Wall clock time and date at job start Tue Mar 31 2020 11:25:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09003 * 109.45406 * 2 1 4 4 C 1.53041 * 109.46353 * 119.97264 * 2 1 3 5 5 C 1.53121 * 109.27699 * 60.83619 * 4 2 1 6 6 N 1.46891 * 109.52284 * 177.56303 * 5 4 2 7 7 C 1.46896 * 111.00189 * 155.00179 * 6 5 4 8 8 C 1.53001 * 109.47466 * 179.97438 * 7 6 5 9 9 C 1.50698 * 109.47554 * 179.97438 * 8 7 6 10 10 H 1.08002 * 119.99557 * 0.02562 * 9 8 7 11 11 C 1.37878 * 120.00059 * 180.02562 * 9 8 7 12 12 N 1.31520 * 119.99719 * 180.02562 * 11 9 8 13 13 Si 1.86791 * 120.00049 * 359.97438 * 11 9 8 14 14 H 1.48501 * 109.47436 * 270.00017 * 13 11 9 15 15 H 1.48499 * 109.47344 * 30.00251 * 13 11 9 16 16 H 1.48508 * 109.47176 * 150.00180 * 13 11 9 17 17 C 1.53113 * 109.15870 * 57.65577 * 5 4 2 18 18 C 1.53045 * 109.28160 * 302.34455 * 17 5 4 19 19 H 1.08993 * 109.45280 * 299.16764 * 18 17 5 20 20 C 1.52998 * 109.46347 * 179.19707 * 18 17 5 21 21 N 1.46840 * 109.51941 * 59.17903 * 18 17 5 22 22 C 1.46905 * 110.99843 * 174.16185 * 21 18 17 23 23 C 1.50700 * 109.47028 * 188.72019 * 22 21 18 24 24 C 1.38238 * 119.99779 * 263.70878 * 23 22 21 25 25 C 1.38235 * 120.00022 * 179.81462 * 24 23 22 26 26 C 1.38231 * 119.99689 * 0.39386 * 25 24 23 27 27 C 1.38233 * 120.00522 * 359.86303 * 26 25 24 28 28 C 1.38234 * 120.00219 * 83.98981 * 23 22 21 29 29 H 1.08993 * 109.47196 * 300.02579 * 1 2 3 30 30 H 1.09007 * 109.46708 * 60.02727 * 1 2 3 31 31 H 1.08996 * 109.46982 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.50124 * 300.89690 * 4 2 1 33 33 H 1.08990 * 109.50395 * 180.77841 * 4 2 1 34 34 H 1.09002 * 109.52353 * 297.69169 * 5 4 2 35 35 H 1.00905 * 110.99911 * 278.95458 * 6 5 4 36 36 H 1.09003 * 109.47484 * 60.00076 * 7 6 5 37 37 H 1.08999 * 109.47425 * 299.99704 * 7 6 5 38 38 H 1.09002 * 109.47321 * 59.99528 * 8 7 6 39 39 H 1.08999 * 109.47191 * 300.00397 * 8 7 6 40 40 H 0.96997 * 119.99532 * 179.97438 * 12 11 9 41 41 H 1.09001 * 109.50427 * 62.28520 * 17 5 4 42 42 H 1.09003 * 109.50495 * 182.40618 * 17 5 4 43 43 H 1.09006 * 109.47256 * 292.42075 * 20 18 17 44 44 H 1.09003 * 109.47189 * 52.41798 * 20 18 17 45 45 H 1.09003 * 109.47117 * 172.42608 * 20 18 17 46 46 H 1.09000 * 109.46980 * 308.72081 * 22 21 18 47 47 H 1.08995 * 109.46986 * 68.71504 * 22 21 18 48 48 H 1.08001 * 119.99734 * 0.02562 * 24 23 22 49 49 H 1.07999 * 120.00178 * 180.23236 * 25 24 23 50 50 H 1.08000 * 120.00037 * 179.83441 * 26 25 24 51 51 H 1.07999 * 120.00672 * 179.97438 * 27 26 25 52 52 H 1.08000 * 120.00181 * 359.96942 * 28 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0278 0.0000 4 6 2.0400 -0.7209 1.2500 5 6 1.5443 -2.1696 1.2356 6 7 2.0788 -2.8828 2.4032 7 6 1.2179 -4.0161 2.7673 8 6 1.8060 -4.7330 3.9843 9 6 0.9225 -5.8952 4.3583 10 1 0.0309 -6.1020 3.7849 11 6 1.2524 -6.6944 5.4323 12 7 0.4816 -7.7089 5.7583 13 14 2.7949 -6.3370 6.4234 14 1 3.9418 -7.0769 5.8383 15 1 3.0776 -4.8795 6.3908 16 1 2.5915 -6.7705 7.8291 17 6 2.0270 -2.8531 -0.0466 18 6 1.5175 -2.0704 -1.2591 19 1 0.4276 -2.0608 -1.2531 20 6 2.0142 -2.7386 -2.5427 21 7 2.0193 -0.6918 -1.1993 22 6 1.6652 0.0506 -2.4165 23 6 2.3725 1.3814 -2.4169 24 6 1.7182 2.5119 -1.9644 25 6 2.3682 3.7319 -1.9611 26 6 3.6696 3.8228 -2.4181 27 6 4.3221 2.6933 -2.8756 28 6 3.6734 1.4726 -2.8753 29 1 -0.3633 0.5142 0.8897 30 1 -0.3633 0.5135 -0.8903 31 1 -0.3633 -1.0276 0.0005 32 1 1.6638 -0.2164 2.1399 33 1 3.1298 -0.7092 1.2576 34 1 0.4549 -2.1822 1.2683 35 1 3.0266 -3.1872 2.2384 36 1 1.1589 -4.7114 1.9300 37 1 0.2193 -3.6512 3.0077 38 1 1.8654 -4.0380 4.8219 39 1 2.8045 -5.0979 3.7436 40 1 0.7139 -8.2713 6.5136 41 1 3.1167 -2.8750 -0.0594 42 1 1.6415 -3.8720 -0.0832 43 1 3.0965 -2.6299 -2.6136 44 1 1.7559 -3.7975 -2.5245 45 1 1.5442 -2.2646 -3.4044 46 1 1.9686 -0.5224 -3.2928 47 1 0.5876 0.2118 -2.4432 48 1 0.7004 2.4413 -1.6102 49 1 1.8584 4.6145 -1.6041 50 1 4.1766 4.7764 -2.4181 51 1 5.3388 2.7643 -3.2330 52 1 4.1832 0.5901 -3.2326 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001168021537.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:25:01 Heat of formation + Delta-G solvation = 1.213721 kcal Electronic energy + Delta-G solvation = -26915.453824 eV Core-core repulsion = 23492.138491 eV Total energy + Delta-G solvation = -3423.315333 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.35907 -39.75734 -37.58025 -35.32120 -34.25279 -33.92193 -32.21148 -31.68970 -30.28068 -28.85455 -27.56526 -26.65061 -25.52406 -23.55714 -23.21067 -22.34619 -22.18327 -21.55597 -19.54530 -18.95757 -17.58505 -17.23268 -16.82058 -16.42000 -16.34108 -16.14929 -15.81557 -15.60892 -15.16731 -14.92960 -14.77291 -14.56734 -14.36738 -14.10577 -13.76680 -13.51985 -13.49875 -13.41254 -13.26740 -13.09592 -12.97439 -12.84352 -12.60791 -12.53560 -12.09945 -12.02113 -11.88275 -11.85332 -11.75062 -11.73906 -11.53751 -11.45217 -11.35708 -10.96123 -10.77262 -9.73545 -9.61562 -9.25503 -9.11155 -8.30667 -6.35149 0.48950 0.58134 1.36178 1.38733 1.52070 2.36439 2.75719 3.04863 3.18587 3.26421 3.77426 3.78470 3.91808 4.00360 4.05391 4.14040 4.22609 4.27228 4.33099 4.40303 4.44240 4.48032 4.49969 4.51558 4.54636 4.58774 4.62919 4.70789 4.81218 4.84067 4.90076 4.91790 4.97612 5.01917 5.09542 5.11555 5.14835 5.18941 5.23736 5.28312 5.30532 5.34365 5.45476 5.51016 5.63508 5.63802 5.69864 5.77914 6.15088 6.19082 6.21707 6.24096 6.26179 6.55879 6.73644 7.29746 8.85986 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.023803 B = 0.002446 C = 0.002383 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1176.021550 B =11445.995830 C =11748.461764 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.088 3.912 3 H 0.087 0.913 4 C -0.089 4.089 5 C 0.088 3.912 6 N -0.689 5.689 7 C 0.091 3.909 8 C -0.004 4.004 9 C -0.533 4.533 10 H 0.031 0.969 11 C 0.004 3.996 12 N -0.951 5.951 13 Si 0.955 3.045 14 H -0.266 1.266 15 H -0.248 1.248 16 H -0.284 1.284 17 C -0.133 4.133 18 C 0.087 3.913 19 H 0.042 0.958 20 C -0.144 4.144 21 N -0.521 5.521 22 C 0.088 3.912 23 C -0.084 4.084 24 C -0.124 4.124 25 C -0.130 4.130 26 C -0.130 4.130 27 C -0.131 4.131 28 C -0.110 4.110 29 H 0.064 0.936 30 H 0.065 0.935 31 H 0.051 0.949 32 H 0.066 0.934 33 H 0.063 0.937 34 H 0.064 0.936 35 H 0.341 0.659 36 H 0.016 0.984 37 H 0.051 0.949 38 H 0.021 0.979 39 H 0.018 0.982 40 H 0.267 0.733 41 H 0.070 0.930 42 H 0.054 0.946 43 H 0.064 0.936 44 H 0.060 0.940 45 H 0.067 0.933 46 H 0.094 0.906 47 H 0.047 0.953 48 H 0.124 0.876 49 H 0.135 0.865 50 H 0.136 0.864 51 H 0.135 0.865 52 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.187 24.092 -21.624 32.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C -0.021 4.021 3 H 0.105 0.895 4 C -0.128 4.128 5 C -0.022 4.022 6 N -0.319 5.319 7 C -0.038 4.038 8 C -0.042 4.042 9 C -0.572 4.572 10 H 0.049 0.951 11 C -0.193 4.193 12 N -0.591 5.591 13 Si 0.778 3.222 14 H -0.191 1.191 15 H -0.172 1.172 16 H -0.209 1.209 17 C -0.172 4.172 18 C -0.022 4.022 19 H 0.060 0.940 20 C -0.201 4.201 21 N -0.246 5.246 22 C -0.039 4.039 23 C -0.084 4.084 24 C -0.143 4.143 25 C -0.148 4.148 26 C -0.148 4.148 27 C -0.149 4.149 28 C -0.128 4.128 29 H 0.083 0.917 30 H 0.083 0.917 31 H 0.070 0.930 32 H 0.084 0.916 33 H 0.082 0.918 34 H 0.082 0.918 35 H 0.159 0.841 36 H 0.034 0.966 37 H 0.069 0.931 38 H 0.040 0.960 39 H 0.036 0.964 40 H 0.076 0.924 41 H 0.088 0.912 42 H 0.073 0.927 43 H 0.083 0.917 44 H 0.079 0.921 45 H 0.086 0.914 46 H 0.112 0.888 47 H 0.065 0.935 48 H 0.142 0.858 49 H 0.153 0.847 50 H 0.154 0.846 51 H 0.153 0.847 52 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 6.377 24.334 -21.009 32.775 hybrid contribution -0.528 -1.169 0.048 1.284 sum 5.848 23.165 -20.961 31.783 Atomic orbital electron populations 1.22476 0.97332 1.01991 1.02635 1.21615 0.92828 0.98123 0.89518 0.89463 1.21469 1.00943 0.93653 0.96707 1.21664 0.98617 0.94295 0.87633 1.60610 1.05846 1.27586 1.37831 1.21597 0.96004 0.90171 0.96069 1.19431 0.95580 0.94036 0.95105 1.21404 1.09535 1.12411 1.13821 0.95067 1.26015 1.00537 0.94352 0.98350 1.70069 1.40615 1.18965 1.29464 0.85591 0.79083 0.80091 0.77464 1.19051 1.17193 1.20935 1.22276 1.01664 0.98405 0.94870 1.21508 0.96989 0.88245 0.95467 0.94023 1.21898 1.02150 1.00240 0.95861 1.62204 1.59529 1.01177 1.01660 1.21164 0.97460 0.91635 0.93650 1.19824 0.94972 0.94557 0.99056 1.21244 1.00343 0.92730 0.99968 1.21379 0.95455 0.98006 0.99955 1.21431 0.95219 0.99302 0.98881 1.21417 1.00665 0.92777 0.99998 1.21174 0.94260 0.98041 0.99352 0.91702 0.91660 0.92966 0.91580 0.91838 0.91784 0.84076 0.96569 0.93089 0.96042 0.96403 0.92438 0.91155 0.92701 0.91727 0.92147 0.91381 0.88783 0.93506 0.85818 0.84719 0.84579 0.84742 0.85674 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.41 8.19 71.98 0.59 -2.82 16 2 C 0.09 1.72 2.67 44.94 0.12 1.84 16 3 H 0.09 1.73 6.08 -2.39 -0.01 1.71 16 4 C -0.09 -2.11 5.22 30.65 0.16 -1.95 16 5 C 0.09 2.37 2.23 45.00 0.10 2.47 16 6 N -0.69 -22.77 6.25 -491.19 -3.07 -25.85 16 7 C 0.09 3.70 5.42 86.30 0.47 4.16 16 8 C 0.00 -0.18 4.30 29.85 0.13 -0.05 16 9 C -0.53 -31.52 9.66 25.60 0.25 -31.27 16 10 H 0.03 2.02 7.99 -2.91 -0.02 1.99 16 11 C 0.00 0.26 5.47 84.65 0.46 0.72 16 12 N -0.95 -60.51 13.96 21.45 0.30 -60.21 16 13 Si 0.95 45.32 27.47 68.60 1.88 47.20 16 14 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 15 H -0.25 -11.13 6.54 99.48 0.65 -10.48 16 16 H -0.28 -13.16 7.11 99.48 0.71 -12.46 16 17 C -0.13 -3.21 4.62 30.65 0.14 -3.06 16 18 C 0.09 1.71 2.15 44.94 0.10 1.81 16 19 H 0.04 0.87 6.19 -2.39 -0.01 0.85 16 20 C -0.14 -2.38 8.52 71.98 0.61 -1.77 16 21 N -0.52 -9.71 4.44 -850.52 -3.78 -13.49 16 22 C 0.09 1.38 4.62 85.56 0.40 1.78 16 23 C -0.08 -1.37 4.65 -19.87 -0.09 -1.46 16 24 C -0.12 -1.92 8.27 22.27 0.18 -1.74 16 25 C -0.13 -1.84 10.05 22.27 0.22 -1.61 16 26 C -0.13 -1.78 10.05 22.27 0.22 -1.56 16 27 C -0.13 -1.89 10.05 22.27 0.22 -1.66 16 28 C -0.11 -1.77 9.73 22.27 0.22 -1.55 16 29 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 30 H 0.06 1.03 6.14 -2.38 -0.01 1.01 16 31 H 0.05 1.09 4.80 -2.39 -0.01 1.08 16 32 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 33 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 34 H 0.06 1.87 6.22 -2.39 -0.01 1.85 16 35 H 0.34 10.69 8.45 -89.69 -0.76 9.93 16 36 H 0.02 0.67 7.51 -2.39 -0.02 0.65 16 37 H 0.05 2.17 8.06 -2.39 -0.02 2.15 16 38 H 0.02 1.05 7.20 -2.39 -0.02 1.03 16 39 H 0.02 0.82 7.57 -2.39 -0.02 0.81 16 40 H 0.27 15.79 8.31 -92.71 -0.77 15.02 16 41 H 0.07 1.72 8.10 -2.39 -0.02 1.70 16 42 H 0.05 1.46 7.54 -2.39 -0.02 1.44 16 43 H 0.06 1.08 8.14 -2.38 -0.02 1.06 16 44 H 0.06 1.02 8.13 -2.39 -0.02 1.00 16 45 H 0.07 0.93 6.60 -2.39 -0.02 0.91 16 46 H 0.09 1.34 5.87 -2.39 -0.01 1.32 16 47 H 0.05 0.71 6.17 -2.39 -0.01 0.70 16 48 H 0.12 1.68 7.74 -2.91 -0.02 1.65 16 49 H 0.13 1.39 8.06 -2.91 -0.02 1.36 16 50 H 0.14 1.29 8.06 -2.91 -0.02 1.26 16 51 H 0.13 1.43 8.06 -2.91 -0.02 1.41 16 52 H 0.13 1.83 8.06 -2.91 -0.02 1.80 16 Total: -1.00 -66.18 388.19 -0.09 -66.27 By element: Atomic # 1 Polarization: 23.73 SS G_CDS: 0.08 Total: 23.80 kcal Atomic # 6 Polarization: -42.23 SS G_CDS: 4.50 Total: -37.73 kcal Atomic # 7 Polarization: -93.00 SS G_CDS: -6.55 Total: -99.55 kcal Atomic # 14 Polarization: 45.32 SS G_CDS: 1.88 Total: 47.20 kcal Total: -66.18 -0.09 -66.27 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168021537.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.479 kcal (2) G-P(sol) polarization free energy of solvation -66.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.266 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds