Wall clock time and date at job start Tue Mar 31 2020 11:25:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 109.47588 * 2 1 4 4 C 1.50696 * 109.47308 * 120.00487 * 2 1 3 5 5 H 1.08007 * 120.00015 * 119.99303 * 4 2 1 6 6 C 1.37877 * 119.99972 * 299.99555 * 4 2 1 7 7 N 1.31511 * 119.99887 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99845 * 179.97438 * 6 4 2 9 9 H 1.48498 * 109.47008 * 60.00563 * 8 6 4 10 10 H 1.48504 * 109.47005 * 180.02562 * 8 6 4 11 11 H 1.48492 * 109.47277 * 300.00134 * 8 6 4 12 12 N 1.46906 * 109.46989 * 240.00451 * 2 1 3 13 13 C 1.46901 * 111.00223 * 84.99922 * 12 2 1 14 14 C 1.53110 * 109.57364 * 85.15812 * 13 12 2 15 15 C 1.53037 * 109.27951 * 177.59175 * 14 13 12 16 16 H 1.09005 * 109.45357 * 60.83376 * 15 14 13 17 17 C 1.53004 * 109.46570 * 180.80773 * 15 14 13 18 18 N 1.46848 * 109.52212 * 300.82369 * 15 14 13 19 19 C 1.46904 * 111.00009 * 185.83529 * 18 15 14 20 20 C 1.50700 * 109.47298 * 170.68949 * 19 18 15 21 21 C 1.38232 * 120.00211 * 275.76248 * 20 19 18 22 22 C 1.38237 * 120.00329 * 179.78657 * 21 20 19 23 23 C 1.38237 * 119.99478 * 0.46183 * 22 21 20 24 24 C 1.38235 * 119.99966 * 359.76776 * 23 22 21 25 25 C 1.38233 * 120.00328 * 0.02562 * 24 23 22 26 26 C 1.46846 * 111.19788 * 61.73991 * 18 15 14 27 27 H 1.08999 * 109.45403 * 178.24266 * 26 18 15 28 28 C 1.53005 * 109.46360 * 58.27474 * 26 18 15 29 29 C 1.53030 * 109.52500 * 298.25595 * 26 18 15 30 30 H 1.09004 * 109.46800 * 299.99765 * 1 2 3 31 31 H 1.09004 * 109.47436 * 59.99432 * 1 2 3 32 32 H 1.08990 * 109.47440 * 179.97438 * 1 2 3 33 33 H 0.97005 * 120.00058 * 179.97438 * 7 6 4 34 34 H 1.00903 * 110.99489 * 321.04741 * 12 2 1 35 35 H 1.09005 * 109.51773 * 325.00303 * 13 12 2 36 36 H 1.09000 * 109.50922 * 297.53411 * 14 13 12 37 37 H 1.09006 * 109.50465 * 57.65364 * 14 13 12 38 38 H 1.09003 * 109.47009 * 186.24389 * 17 15 14 39 39 H 1.09000 * 109.46690 * 306.24755 * 17 15 14 40 40 H 1.08997 * 109.47006 * 66.23879 * 17 15 14 41 41 H 1.08999 * 109.47502 * 290.69541 * 19 18 15 42 42 H 1.09005 * 109.46732 * 50.69581 * 19 18 15 43 43 H 1.08009 * 119.99997 * 359.97438 * 21 20 19 44 44 H 1.07995 * 120.00335 * 180.25102 * 22 21 20 45 45 H 1.08000 * 120.00012 * 179.79063 * 23 22 21 46 46 H 1.08006 * 120.00096 * 179.97438 * 24 23 22 47 47 H 1.07995 * 120.00142 * 179.97438 * 25 24 23 48 48 H 1.09001 * 109.46697 * 299.94851 * 28 26 18 49 49 H 1.09001 * 109.47019 * 59.94407 * 28 26 18 50 50 H 1.08994 * 109.47488 * 179.97438 * 28 26 18 51 51 H 1.08999 * 109.50628 * 299.24169 * 29 26 18 52 52 H 1.08999 * 109.53653 * 179.14001 * 29 26 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 1.2304 5 1 2.6532 -1.5887 1.1312 6 6 1.6994 -0.2395 2.4827 7 7 0.9429 0.8295 2.6034 8 14 2.3215 -1.1206 4.0078 9 1 3.8065 -1.1212 4.0079 10 1 1.8262 -0.4209 5.2204 11 1 1.8260 -2.5204 4.0075 12 7 2.0196 -0.6924 -1.1995 13 6 2.0824 0.2227 -2.3470 14 6 3.4130 0.9800 -2.3269 15 6 3.4970 1.8866 -3.5570 16 1 2.6800 2.6078 -3.5329 17 6 4.8340 2.6305 -3.5517 18 7 3.3950 1.0722 -4.7747 19 6 3.6101 1.8910 -5.9752 20 6 3.7260 0.9943 -7.1808 21 6 4.9414 0.4180 -7.4994 22 6 5.0466 -0.4081 -8.6028 23 6 3.9386 -0.6502 -9.3930 24 6 2.7243 -0.0701 -9.0771 25 6 2.6180 0.7525 -7.9713 26 6 2.1056 0.3725 -4.8391 27 1 2.0476 -0.1972 -5.7665 28 6 0.9681 1.3949 -4.7970 29 6 1.9800 -0.5793 -3.6473 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3634 -1.0276 -0.0005 33 1 0.7083 1.1607 3.4845 34 1 1.4494 -1.4978 -1.4101 35 1 1.2578 0.9335 -2.2914 36 1 3.4731 1.5864 -1.4232 37 1 4.2376 0.2673 -2.3431 38 1 4.8489 3.3567 -4.3644 39 1 4.9584 3.1473 -2.6001 40 1 5.6471 1.9173 -3.6867 41 1 2.7681 2.5705 -6.1073 42 1 4.5281 2.4677 -5.8619 43 1 5.8081 0.6107 -6.8845 44 1 5.9953 -0.8616 -8.8493 45 1 4.0215 -1.2929 -10.2570 46 1 1.8586 -0.2590 -9.6948 47 1 1.6694 1.2061 -7.7248 48 1 1.0257 1.9645 -3.8694 49 1 1.0573 2.0729 -5.6458 50 1 0.0109 0.8758 -4.8452 51 1 2.7821 -1.3165 -3.6843 52 1 1.0166 -1.0875 -3.6866 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001168024201.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:25:14 Heat of formation + Delta-G solvation = 9.574282 kcal Electronic energy + Delta-G solvation = -27565.009357 eV Core-core repulsion = 24142.056566 eV Total energy + Delta-G solvation = -3422.952791 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.32150 -39.73068 -37.72587 -35.17732 -34.21668 -33.52738 -31.71590 -31.58937 -29.59052 -28.31477 -27.58911 -27.22757 -26.25141 -23.62539 -23.28294 -22.30196 -22.02701 -21.36952 -19.53977 -18.32931 -17.55649 -16.96475 -16.89232 -16.69763 -16.40439 -15.95323 -15.76384 -15.35621 -15.00254 -14.85863 -14.48774 -14.17677 -14.14270 -13.96086 -13.62740 -13.47644 -13.43136 -13.32511 -13.10873 -12.89619 -12.84644 -12.75458 -12.61839 -12.50242 -12.47130 -12.15638 -12.05216 -11.86751 -11.80719 -11.72658 -11.51920 -11.36105 -10.99717 -10.86020 -10.47210 -9.71890 -9.59703 -9.11799 -8.91659 -8.08785 -6.19659 0.50572 0.59736 1.42736 1.44516 1.52220 2.44352 2.77401 3.19236 3.20418 3.52781 3.78511 3.87375 3.94997 4.02937 4.14494 4.22131 4.24824 4.32531 4.34666 4.44018 4.47519 4.51756 4.55821 4.59268 4.64351 4.71691 4.75224 4.81720 4.84438 4.86804 4.94468 5.00649 5.03153 5.08004 5.10540 5.16994 5.19385 5.23904 5.25430 5.31446 5.33403 5.46613 5.55798 5.65105 5.69838 5.71047 5.80287 5.85896 6.17628 6.24020 6.26530 6.30389 6.69883 6.88253 6.97528 7.50473 8.96547 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.024132 B = 0.002822 C = 0.002776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1160.009421 B = 9920.548165 C =10085.300442 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.222 3.778 3 H -0.001 1.001 4 C -0.514 4.514 5 H 0.053 0.947 6 C 0.009 3.991 7 N -0.923 5.923 8 Si 0.959 3.041 9 H -0.274 1.274 10 H -0.284 1.284 11 H -0.271 1.271 12 N -0.685 5.685 13 C 0.092 3.908 14 C -0.087 4.087 15 C 0.087 3.913 16 H 0.038 0.962 17 C -0.142 4.142 18 N -0.521 5.521 19 C 0.087 3.913 20 C -0.083 4.083 21 C -0.111 4.111 22 C -0.130 4.130 23 C -0.130 4.130 24 C -0.129 4.129 25 C -0.125 4.125 26 C 0.092 3.908 27 H 0.092 0.908 28 C -0.185 4.185 29 C -0.102 4.102 30 H 0.061 0.939 31 H 0.021 0.979 32 H 0.031 0.969 33 H 0.260 0.740 34 H 0.329 0.671 35 H 0.021 0.979 36 H 0.037 0.963 37 H 0.061 0.939 38 H 0.072 0.928 39 H 0.056 0.944 40 H 0.064 0.936 41 H 0.047 0.953 42 H 0.095 0.905 43 H 0.124 0.876 44 H 0.135 0.865 45 H 0.138 0.862 46 H 0.136 0.864 47 H 0.124 0.876 48 H 0.046 0.954 49 H 0.068 0.932 50 H 0.065 0.935 51 H 0.067 0.933 52 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.642 1.761 -24.653 25.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.114 3.886 3 H 0.017 0.983 4 C -0.553 4.553 5 H 0.071 0.929 6 C -0.189 4.189 7 N -0.564 5.564 8 Si 0.785 3.215 9 H -0.200 1.200 10 H -0.210 1.210 11 H -0.197 1.197 12 N -0.314 5.314 13 C -0.018 4.018 14 C -0.126 4.126 15 C -0.022 4.022 16 H 0.056 0.944 17 C -0.199 4.199 18 N -0.245 5.245 19 C -0.040 4.040 20 C -0.084 4.084 21 C -0.129 4.129 22 C -0.148 4.148 23 C -0.148 4.148 24 C -0.147 4.147 25 C -0.143 4.143 26 C -0.017 4.017 27 H 0.109 0.891 28 C -0.244 4.244 29 C -0.140 4.140 30 H 0.080 0.920 31 H 0.040 0.960 32 H 0.050 0.950 33 H 0.069 0.931 34 H 0.147 0.853 35 H 0.039 0.961 36 H 0.056 0.944 37 H 0.079 0.921 38 H 0.091 0.909 39 H 0.075 0.925 40 H 0.083 0.917 41 H 0.065 0.935 42 H 0.113 0.887 43 H 0.142 0.858 44 H 0.153 0.847 45 H 0.156 0.844 46 H 0.154 0.846 47 H 0.142 0.858 48 H 0.065 0.935 49 H 0.087 0.913 50 H 0.084 0.916 51 H 0.086 0.914 52 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 5.611 1.610 -24.303 24.994 hybrid contribution -1.547 0.421 1.165 1.982 sum 4.065 2.031 -23.138 23.580 Atomic orbital electron populations 1.22239 1.00339 0.99087 0.99782 1.18867 0.89612 0.92537 0.87625 0.98269 1.21445 1.30301 1.12391 0.91174 0.92886 1.25709 0.95500 0.95886 1.01844 1.70005 1.38094 1.24326 1.23954 0.85599 0.78644 0.78713 0.78567 1.19959 1.20974 1.19657 1.60698 1.57702 1.09447 1.03583 1.21497 0.95946 0.94013 0.90377 1.21474 0.97648 0.97751 0.95745 1.21541 0.97963 0.93359 0.89296 0.94433 1.21877 0.96003 0.99918 1.02112 1.62180 1.31844 1.29525 1.01000 1.21188 1.02230 0.93467 0.87112 1.19815 0.93965 0.98756 0.95835 1.21182 0.97591 0.97074 0.97066 1.21415 0.99624 0.98486 0.95283 1.21435 0.92932 1.00072 1.00323 1.21380 0.98490 0.97434 0.97407 1.21239 0.98198 0.99245 0.95621 1.21563 0.87199 0.94610 0.98360 0.89051 1.22473 0.99776 1.00420 1.01699 1.21683 1.01735 0.97839 0.92763 0.92046 0.96047 0.94989 0.93062 0.85321 0.96148 0.94411 0.92065 0.90894 0.92471 0.91719 0.93473 0.88734 0.85799 0.84692 0.84428 0.84572 0.85805 0.93521 0.91310 0.91632 0.91447 0.91465 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -7.65 8.92 71.98 0.64 -7.01 16 2 C 0.22 11.50 2.39 44.17 0.11 11.60 16 3 H 0.00 -0.04 7.15 -2.39 -0.02 -0.05 16 4 C -0.51 -29.25 8.84 25.60 0.23 -29.02 16 5 H 0.05 3.03 7.81 -2.91 -0.02 3.01 16 6 C 0.01 0.48 5.30 84.66 0.45 0.93 16 7 N -0.92 -54.16 11.32 21.45 0.24 -53.92 16 8 Si 0.96 44.81 29.54 68.60 2.03 46.83 16 9 H -0.27 -12.60 7.11 99.48 0.71 -11.89 16 10 H -0.28 -12.95 7.11 99.48 0.71 -12.25 16 11 H -0.27 -12.30 7.11 99.48 0.71 -11.60 16 12 N -0.68 -29.68 6.04 -472.90 -2.86 -32.54 16 13 C 0.09 3.31 2.06 44.99 0.09 3.40 16 14 C -0.09 -3.07 4.86 30.64 0.15 -2.92 16 15 C 0.09 2.35 2.15 44.94 0.10 2.44 16 16 H 0.04 1.06 6.19 -2.38 -0.01 1.04 16 17 C -0.14 -3.22 8.57 71.98 0.62 -2.60 16 18 N -0.52 -12.51 4.44 -850.50 -3.77 -16.28 16 19 C 0.09 1.69 4.64 85.56 0.40 2.09 16 20 C -0.08 -1.60 4.68 -19.87 -0.09 -1.70 16 21 C -0.11 -2.08 9.72 22.27 0.22 -1.86 16 22 C -0.13 -2.15 10.05 22.27 0.22 -1.93 16 23 C -0.13 -1.98 10.05 22.27 0.22 -1.76 16 24 C -0.13 -2.04 10.05 22.27 0.22 -1.81 16 25 C -0.12 -2.20 8.26 22.27 0.18 -2.01 16 26 C 0.09 2.22 2.68 44.94 0.12 2.34 16 27 H 0.09 2.11 6.08 -2.39 -0.01 2.10 16 28 C -0.19 -4.22 8.19 71.98 0.59 -3.63 16 29 C -0.10 -2.98 4.88 30.64 0.15 -2.83 16 30 H 0.06 3.38 6.07 -2.39 -0.01 3.36 16 31 H 0.02 0.93 7.43 -2.38 -0.02 0.91 16 32 H 0.03 1.49 8.13 -2.39 -0.02 1.47 16 33 H 0.26 14.56 8.31 -92.70 -0.77 13.79 16 34 H 0.33 13.53 8.10 -89.69 -0.73 12.80 16 35 H 0.02 0.80 5.53 -2.38 -0.01 0.79 16 36 H 0.04 1.52 7.48 -2.39 -0.02 1.50 16 37 H 0.06 2.27 8.14 -2.38 -0.02 2.25 16 38 H 0.07 1.33 6.50 -2.39 -0.02 1.31 16 39 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 40 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 41 H 0.05 0.88 6.14 -2.39 -0.01 0.87 16 42 H 0.09 1.70 5.81 -2.38 -0.01 1.68 16 43 H 0.12 2.19 8.06 -2.91 -0.02 2.17 16 44 H 0.14 1.70 8.06 -2.91 -0.02 1.67 16 45 H 0.14 1.47 8.06 -2.91 -0.02 1.45 16 46 H 0.14 1.58 8.06 -2.91 -0.02 1.55 16 47 H 0.12 1.94 7.81 -2.91 -0.02 1.92 16 48 H 0.05 1.26 4.80 -2.39 -0.01 1.25 16 49 H 0.07 1.33 6.19 -2.39 -0.01 1.31 16 50 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 51 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 52 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 Total: -1.00 -62.08 385.56 0.42 -61.66 By element: Atomic # 1 Polarization: 30.35 SS G_CDS: 0.17 Total: 30.52 kcal Atomic # 6 Polarization: -40.88 SS G_CDS: 4.61 Total: -36.27 kcal Atomic # 7 Polarization: -96.35 SS G_CDS: -6.39 Total: -102.74 kcal Atomic # 14 Polarization: 44.81 SS G_CDS: 2.03 Total: 46.83 kcal Total: -62.08 0.42 -61.66 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168024201.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.235 kcal (2) G-P(sol) polarization free energy of solvation -62.080 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.156 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.661 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds