Wall clock time and date at job start Tue Mar 31 2020 11:25:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09003 * 109.45406 * 2 1 4 4 C 1.53041 * 109.46353 * 119.97264 * 2 1 3 5 5 C 1.53121 * 109.27699 * 60.83619 * 4 2 1 6 6 N 1.46891 * 109.52284 * 177.56303 * 5 4 2 7 7 C 1.46896 * 111.00189 * 155.00179 * 6 5 4 8 8 C 1.53001 * 109.47466 * 179.97438 * 7 6 5 9 9 C 1.50698 * 109.47554 * 179.97438 * 8 7 6 10 10 H 1.08002 * 119.99557 * 0.02562 * 9 8 7 11 11 C 1.37878 * 120.00059 * 180.02562 * 9 8 7 12 12 N 1.31520 * 119.99719 * 180.02562 * 11 9 8 13 13 Si 1.86791 * 120.00049 * 359.97438 * 11 9 8 14 14 H 1.48501 * 109.47436 * 270.00017 * 13 11 9 15 15 H 1.48499 * 109.47344 * 30.00251 * 13 11 9 16 16 H 1.48508 * 109.47176 * 150.00180 * 13 11 9 17 17 C 1.53113 * 109.15870 * 57.65577 * 5 4 2 18 18 C 1.53045 * 109.28160 * 302.34455 * 17 5 4 19 19 H 1.08993 * 109.45280 * 299.16764 * 18 17 5 20 20 C 1.52998 * 109.46347 * 179.19707 * 18 17 5 21 21 N 1.46840 * 109.51941 * 59.17903 * 18 17 5 22 22 C 1.46905 * 110.99843 * 174.16185 * 21 18 17 23 23 C 1.50700 * 109.47028 * 188.72019 * 22 21 18 24 24 C 1.38238 * 119.99779 * 263.70878 * 23 22 21 25 25 C 1.38235 * 120.00022 * 179.81462 * 24 23 22 26 26 C 1.38231 * 119.99689 * 0.39386 * 25 24 23 27 27 C 1.38233 * 120.00522 * 359.86303 * 26 25 24 28 28 C 1.38234 * 120.00219 * 83.98981 * 23 22 21 29 29 H 1.08993 * 109.47196 * 300.02579 * 1 2 3 30 30 H 1.09007 * 109.46708 * 60.02727 * 1 2 3 31 31 H 1.08996 * 109.46982 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.50124 * 300.89690 * 4 2 1 33 33 H 1.08990 * 109.50395 * 180.77841 * 4 2 1 34 34 H 1.09002 * 109.52353 * 297.69169 * 5 4 2 35 35 H 1.00905 * 110.99911 * 278.95458 * 6 5 4 36 36 H 1.09003 * 109.47484 * 60.00076 * 7 6 5 37 37 H 1.08999 * 109.47425 * 299.99704 * 7 6 5 38 38 H 1.09002 * 109.47321 * 59.99528 * 8 7 6 39 39 H 1.08999 * 109.47191 * 300.00397 * 8 7 6 40 40 H 0.96997 * 119.99532 * 179.97438 * 12 11 9 41 41 H 1.09001 * 109.50427 * 62.28520 * 17 5 4 42 42 H 1.09003 * 109.50495 * 182.40618 * 17 5 4 43 43 H 1.09006 * 109.47256 * 292.42075 * 20 18 17 44 44 H 1.09003 * 109.47189 * 52.41798 * 20 18 17 45 45 H 1.09003 * 109.47117 * 172.42608 * 20 18 17 46 46 H 1.09000 * 109.46980 * 308.72081 * 22 21 18 47 47 H 1.08995 * 109.46986 * 68.71504 * 22 21 18 48 48 H 1.08001 * 119.99734 * 0.02562 * 24 23 22 49 49 H 1.07999 * 120.00178 * 180.23236 * 25 24 23 50 50 H 1.08000 * 120.00037 * 179.83441 * 26 25 24 51 51 H 1.07999 * 120.00672 * 179.97438 * 27 26 25 52 52 H 1.08000 * 120.00181 * 359.96942 * 28 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0278 0.0000 4 6 2.0400 -0.7209 1.2500 5 6 1.5443 -2.1696 1.2356 6 7 2.0788 -2.8828 2.4032 7 6 1.2179 -4.0161 2.7673 8 6 1.8060 -4.7330 3.9843 9 6 0.9225 -5.8952 4.3583 10 1 0.0309 -6.1020 3.7849 11 6 1.2524 -6.6944 5.4323 12 7 0.4816 -7.7089 5.7583 13 14 2.7949 -6.3370 6.4234 14 1 3.9418 -7.0769 5.8383 15 1 3.0776 -4.8795 6.3908 16 1 2.5915 -6.7705 7.8291 17 6 2.0270 -2.8531 -0.0466 18 6 1.5175 -2.0704 -1.2591 19 1 0.4276 -2.0608 -1.2531 20 6 2.0142 -2.7386 -2.5427 21 7 2.0193 -0.6918 -1.1993 22 6 1.6652 0.0506 -2.4165 23 6 2.3725 1.3814 -2.4169 24 6 1.7182 2.5119 -1.9644 25 6 2.3682 3.7319 -1.9611 26 6 3.6696 3.8228 -2.4181 27 6 4.3221 2.6933 -2.8756 28 6 3.6734 1.4726 -2.8753 29 1 -0.3633 0.5142 0.8897 30 1 -0.3633 0.5135 -0.8903 31 1 -0.3633 -1.0276 0.0005 32 1 1.6638 -0.2164 2.1399 33 1 3.1298 -0.7092 1.2576 34 1 0.4549 -2.1822 1.2683 35 1 3.0266 -3.1872 2.2384 36 1 1.1589 -4.7114 1.9300 37 1 0.2193 -3.6512 3.0077 38 1 1.8654 -4.0380 4.8219 39 1 2.8045 -5.0979 3.7436 40 1 0.7139 -8.2713 6.5136 41 1 3.1167 -2.8750 -0.0594 42 1 1.6415 -3.8720 -0.0832 43 1 3.0965 -2.6299 -2.6136 44 1 1.7559 -3.7975 -2.5245 45 1 1.5442 -2.2646 -3.4044 46 1 1.9686 -0.5224 -3.2928 47 1 0.5876 0.2118 -2.4432 48 1 0.7004 2.4413 -1.6102 49 1 1.8584 4.6145 -1.6041 50 1 4.1766 4.7764 -2.4181 51 1 5.3388 2.7643 -3.2330 52 1 4.1832 0.5901 -3.2326 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001168021537.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:25:02 Heat of formation + Delta-G solvation = 19.240838 kcal Electronic energy + Delta-G solvation = -26914.672109 eV Core-core repulsion = 23492.138491 eV Total energy + Delta-G solvation = -3422.533618 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.52304 -39.05020 -36.29167 -33.65157 -33.38565 -32.46882 -31.11737 -30.85656 -29.04582 -27.78909 -26.66098 -25.70823 -23.87592 -22.85607 -22.33735 -21.41873 -20.73912 -20.36735 -18.60785 -16.98862 -16.75998 -16.25123 -16.00843 -15.61479 -15.26764 -14.76388 -14.72754 -14.26470 -14.01778 -13.89216 -13.66285 -13.46914 -13.19973 -12.91516 -12.71964 -12.61613 -12.50803 -12.39780 -12.31905 -12.05952 -11.84032 -11.63881 -11.41978 -11.24712 -11.21583 -11.00675 -10.86767 -10.83111 -10.54423 -10.26240 -10.02836 -9.83468 -9.57248 -9.20677 -9.12826 -8.98792 -8.51836 -8.35604 -7.82955 -6.02812 -4.00942 1.10064 1.18398 3.33766 3.41179 3.43967 3.47739 3.91316 4.48192 4.50066 4.51665 4.58787 4.75217 4.77282 4.80695 4.87388 4.92847 5.06018 5.11381 5.17205 5.23287 5.28962 5.31887 5.35837 5.38178 5.43094 5.50419 5.57786 5.65282 5.70416 5.76516 5.81600 5.82022 5.87510 5.98693 6.03194 6.06890 6.11780 6.22448 6.24192 6.24960 6.28464 6.38756 6.41687 6.46771 6.76531 6.80324 6.99234 7.05628 7.18822 7.41495 7.66894 7.80043 7.95987 8.55078 9.01271 9.59829 11.10544 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.023803 B = 0.002446 C = 0.002383 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1176.021550 B =11445.995830 C =11748.461764 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.081 3.919 3 H 0.085 0.915 4 C -0.096 4.096 5 C 0.086 3.914 6 N -0.689 5.689 7 C 0.075 3.925 8 C -0.010 4.010 9 C -0.520 4.520 10 H 0.070 0.930 11 C 0.066 3.934 12 N -0.905 5.905 13 Si 0.882 3.118 14 H -0.278 1.278 15 H -0.263 1.263 16 H -0.289 1.289 17 C -0.139 4.139 18 C 0.083 3.917 19 H 0.045 0.955 20 C -0.149 4.149 21 N -0.519 5.519 22 C 0.084 3.916 23 C -0.073 4.073 24 C -0.115 4.115 25 C -0.122 4.122 26 C -0.123 4.123 27 C -0.122 4.122 28 C -0.097 4.097 29 H 0.063 0.937 30 H 0.051 0.949 31 H 0.063 0.937 32 H 0.071 0.929 33 H 0.068 0.932 34 H 0.073 0.927 35 H 0.335 0.665 36 H 0.021 0.979 37 H 0.062 0.938 38 H 0.025 0.975 39 H 0.008 0.992 40 H 0.263 0.737 41 H 0.071 0.929 42 H 0.067 0.933 43 H 0.064 0.936 44 H 0.061 0.939 45 H 0.052 0.948 46 H 0.087 0.913 47 H 0.044 0.956 48 H 0.118 0.882 49 H 0.119 0.881 50 H 0.118 0.882 51 H 0.120 0.880 52 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.544 22.091 -20.801 30.681 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.249 4.249 2 C -0.028 4.028 3 H 0.103 0.897 4 C -0.135 4.135 5 C -0.025 4.025 6 N -0.318 5.318 7 C -0.053 4.053 8 C -0.048 4.048 9 C -0.559 4.559 10 H 0.088 0.912 11 C -0.135 4.135 12 N -0.544 5.544 13 Si 0.709 3.291 14 H -0.204 1.204 15 H -0.187 1.187 16 H -0.215 1.215 17 C -0.179 4.179 18 C -0.026 4.026 19 H 0.063 0.937 20 C -0.206 4.206 21 N -0.243 5.243 22 C -0.043 4.043 23 C -0.073 4.073 24 C -0.134 4.134 25 C -0.140 4.140 26 C -0.142 4.142 27 C -0.140 4.140 28 C -0.116 4.116 29 H 0.082 0.918 30 H 0.070 0.930 31 H 0.082 0.918 32 H 0.090 0.910 33 H 0.087 0.913 34 H 0.091 0.909 35 H 0.153 0.847 36 H 0.039 0.961 37 H 0.080 0.920 38 H 0.043 0.957 39 H 0.027 0.973 40 H 0.072 0.928 41 H 0.090 0.910 42 H 0.085 0.915 43 H 0.083 0.917 44 H 0.080 0.920 45 H 0.071 0.929 46 H 0.105 0.895 47 H 0.062 0.938 48 H 0.136 0.864 49 H 0.137 0.863 50 H 0.136 0.864 51 H 0.138 0.862 52 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 4.733 22.313 -20.158 30.441 hybrid contribution 0.049 -0.570 -0.152 0.592 sum 4.782 21.744 -20.310 30.135 Atomic orbital electron populations 1.22528 0.97894 1.02556 1.01913 1.21731 0.92507 0.98398 0.90162 0.89713 1.21550 1.01368 0.94790 0.95761 1.21633 0.99159 0.93598 0.88085 1.60685 1.06030 1.29279 1.35817 1.21957 0.96229 0.89431 0.97727 1.19546 0.96011 0.95553 0.93672 1.21076 1.10002 1.10725 1.14067 0.91191 1.25017 0.96746 0.94718 0.97027 1.69921 1.38310 1.17634 1.28501 0.86741 0.83628 0.79434 0.79294 1.20414 1.18728 1.21467 1.22383 1.01895 0.98921 0.94653 1.21576 0.97241 0.88014 0.95733 0.93693 1.21943 1.02137 1.00348 0.96205 1.62230 1.59475 1.01355 1.01230 1.21161 0.97260 0.91655 0.94243 1.19760 0.94701 0.94432 0.98421 1.21091 0.99926 0.92524 0.99826 1.21107 0.95171 0.97559 1.00166 1.21134 0.95112 0.98518 0.99411 1.21158 0.99849 0.92883 1.00143 1.21013 0.94090 0.97466 0.99002 0.91793 0.92963 0.91824 0.91049 0.91341 0.90897 0.84700 0.96121 0.91984 0.95718 0.97344 0.92763 0.91046 0.91458 0.91683 0.92004 0.92867 0.89522 0.93834 0.86418 0.86281 0.86369 0.86241 0.86041 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.87 8.19 37.16 0.30 -1.57 16 2 C 0.08 0.85 2.67 -67.72 -0.18 0.67 16 3 H 0.08 0.91 6.08 -51.93 -0.32 0.60 16 4 C -0.10 -1.19 5.22 -26.65 -0.14 -1.33 16 5 C 0.09 1.18 2.23 -67.60 -0.15 1.03 16 6 N -0.69 -11.62 6.25 -106.60 -0.67 -12.28 16 7 C 0.07 1.52 5.42 -3.83 -0.02 1.50 16 8 C -0.01 -0.24 4.30 -27.88 -0.12 -0.36 16 9 C -0.52 -15.05 9.66 -34.44 -0.33 -15.38 16 10 H 0.07 2.17 7.99 -52.49 -0.42 1.75 16 11 C 0.07 1.95 5.47 -17.82 -0.10 1.86 16 12 N -0.90 -28.22 13.96 55.43 0.77 -27.45 16 13 Si 0.88 22.14 27.47 -169.99 -4.67 17.47 16 14 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 15 H -0.26 -6.41 6.54 56.52 0.37 -6.04 16 16 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 17 C -0.14 -1.72 4.62 -26.65 -0.12 -1.85 16 18 C 0.08 0.87 2.15 -67.72 -0.15 0.72 16 19 H 0.05 0.49 6.19 -51.93 -0.32 0.17 16 20 C -0.15 -1.35 8.52 37.16 0.32 -1.03 16 21 N -0.52 -5.23 4.44 -220.18 -0.98 -6.21 16 22 C 0.08 0.74 4.62 -4.97 -0.02 0.71 16 23 C -0.07 -0.66 4.65 -104.62 -0.49 -1.14 16 24 C -0.12 -0.99 8.27 -39.58 -0.33 -1.32 16 25 C -0.12 -0.98 10.05 -39.58 -0.40 -1.38 16 26 C -0.12 -0.97 10.05 -39.59 -0.40 -1.37 16 27 C -0.12 -0.99 10.05 -39.58 -0.40 -1.39 16 28 C -0.10 -0.86 9.73 -39.58 -0.38 -1.24 16 29 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.05 0.46 6.14 -51.92 -0.32 0.14 16 31 H 0.06 0.69 4.80 -51.93 -0.25 0.44 16 32 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 33 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 34 H 0.07 1.07 6.22 -51.93 -0.32 0.74 16 35 H 0.34 5.46 8.45 -39.29 -0.33 5.12 16 36 H 0.02 0.42 7.51 -51.93 -0.39 0.03 16 37 H 0.06 1.30 8.06 -51.93 -0.42 0.88 16 38 H 0.02 0.62 7.20 -51.93 -0.37 0.24 16 39 H 0.01 0.20 7.57 -51.93 -0.39 -0.19 16 40 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 41 H 0.07 0.91 8.10 -51.93 -0.42 0.49 16 42 H 0.07 0.90 7.54 -51.93 -0.39 0.51 16 43 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 44 H 0.06 0.56 8.13 -51.93 -0.42 0.14 16 45 H 0.05 0.42 6.60 -51.93 -0.34 0.08 16 46 H 0.09 0.71 5.87 -51.93 -0.30 0.40 16 47 H 0.04 0.38 6.17 -51.93 -0.32 0.06 16 48 H 0.12 0.91 7.74 -52.49 -0.41 0.50 16 49 H 0.12 0.74 8.06 -52.49 -0.42 0.32 16 50 H 0.12 0.70 8.06 -52.49 -0.42 0.28 16 51 H 0.12 0.75 8.06 -52.49 -0.42 0.33 16 52 H 0.12 0.98 8.06 -52.49 -0.42 0.55 16 LS Contribution 388.19 15.07 5.85 5.85 Total: -1.00 -30.70 388.19 -11.81 -42.51 By element: Atomic # 1 Polarization: 12.00 SS G_CDS: -9.01 Total: 2.98 kcal Atomic # 6 Polarization: -19.77 SS G_CDS: -3.10 Total: -22.87 kcal Atomic # 7 Polarization: -45.07 SS G_CDS: -0.87 Total: -45.94 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -4.67 Total: 17.47 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -30.70 -11.81 -42.51 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168021537.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.747 kcal (2) G-P(sol) polarization free energy of solvation -30.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.506 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds