Wall clock time and date at job start Tue Mar 31 2020 11:25:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 109.46826 * 2 1 4 4 C 1.50699 * 109.47028 * 120.00067 * 2 1 3 5 5 H 1.07995 * 119.99957 * 119.99865 * 4 2 1 6 6 C 1.37876 * 119.99834 * 300.00187 * 4 2 1 7 7 N 1.31509 * 120.00409 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 119.99735 * 180.02562 * 6 4 2 9 9 H 1.48494 * 109.47117 * 359.97438 * 8 6 4 10 10 H 1.48509 * 109.46867 * 119.99926 * 8 6 4 11 11 H 1.48494 * 109.47038 * 239.99522 * 8 6 4 12 12 N 1.46905 * 109.47018 * 240.00117 * 2 1 3 13 13 C 1.46907 * 110.99814 * 85.00110 * 12 2 1 14 14 C 1.53119 * 109.51849 * 204.99842 * 13 12 2 15 15 C 1.53039 * 109.27611 * 182.44176 * 14 13 12 16 16 H 1.09003 * 109.45910 * 299.17255 * 15 14 13 17 17 C 1.52996 * 109.46120 * 179.19675 * 15 14 13 18 18 N 1.46847 * 109.51632 * 59.18213 * 15 14 13 19 19 C 1.46894 * 111.00039 * 174.15309 * 18 15 14 20 20 C 1.50700 * 109.47057 * 175.73121 * 19 18 15 21 21 C 1.38231 * 120.00631 * 264.12011 * 20 19 18 22 22 C 1.38235 * 120.00206 * 179.79017 * 21 20 19 23 23 C 1.38230 * 120.00147 * 0.44015 * 22 21 20 24 24 C 1.38238 * 119.99602 * 359.81624 * 23 22 21 25 25 C 1.38235 * 120.00253 * 359.97438 * 24 23 22 26 26 C 1.46847 * 111.19859 * 298.24574 * 18 15 14 27 27 H 1.09000 * 109.46305 * 181.76931 * 26 18 15 28 28 C 1.53004 * 109.45977 * 301.74359 * 26 18 15 29 29 C 1.53034 * 109.51800 * 61.75533 * 26 18 15 30 30 H 1.08998 * 109.47346 * 60.00073 * 1 2 3 31 31 H 1.09004 * 109.47202 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.47212 * 300.00270 * 1 2 3 33 33 H 0.96996 * 120.00678 * 180.02562 * 7 6 4 34 34 H 1.00900 * 110.99480 * 208.95476 * 12 2 1 35 35 H 1.08998 * 109.51935 * 325.12419 * 13 12 2 36 36 H 1.09003 * 109.50676 * 62.49939 * 14 13 12 37 37 H 1.09001 * 109.53348 * 302.40200 * 14 13 12 38 38 H 1.08996 * 109.47421 * 59.97814 * 17 15 14 39 39 H 1.09000 * 109.46935 * 299.97652 * 17 15 14 40 40 H 1.09005 * 109.46814 * 179.97438 * 17 15 14 41 41 H 1.08996 * 109.47552 * 295.73511 * 19 18 15 42 42 H 1.09007 * 109.47181 * 55.73685 * 19 18 15 43 43 H 1.08004 * 119.99614 * 359.97438 * 21 20 19 44 44 H 1.07998 * 119.99569 * 180.28127 * 22 21 20 45 45 H 1.08001 * 120.00528 * 179.83554 * 23 22 21 46 46 H 1.08003 * 119.99831 * 180.02562 * 24 23 22 47 47 H 1.07998 * 119.99865 * 180.02562 * 25 24 23 48 48 H 1.09001 * 109.46580 * 181.17993 * 28 26 18 49 49 H 1.08993 * 109.46931 * 301.18025 * 28 26 18 50 50 H 1.09002 * 109.47110 * 61.18427 * 28 26 18 51 51 H 1.09001 * 109.50546 * 180.87840 * 29 26 18 52 52 H 1.08998 * 109.53432 * 60.77218 * 29 26 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1314 6 6 1.6992 -0.2394 2.4827 7 7 0.9435 0.8301 2.6034 8 14 2.3224 -1.1196 4.0079 9 1 3.1473 -2.2863 3.6038 10 1 3.1472 -0.1857 4.8161 11 1 1.1678 -1.5866 4.8165 12 7 2.0197 -0.6925 -1.1995 13 6 2.0825 0.2227 -2.3469 14 6 1.9770 -0.5791 -3.6472 15 6 2.1042 0.3723 -4.8391 16 1 1.2958 1.1030 -4.8084 17 6 2.0194 -0.4272 -6.1408 18 7 3.3956 1.0685 -4.7756 19 6 3.6123 1.8866 -5.9762 20 6 4.8942 2.6651 -5.8290 21 6 4.8626 3.9685 -5.3699 22 6 6.0389 4.6811 -5.2308 23 6 7.2461 4.0932 -5.5594 24 6 7.2772 2.7915 -6.0235 25 6 6.1013 2.0775 -6.1585 26 6 3.5005 1.8828 -3.5581 27 1 4.4544 2.4103 -3.5550 28 6 2.3565 2.8981 -3.5237 29 6 3.4151 0.9765 -2.3279 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3634 0.5139 0.8900 33 1 0.7094 1.1618 3.4844 34 1 2.9173 -1.1205 -1.0287 35 1 1.2592 0.9348 -2.2903 36 1 1.0119 -1.0842 -3.6861 37 1 2.7767 -1.3188 -3.6850 38 1 1.0608 -0.9436 -6.1883 39 1 2.8277 -1.1578 -6.1716 40 1 2.1095 0.2505 -6.9899 41 1 3.6789 1.2388 -6.8502 42 1 2.7791 2.5786 -6.0996 43 1 3.9190 4.4292 -5.1171 44 1 6.0145 5.6979 -4.8678 45 1 8.1650 4.6508 -5.4532 46 1 8.2204 2.3320 -6.2799 47 1 6.1257 1.0603 -6.5208 48 1 2.4463 3.5165 -2.6306 49 1 2.4053 3.5306 -4.4100 50 1 1.4028 2.3705 -3.5059 51 1 3.4774 1.5827 -1.4242 52 1 4.2378 0.2616 -2.3440 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001168024204.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:25:19 Heat of formation + Delta-G solvation = 24.149334 kcal Electronic energy + Delta-G solvation = -27718.879161 eV Core-core repulsion = 24296.558392 eV Total energy + Delta-G solvation = -3422.320770 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.37638 -38.81952 -36.06209 -33.57915 -33.15062 -31.97899 -30.98158 -30.20879 -28.44863 -26.93002 -26.33812 -25.43217 -24.95458 -22.67718 -22.21841 -21.36664 -20.69127 -19.48842 -18.43617 -16.88300 -16.55871 -15.84052 -15.69540 -15.46967 -14.95297 -14.89523 -14.19774 -14.04986 -13.78569 -13.64449 -13.51465 -13.08766 -12.67833 -12.66019 -12.51920 -12.46016 -12.34381 -12.04133 -11.91644 -11.60531 -11.37644 -11.23770 -11.10716 -11.04302 -11.00886 -10.87638 -10.58298 -10.45502 -10.43174 -10.15521 -10.11497 -9.91489 -9.51053 -9.00308 -8.85688 -8.78429 -8.45193 -8.11022 -7.15490 -6.00404 -4.06207 1.22462 1.31047 3.29834 3.37758 3.42258 3.59690 4.10977 4.42134 4.63754 4.72543 4.89110 4.92221 4.98097 5.03006 5.10229 5.25243 5.28835 5.32307 5.36741 5.43061 5.46084 5.53853 5.56575 5.66582 5.71989 5.77277 5.84695 5.89289 5.92506 5.95789 6.00825 6.09524 6.19269 6.21830 6.33229 6.36194 6.40654 6.43107 6.49645 6.54223 6.68346 6.81686 6.89170 6.92201 7.17996 7.21923 7.29340 7.30611 7.57073 7.81950 7.94421 8.30891 8.46440 8.74232 9.06135 9.59829 11.05928 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.015726 B = 0.003282 C = 0.002970 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1780.103366 B = 8528.678126 C = 9424.095534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.213 3.787 3 H 0.001 0.999 4 C -0.516 4.516 5 H 0.059 0.941 6 C 0.061 3.939 7 N -0.891 5.891 8 Si 0.894 3.106 9 H -0.273 1.273 10 H -0.285 1.285 11 H -0.284 1.284 12 N -0.684 5.684 13 C 0.089 3.911 14 C -0.095 4.095 15 C 0.078 3.922 16 H 0.043 0.957 17 C -0.146 4.146 18 N -0.518 5.518 19 C 0.089 3.911 20 C -0.076 4.076 21 C -0.115 4.115 22 C -0.122 4.122 23 C -0.124 4.124 24 C -0.123 4.123 25 C -0.099 4.099 26 C 0.085 3.915 27 H 0.081 0.919 28 C -0.189 4.189 29 C -0.136 4.136 30 H 0.002 0.998 31 H 0.030 0.970 32 H 0.079 0.921 33 H 0.259 0.741 34 H 0.331 0.669 35 H 0.068 0.932 36 H 0.067 0.933 37 H 0.066 0.934 38 H 0.059 0.941 39 H 0.063 0.937 40 H 0.051 0.949 41 H 0.084 0.916 42 H 0.040 0.960 43 H 0.120 0.880 44 H 0.119 0.881 45 H 0.118 0.882 46 H 0.119 0.881 47 H 0.123 0.877 48 H 0.061 0.939 49 H 0.050 0.950 50 H 0.063 0.937 51 H 0.067 0.933 52 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.607 5.583 -19.876 22.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.105 3.895 3 H 0.018 0.982 4 C -0.554 4.554 5 H 0.078 0.922 6 C -0.140 4.140 7 N -0.530 5.530 8 Si 0.722 3.278 9 H -0.197 1.197 10 H -0.211 1.211 11 H -0.210 1.210 12 N -0.313 5.313 13 C -0.022 4.022 14 C -0.134 4.134 15 C -0.030 4.030 16 H 0.061 0.939 17 C -0.204 4.204 18 N -0.243 5.243 19 C -0.038 4.038 20 C -0.076 4.076 21 C -0.134 4.134 22 C -0.140 4.140 23 C -0.142 4.142 24 C -0.141 4.141 25 C -0.117 4.117 26 C -0.024 4.024 27 H 0.100 0.900 28 C -0.247 4.247 29 C -0.176 4.176 30 H 0.021 0.979 31 H 0.049 0.951 32 H 0.098 0.902 33 H 0.069 0.931 34 H 0.148 0.852 35 H 0.086 0.914 36 H 0.086 0.914 37 H 0.085 0.915 38 H 0.078 0.922 39 H 0.082 0.918 40 H 0.070 0.930 41 H 0.102 0.898 42 H 0.058 0.942 43 H 0.138 0.862 44 H 0.137 0.863 45 H 0.136 0.864 46 H 0.137 0.863 47 H 0.141 0.859 48 H 0.080 0.920 49 H 0.069 0.931 50 H 0.082 0.918 51 H 0.085 0.915 52 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 7.238 5.057 -19.858 21.732 hybrid contribution 0.452 0.883 1.217 1.570 sum 7.690 5.940 -18.641 21.022 Atomic orbital electron populations 1.21723 0.98146 0.99225 0.99131 1.19070 0.92322 0.92372 0.85697 0.98176 1.21324 1.31168 1.12402 0.90529 0.92245 1.24912 0.95092 0.95003 0.99008 1.69904 1.36852 1.22962 1.23245 0.86500 0.78607 0.79656 0.82993 1.19746 1.21148 1.21031 1.60794 1.32054 1.32538 1.05961 1.21578 0.95361 0.93478 0.91817 1.21595 1.02094 0.97400 0.92264 1.21692 0.89581 0.95641 0.96086 0.93920 1.21907 1.02140 1.00168 0.96155 1.62298 1.32403 1.28532 1.01035 1.21113 0.93317 0.94879 0.94511 1.19787 0.95151 0.93946 0.98707 1.21173 0.98417 0.94354 0.99431 1.21112 0.92628 0.99932 1.00347 1.21131 0.97810 0.95540 0.99719 1.21149 0.98155 0.94722 1.00056 1.21020 0.91763 0.99565 0.99369 1.21663 0.98169 0.92660 0.89873 0.90049 1.22555 1.00561 0.99950 1.01674 1.22328 0.99805 0.99135 0.96312 0.97928 0.95061 0.90231 0.93073 0.85199 0.91376 0.91388 0.91526 0.92217 0.91830 0.93025 0.89774 0.94192 0.86221 0.86276 0.86385 0.86252 0.85945 0.91958 0.93115 0.91770 0.91454 0.91582 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.12 9.17 37.16 0.34 -2.78 16 2 C 0.21 5.38 2.42 -68.86 -0.17 5.21 16 3 H 0.00 0.02 7.16 -51.93 -0.37 -0.36 16 4 C -0.52 -14.21 8.59 -34.44 -0.30 -14.50 16 5 H 0.06 1.63 7.62 -52.49 -0.40 1.23 16 6 C 0.06 1.70 5.30 -17.82 -0.09 1.61 16 7 N -0.89 -25.57 11.32 55.43 0.63 -24.94 16 8 Si 0.89 21.43 29.54 -169.99 -5.02 16.41 16 9 H -0.27 -6.46 7.11 56.52 0.40 -6.05 16 10 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 11 H -0.28 -6.79 7.11 56.52 0.40 -6.38 16 12 N -0.68 -14.57 6.06 -100.82 -0.61 -15.18 16 13 C 0.09 1.57 2.03 -67.59 -0.14 1.44 16 14 C -0.10 -1.43 4.98 -26.65 -0.13 -1.56 16 15 C 0.08 0.99 2.14 -67.72 -0.15 0.84 16 16 H 0.04 0.56 6.22 -51.93 -0.32 0.24 16 17 C -0.15 -1.52 8.76 37.16 0.33 -1.19 16 18 N -0.52 -6.51 4.54 -220.19 -1.00 -7.51 16 19 C 0.09 0.95 4.11 -4.98 -0.02 0.93 16 20 C -0.08 -0.83 4.13 -104.63 -0.43 -1.26 16 21 C -0.12 -1.23 7.92 -39.58 -0.31 -1.54 16 22 C -0.12 -1.21 10.05 -39.59 -0.40 -1.61 16 23 C -0.12 -1.18 10.05 -39.58 -0.40 -1.58 16 24 C -0.12 -1.19 10.05 -39.58 -0.40 -1.59 16 25 C -0.10 -1.03 9.72 -39.58 -0.38 -1.42 16 26 C 0.09 1.18 2.41 -67.72 -0.16 1.02 16 27 H 0.08 1.17 5.85 -51.93 -0.30 0.87 16 28 C -0.19 -2.51 7.93 37.16 0.29 -2.22 16 29 C -0.14 -2.27 4.86 -26.65 -0.13 -2.40 16 30 H 0.00 0.04 7.43 -51.93 -0.39 -0.35 16 31 H 0.03 0.78 8.14 -51.93 -0.42 0.35 16 32 H 0.08 2.18 6.07 -51.93 -0.32 1.86 16 33 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 34 H 0.33 7.02 7.94 -39.29 -0.31 6.71 16 35 H 0.07 1.32 5.51 -51.93 -0.29 1.03 16 36 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 37 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 38 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.05 0.47 6.42 -51.93 -0.33 0.14 16 41 H 0.08 0.82 6.46 -51.93 -0.34 0.49 16 42 H 0.04 0.42 6.76 -51.93 -0.35 0.07 16 43 H 0.12 1.20 6.24 -52.48 -0.33 0.87 16 44 H 0.12 0.97 8.06 -52.49 -0.42 0.55 16 45 H 0.12 0.88 8.06 -52.49 -0.42 0.46 16 46 H 0.12 0.92 8.06 -52.48 -0.42 0.50 16 47 H 0.12 1.17 8.06 -52.49 -0.42 0.75 16 48 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 49 H 0.05 0.58 4.79 -51.93 -0.25 0.34 16 50 H 0.06 0.92 4.80 -51.93 -0.25 0.67 16 51 H 0.07 1.26 7.49 -51.93 -0.39 0.87 16 52 H 0.07 1.12 8.09 -51.93 -0.42 0.70 16 LS Contribution 381.66 15.07 5.75 5.75 Total: -1.00 -28.44 381.66 -11.62 -40.06 By element: Atomic # 1 Polarization: 16.72 SS G_CDS: -8.72 Total: 8.00 kcal Atomic # 6 Polarization: -19.94 SS G_CDS: -2.65 Total: -22.59 kcal Atomic # 7 Polarization: -46.64 SS G_CDS: -0.98 Total: -47.63 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -28.44 -11.62 -40.06 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168024204.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.205 kcal (2) G-P(sol) polarization free energy of solvation -28.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.765 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.616 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.055 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds