08 -2.39 -0.02 -0.16 16 49 H 0.00 -0.11 8.08 -2.39 -0.02 -0.13 16 50 H 0.26 15.29 8.31 -92.70 -0.77 14.52 16 51 H 0.11 4.53 8.06 -2.91 -0.02 4.51 16 52 H 0.14 3.67 8.06 -2.91 -0.02 3.64 16 Total: -1.00 -67.74 403.31 1.14 -66.60 By element: Atomic # 1 Polarization: 18.00 SS G_CDS: 0.08 Total: 18.08 kcal Atomic # 6 Polarization: -49.82 SS G_CDS: 4.58 Total: -45.25 kcal Atomic # 7 Polarization: -81.54 SS G_CDS: -5.54 Total: -87.09 kcal Atomic # 14 Polarization: 45.62 SS G_CDS: 2.03 Total: 47.65 kcal Total: -67.74 1.14 -66.60 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167751677.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.466 kcal (2) G-P(sol) polarization free energy of solvation -67.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.275 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.602 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds