Wall clock time and date at job start Tue Mar 31 2020 11:25:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 109.47588 * 2 1 4 4 C 1.50696 * 109.47308 * 120.00487 * 2 1 3 5 5 H 1.08007 * 120.00015 * 119.99303 * 4 2 1 6 6 C 1.37877 * 119.99972 * 299.99555 * 4 2 1 7 7 N 1.31511 * 119.99887 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99845 * 179.97438 * 6 4 2 9 9 H 1.48498 * 109.47008 * 60.00563 * 8 6 4 10 10 H 1.48504 * 109.47005 * 180.02562 * 8 6 4 11 11 H 1.48492 * 109.47277 * 300.00134 * 8 6 4 12 12 N 1.46906 * 109.46989 * 240.00451 * 2 1 3 13 13 C 1.46901 * 111.00223 * 84.99922 * 12 2 1 14 14 C 1.53110 * 109.57364 * 85.15812 * 13 12 2 15 15 C 1.53037 * 109.27951 * 177.59175 * 14 13 12 16 16 H 1.09005 * 109.45357 * 60.83376 * 15 14 13 17 17 C 1.53004 * 109.46570 * 180.80773 * 15 14 13 18 18 N 1.46848 * 109.52212 * 300.82369 * 15 14 13 19 19 C 1.46904 * 111.00009 * 185.83529 * 18 15 14 20 20 C 1.50700 * 109.47298 * 170.68949 * 19 18 15 21 21 C 1.38232 * 120.00211 * 275.76248 * 20 19 18 22 22 C 1.38237 * 120.00329 * 179.78657 * 21 20 19 23 23 C 1.38237 * 119.99478 * 0.46183 * 22 21 20 24 24 C 1.38235 * 119.99966 * 359.76776 * 23 22 21 25 25 C 1.38233 * 120.00328 * 0.02562 * 24 23 22 26 26 C 1.46846 * 111.19788 * 61.73991 * 18 15 14 27 27 H 1.08999 * 109.45403 * 178.24266 * 26 18 15 28 28 C 1.53005 * 109.46360 * 58.27474 * 26 18 15 29 29 C 1.53030 * 109.52500 * 298.25595 * 26 18 15 30 30 H 1.09004 * 109.46800 * 299.99765 * 1 2 3 31 31 H 1.09004 * 109.47436 * 59.99432 * 1 2 3 32 32 H 1.08990 * 109.47440 * 179.97438 * 1 2 3 33 33 H 0.97005 * 120.00058 * 179.97438 * 7 6 4 34 34 H 1.00903 * 110.99489 * 321.04741 * 12 2 1 35 35 H 1.09005 * 109.51773 * 325.00303 * 13 12 2 36 36 H 1.09000 * 109.50922 * 297.53411 * 14 13 12 37 37 H 1.09006 * 109.50465 * 57.65364 * 14 13 12 38 38 H 1.09003 * 109.47009 * 186.24389 * 17 15 14 39 39 H 1.09000 * 109.46690 * 306.24755 * 17 15 14 40 40 H 1.08997 * 109.47006 * 66.23879 * 17 15 14 41 41 H 1.08999 * 109.47502 * 290.69541 * 19 18 15 42 42 H 1.09005 * 109.46732 * 50.69581 * 19 18 15 43 43 H 1.08009 * 119.99997 * 359.97438 * 21 20 19 44 44 H 1.07995 * 120.00335 * 180.25102 * 22 21 20 45 45 H 1.08000 * 120.00012 * 179.79063 * 23 22 21 46 46 H 1.08006 * 120.00096 * 179.97438 * 24 23 22 47 47 H 1.07995 * 120.00142 * 179.97438 * 25 24 23 48 48 H 1.09001 * 109.46697 * 299.94851 * 28 26 18 49 49 H 1.09001 * 109.47019 * 59.94407 * 28 26 18 50 50 H 1.08994 * 109.47488 * 179.97438 * 28 26 18 51 51 H 1.08999 * 109.50628 * 299.24169 * 29 26 18 52 52 H 1.08999 * 109.53653 * 179.14001 * 29 26 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 1.2304 5 1 2.6532 -1.5887 1.1312 6 6 1.6994 -0.2395 2.4827 7 7 0.9429 0.8295 2.6034 8 14 2.3215 -1.1206 4.0078 9 1 3.8065 -1.1212 4.0079 10 1 1.8262 -0.4209 5.2204 11 1 1.8260 -2.5204 4.0075 12 7 2.0196 -0.6924 -1.1995 13 6 2.0824 0.2227 -2.3470 14 6 3.4130 0.9800 -2.3269 15 6 3.4970 1.8866 -3.5570 16 1 2.6800 2.6078 -3.5329 17 6 4.8340 2.6305 -3.5517 18 7 3.3950 1.0722 -4.7747 19 6 3.6101 1.8910 -5.9752 20 6 3.7260 0.9943 -7.1808 21 6 4.9414 0.4180 -7.4994 22 6 5.0466 -0.4081 -8.6028 23 6 3.9386 -0.6502 -9.3930 24 6 2.7243 -0.0701 -9.0771 25 6 2.6180 0.7525 -7.9713 26 6 2.1056 0.3725 -4.8391 27 1 2.0476 -0.1972 -5.7665 28 6 0.9681 1.3949 -4.7970 29 6 1.9800 -0.5793 -3.6473 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3634 -1.0276 -0.0005 33 1 0.7083 1.1607 3.4845 34 1 1.4494 -1.4978 -1.4101 35 1 1.2578 0.9335 -2.2914 36 1 3.4731 1.5864 -1.4232 37 1 4.2376 0.2673 -2.3431 38 1 4.8489 3.3567 -4.3644 39 1 4.9584 3.1473 -2.6001 40 1 5.6471 1.9173 -3.6867 41 1 2.7681 2.5705 -6.1073 42 1 4.5281 2.4677 -5.8619 43 1 5.8081 0.6107 -6.8845 44 1 5.9953 -0.8616 -8.8493 45 1 4.0215 -1.2929 -10.2570 46 1 1.8586 -0.2590 -9.6948 47 1 1.6694 1.2061 -7.7248 48 1 1.0257 1.9645 -3.8694 49 1 1.0573 2.0729 -5.6458 50 1 0.0109 0.8758 -4.8452 51 1 2.7821 -1.3165 -3.6843 52 1 1.0166 -1.0875 -3.6866 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001168024201.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:25:15 Heat of formation + Delta-G solvation = 25.218502 kcal Electronic energy + Delta-G solvation = -27564.330973 eV Core-core repulsion = 24142.056566 eV Total energy + Delta-G solvation = -3422.274407 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.28824 -38.86526 -36.10792 -33.58443 -33.13085 -32.04047 -30.99250 -30.26177 -28.38064 -26.90072 -26.39903 -25.30817 -25.03086 -22.73840 -22.22888 -21.28508 -20.63122 -19.78313 -18.35407 -16.86459 -16.35577 -15.86381 -15.67998 -15.49952 -14.95987 -14.83700 -14.55923 -14.04903 -13.75154 -13.55053 -13.50384 -13.07827 -12.88606 -12.62232 -12.54910 -12.36209 -12.28228 -11.94933 -11.83956 -11.58841 -11.50591 -11.30771 -11.12128 -11.06592 -10.95010 -10.89996 -10.75143 -10.57813 -10.29537 -10.18836 -10.05753 -9.92545 -9.49258 -9.01595 -8.91518 -8.85870 -8.31693 -8.12075 -7.14529 -5.94435 -3.97184 1.21997 1.29617 3.37013 3.40552 3.44378 3.58288 4.11109 4.47125 4.65517 4.72087 4.87486 4.92359 4.96719 5.01738 5.08027 5.21479 5.28692 5.35407 5.37013 5.37682 5.45958 5.51776 5.54985 5.60495 5.71464 5.75968 5.86960 5.88507 5.93925 5.95257 6.00542 6.06694 6.23247 6.26885 6.32415 6.35367 6.38817 6.42506 6.46167 6.54709 6.67249 6.73008 6.86702 6.88287 6.93838 7.15689 7.25176 7.30425 7.45123 7.78213 7.94881 8.34466 8.62313 8.70179 9.10382 9.68088 11.12575 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.024132 B = 0.002822 C = 0.002776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1160.009421 B = 9920.548165 C =10085.300442 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.213 3.787 3 H 0.033 0.967 4 C -0.493 4.493 5 H 0.061 0.939 6 C 0.055 3.945 7 N -0.899 5.899 8 Si 0.896 3.104 9 H -0.277 1.277 10 H -0.290 1.290 11 H -0.279 1.279 12 N -0.680 5.680 13 C 0.089 3.911 14 C -0.093 4.093 15 C 0.079 3.921 16 H 0.042 0.958 17 C -0.147 4.147 18 N -0.517 5.517 19 C 0.082 3.918 20 C -0.070 4.070 21 C -0.097 4.097 22 C -0.122 4.122 23 C -0.125 4.125 24 C -0.123 4.123 25 C -0.116 4.116 26 C 0.085 3.915 27 H 0.081 0.919 28 C -0.191 4.191 29 C -0.110 4.110 30 H 0.088 0.912 31 H 0.002 0.998 32 H 0.026 0.974 33 H 0.259 0.741 34 H 0.324 0.676 35 H 0.033 0.967 36 H 0.068 0.932 37 H 0.073 0.927 38 H 0.049 0.951 39 H 0.062 0.938 40 H 0.064 0.936 41 H 0.042 0.958 42 H 0.087 0.913 43 H 0.122 0.878 44 H 0.119 0.881 45 H 0.117 0.883 46 H 0.118 0.882 47 H 0.117 0.883 48 H 0.065 0.935 49 H 0.051 0.949 50 H 0.059 0.941 51 H 0.075 0.925 52 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.411 2.298 -22.722 23.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.106 3.894 3 H 0.050 0.950 4 C -0.532 4.532 5 H 0.079 0.921 6 C -0.146 4.146 7 N -0.539 5.539 8 Si 0.725 3.275 9 H -0.203 1.203 10 H -0.215 1.215 11 H -0.204 1.204 12 N -0.310 5.310 13 C -0.022 4.022 14 C -0.132 4.132 15 C -0.030 4.030 16 H 0.059 0.941 17 C -0.204 4.204 18 N -0.241 5.241 19 C -0.045 4.045 20 C -0.071 4.071 21 C -0.115 4.115 22 C -0.140 4.140 23 C -0.143 4.143 24 C -0.141 4.141 25 C -0.134 4.134 26 C -0.024 4.024 27 H 0.100 0.900 28 C -0.249 4.249 29 C -0.148 4.148 30 H 0.106 0.894 31 H 0.022 0.978 32 H 0.045 0.955 33 H 0.069 0.931 34 H 0.141 0.859 35 H 0.051 0.949 36 H 0.086 0.914 37 H 0.092 0.908 38 H 0.068 0.932 39 H 0.081 0.919 40 H 0.083 0.917 41 H 0.060 0.940 42 H 0.105 0.895 43 H 0.140 0.860 44 H 0.137 0.863 45 H 0.135 0.865 46 H 0.136 0.864 47 H 0.135 0.865 48 H 0.084 0.916 49 H 0.070 0.930 50 H 0.078 0.922 51 H 0.094 0.906 52 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 5.376 2.151 -22.350 23.088 hybrid contribution -1.491 0.263 0.634 1.641 sum 3.886 2.414 -21.715 22.192 Atomic orbital electron populations 1.22436 1.01008 0.99056 1.00282 1.19160 0.89285 0.94349 0.86634 0.94955 1.21147 1.30015 1.12337 0.89675 0.92051 1.24946 0.95403 0.95224 0.98991 1.69876 1.37423 1.23296 1.23322 0.86590 0.79193 0.79616 0.82137 1.20301 1.21537 1.20424 1.60801 1.57976 1.08856 1.03336 1.21457 0.96061 0.94430 0.90216 1.21577 0.98573 0.97989 0.95050 1.21705 0.96899 0.94151 0.90203 0.94062 1.21919 0.97317 0.99710 1.01461 1.62227 1.31956 1.29212 1.00708 1.21179 1.01701 0.93560 0.88024 1.19795 0.93458 0.98160 0.95657 1.21029 0.97493 0.96567 0.96453 1.21150 0.98601 0.98726 0.95563 1.21116 0.93172 1.00177 0.99864 1.21091 0.97636 0.97892 0.97477 1.21086 0.98100 0.98936 0.95307 1.21641 0.86699 0.94751 0.99289 0.90045 1.22538 0.99843 1.00540 1.02008 1.21764 1.01603 0.97919 0.93561 0.89372 0.97849 0.95452 0.93113 0.85880 0.94928 0.91386 0.90811 0.93168 0.91927 0.91691 0.93981 0.89480 0.85964 0.86273 0.86450 0.86383 0.86481 0.91568 0.93048 0.92184 0.90643 0.92279 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.09 8.92 37.16 0.33 -3.76 16 2 C 0.21 5.36 2.39 -68.86 -0.16 5.19 16 3 H 0.03 0.90 7.15 -51.93 -0.37 0.52 16 4 C -0.49 -13.73 8.84 -34.44 -0.30 -14.03 16 5 H 0.06 1.73 7.81 -52.48 -0.41 1.32 16 6 C 0.05 1.52 5.30 -17.82 -0.09 1.43 16 7 N -0.90 -25.90 11.32 55.43 0.63 -25.27 16 8 Si 0.90 21.72 29.54 -169.99 -5.02 16.69 16 9 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 10 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 11 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 12 N -0.68 -14.43 6.04 -100.82 -0.61 -15.04 16 13 C 0.09 1.57 2.06 -67.59 -0.14 1.43 16 14 C -0.09 -1.58 4.86 -26.66 -0.13 -1.71 16 15 C 0.08 1.07 2.15 -67.72 -0.15 0.92 16 16 H 0.04 0.58 6.19 -51.93 -0.32 0.26 16 17 C -0.15 -1.72 8.57 37.16 0.32 -1.40 16 18 N -0.52 -6.50 4.44 -220.18 -0.98 -7.48 16 19 C 0.08 0.88 4.64 -4.97 -0.02 0.86 16 20 C -0.07 -0.74 4.68 -104.63 -0.49 -1.23 16 21 C -0.10 -0.99 9.72 -39.58 -0.38 -1.38 16 22 C -0.12 -1.14 10.05 -39.58 -0.40 -1.53 16 23 C -0.13 -1.11 10.05 -39.58 -0.40 -1.51 16 24 C -0.12 -1.13 10.05 -39.58 -0.40 -1.52 16 25 C -0.12 -1.15 8.26 -39.58 -0.33 -1.48 16 26 C 0.09 1.09 2.68 -67.72 -0.18 0.91 16 27 H 0.08 1.03 6.08 -51.93 -0.32 0.71 16 28 C -0.19 -2.32 8.19 37.16 0.30 -2.02 16 29 C -0.11 -1.64 4.88 -26.65 -0.13 -1.77 16 30 H 0.09 2.37 6.07 -51.93 -0.32 2.06 16 31 H 0.00 0.06 7.43 -51.93 -0.39 -0.33 16 32 H 0.03 0.63 8.13 -51.93 -0.42 0.21 16 33 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 34 H 0.32 6.62 8.10 -39.29 -0.32 6.31 16 35 H 0.03 0.63 5.53 -51.93 -0.29 0.34 16 36 H 0.07 1.29 7.48 -51.93 -0.39 0.90 16 37 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 38 H 0.05 0.50 6.50 -51.93 -0.34 0.16 16 39 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 41 H 0.04 0.44 6.14 -51.93 -0.32 0.12 16 42 H 0.09 0.87 5.81 -51.93 -0.30 0.57 16 43 H 0.12 1.16 8.06 -52.48 -0.42 0.74 16 44 H 0.12 0.88 8.06 -52.49 -0.42 0.46 16 45 H 0.12 0.80 8.06 -52.49 -0.42 0.38 16 46 H 0.12 0.86 8.06 -52.48 -0.42 0.43 16 47 H 0.12 1.07 7.81 -52.49 -0.41 0.66 16 48 H 0.07 0.91 4.80 -51.93 -0.25 0.67 16 49 H 0.05 0.55 6.19 -51.93 -0.32 0.23 16 50 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 51 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 52 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 LS Contribution 385.56 15.07 5.81 5.81 Total: -1.00 -28.64 385.56 -11.76 -40.40 By element: Atomic # 1 Polarization: 16.32 SS G_CDS: -8.84 Total: 7.48 kcal Atomic # 6 Polarization: -19.85 SS G_CDS: -2.75 Total: -22.60 kcal Atomic # 7 Polarization: -46.83 SS G_CDS: -0.96 Total: -47.79 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.69 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -28.64 -11.76 -40.40 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168024201.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.618 kcal (2) G-P(sol) polarization free energy of solvation -28.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.978 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.759 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.400 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.219 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds