Wall clock time and date at job start Tue Mar 31 2020 11:25:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 109.46826 * 2 1 4 4 C 1.50699 * 109.47028 * 120.00067 * 2 1 3 5 5 H 1.07995 * 119.99957 * 119.99865 * 4 2 1 6 6 C 1.37876 * 119.99834 * 300.00187 * 4 2 1 7 7 N 1.31509 * 120.00409 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 119.99735 * 180.02562 * 6 4 2 9 9 H 1.48494 * 109.47117 * 359.97438 * 8 6 4 10 10 H 1.48509 * 109.46867 * 119.99926 * 8 6 4 11 11 H 1.48494 * 109.47038 * 239.99522 * 8 6 4 12 12 N 1.46905 * 109.47018 * 240.00117 * 2 1 3 13 13 C 1.46907 * 110.99814 * 85.00110 * 12 2 1 14 14 C 1.53119 * 109.51849 * 204.99842 * 13 12 2 15 15 C 1.53039 * 109.27611 * 182.44176 * 14 13 12 16 16 H 1.09003 * 109.45910 * 299.17255 * 15 14 13 17 17 C 1.52996 * 109.46120 * 179.19675 * 15 14 13 18 18 N 1.46847 * 109.51632 * 59.18213 * 15 14 13 19 19 C 1.46894 * 111.00039 * 174.15309 * 18 15 14 20 20 C 1.50700 * 109.47057 * 175.73121 * 19 18 15 21 21 C 1.38231 * 120.00631 * 264.12011 * 20 19 18 22 22 C 1.38235 * 120.00206 * 179.79017 * 21 20 19 23 23 C 1.38230 * 120.00147 * 0.44015 * 22 21 20 24 24 C 1.38238 * 119.99602 * 359.81624 * 23 22 21 25 25 C 1.38235 * 120.00253 * 359.97438 * 24 23 22 26 26 C 1.46847 * 111.19859 * 298.24574 * 18 15 14 27 27 H 1.09000 * 109.46305 * 181.76931 * 26 18 15 28 28 C 1.53004 * 109.45977 * 301.74359 * 26 18 15 29 29 C 1.53034 * 109.51800 * 61.75533 * 26 18 15 30 30 H 1.08998 * 109.47346 * 60.00073 * 1 2 3 31 31 H 1.09004 * 109.47202 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.47212 * 300.00270 * 1 2 3 33 33 H 0.96996 * 120.00678 * 180.02562 * 7 6 4 34 34 H 1.00900 * 110.99480 * 208.95476 * 12 2 1 35 35 H 1.08998 * 109.51935 * 325.12419 * 13 12 2 36 36 H 1.09003 * 109.50676 * 62.49939 * 14 13 12 37 37 H 1.09001 * 109.53348 * 302.40200 * 14 13 12 38 38 H 1.08996 * 109.47421 * 59.97814 * 17 15 14 39 39 H 1.09000 * 109.46935 * 299.97652 * 17 15 14 40 40 H 1.09005 * 109.46814 * 179.97438 * 17 15 14 41 41 H 1.08996 * 109.47552 * 295.73511 * 19 18 15 42 42 H 1.09007 * 109.47181 * 55.73685 * 19 18 15 43 43 H 1.08004 * 119.99614 * 359.97438 * 21 20 19 44 44 H 1.07998 * 119.99569 * 180.28127 * 22 21 20 45 45 H 1.08001 * 120.00528 * 179.83554 * 23 22 21 46 46 H 1.08003 * 119.99831 * 180.02562 * 24 23 22 47 47 H 1.07998 * 119.99865 * 180.02562 * 25 24 23 48 48 H 1.09001 * 109.46580 * 181.17993 * 28 26 18 49 49 H 1.08993 * 109.46931 * 301.18025 * 28 26 18 50 50 H 1.09002 * 109.47110 * 61.18427 * 28 26 18 51 51 H 1.09001 * 109.50546 * 180.87840 * 29 26 18 52 52 H 1.08998 * 109.53432 * 60.77218 * 29 26 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1314 6 6 1.6992 -0.2394 2.4827 7 7 0.9435 0.8301 2.6034 8 14 2.3224 -1.1196 4.0079 9 1 3.1473 -2.2863 3.6038 10 1 3.1472 -0.1857 4.8161 11 1 1.1678 -1.5866 4.8165 12 7 2.0197 -0.6925 -1.1995 13 6 2.0825 0.2227 -2.3469 14 6 1.9770 -0.5791 -3.6472 15 6 2.1042 0.3723 -4.8391 16 1 1.2958 1.1030 -4.8084 17 6 2.0194 -0.4272 -6.1408 18 7 3.3956 1.0685 -4.7756 19 6 3.6123 1.8866 -5.9762 20 6 4.8942 2.6651 -5.8290 21 6 4.8626 3.9685 -5.3699 22 6 6.0389 4.6811 -5.2308 23 6 7.2461 4.0932 -5.5594 24 6 7.2772 2.7915 -6.0235 25 6 6.1013 2.0775 -6.1585 26 6 3.5005 1.8828 -3.5581 27 1 4.4544 2.4103 -3.5550 28 6 2.3565 2.8981 -3.5237 29 6 3.4151 0.9765 -2.3279 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3634 0.5139 0.8900 33 1 0.7094 1.1618 3.4844 34 1 2.9173 -1.1205 -1.0287 35 1 1.2592 0.9348 -2.2903 36 1 1.0119 -1.0842 -3.6861 37 1 2.7767 -1.3188 -3.6850 38 1 1.0608 -0.9436 -6.1883 39 1 2.8277 -1.1578 -6.1716 40 1 2.1095 0.2505 -6.9899 41 1 3.6789 1.2388 -6.8502 42 1 2.7791 2.5786 -6.0996 43 1 3.9190 4.4292 -5.1171 44 1 6.0145 5.6979 -4.8678 45 1 8.1650 4.6508 -5.4532 46 1 8.2204 2.3320 -6.2799 47 1 6.1257 1.0603 -6.5208 48 1 2.4463 3.5165 -2.6306 49 1 2.4053 3.5306 -4.4100 50 1 1.4028 2.3705 -3.5059 51 1 3.4774 1.5827 -1.4242 52 1 4.2378 0.2616 -2.3440 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001168024204.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:25:17 Heat of formation + Delta-G solvation = 8.482016 kcal Electronic energy + Delta-G solvation = -27719.558547 eV Core-core repulsion = 24296.558392 eV Total energy + Delta-G solvation = -3423.000156 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.42008 -39.74137 -37.67403 -35.20422 -34.22923 -33.44926 -31.76314 -31.57828 -29.69844 -28.36909 -27.56098 -27.25705 -26.24317 -23.50284 -23.29885 -22.64819 -21.81360 -21.23186 -19.63040 -18.49176 -17.64460 -17.02478 -16.93714 -16.68986 -16.25794 -15.87994 -15.69378 -15.33602 -15.09197 -14.97936 -14.57335 -14.26022 -14.22922 -13.77546 -13.56876 -13.51059 -13.43829 -13.25440 -13.11877 -12.90587 -12.88911 -12.68864 -12.60960 -12.47264 -12.33794 -12.23534 -12.11288 -11.93771 -11.87341 -11.75377 -11.53483 -11.25723 -11.00469 -10.83665 -10.57302 -9.76126 -9.64604 -9.11646 -8.94176 -8.13467 -6.27150 0.46119 0.55653 1.39886 1.41731 1.53627 2.41025 2.75952 3.14976 3.16937 3.54876 3.77923 3.81859 3.96436 3.99901 4.14856 4.18831 4.22919 4.27220 4.31346 4.43263 4.45876 4.54384 4.55599 4.62373 4.66377 4.68278 4.79773 4.81543 4.84526 4.95257 4.96929 4.99238 5.06999 5.10922 5.15472 5.17890 5.20340 5.21809 5.25352 5.33794 5.35963 5.48283 5.55279 5.61497 5.67291 5.70662 5.75567 5.87859 6.14880 6.20509 6.22437 6.26699 6.51753 6.81836 7.03318 7.43444 8.92345 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.015726 B = 0.003282 C = 0.002970 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1780.103366 B = 8528.678126 C = 9424.095534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C 0.221 3.779 3 H -0.032 1.032 4 C -0.536 4.536 5 H 0.057 0.943 6 C 0.013 3.987 7 N -0.918 5.918 8 Si 0.961 3.039 9 H -0.267 1.267 10 H -0.281 1.281 11 H -0.280 1.280 12 N -0.682 5.682 13 C 0.091 3.909 14 C -0.086 4.086 15 C 0.082 3.918 16 H 0.040 0.960 17 C -0.140 4.140 18 N -0.520 5.520 19 C 0.093 3.907 20 C -0.088 4.088 21 C -0.127 4.127 22 C -0.133 4.133 23 C -0.130 4.130 24 C -0.130 4.130 25 C -0.109 4.109 26 C 0.096 3.904 27 H 0.080 0.920 28 C -0.183 4.183 29 C -0.128 4.128 30 H 0.017 0.983 31 H 0.027 0.973 32 H 0.056 0.944 33 H 0.262 0.738 34 H 0.330 0.670 35 H 0.051 0.949 36 H 0.065 0.935 37 H 0.064 0.936 38 H 0.066 0.934 39 H 0.063 0.937 40 H 0.068 0.932 41 H 0.099 0.901 42 H 0.044 0.956 43 H 0.122 0.878 44 H 0.133 0.867 45 H 0.138 0.862 46 H 0.138 0.862 47 H 0.130 0.870 48 H 0.049 0.951 49 H 0.072 0.928 50 H 0.053 0.947 51 H 0.037 0.963 52 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.558 5.230 -21.424 23.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.112 3.888 3 H -0.014 1.014 4 C -0.574 4.574 5 H 0.075 0.925 6 C -0.186 4.186 7 N -0.558 5.558 8 Si 0.786 3.214 9 H -0.191 1.191 10 H -0.207 1.207 11 H -0.206 1.206 12 N -0.312 5.312 13 C -0.019 4.019 14 C -0.125 4.125 15 C -0.027 4.027 16 H 0.058 0.942 17 C -0.197 4.197 18 N -0.245 5.245 19 C -0.034 4.034 20 C -0.089 4.089 21 C -0.146 4.146 22 C -0.150 4.150 23 C -0.148 4.148 24 C -0.147 4.147 25 C -0.128 4.128 26 C -0.013 4.013 27 H 0.098 0.902 28 C -0.241 4.241 29 C -0.168 4.168 30 H 0.036 0.964 31 H 0.046 0.954 32 H 0.074 0.926 33 H 0.071 0.929 34 H 0.147 0.853 35 H 0.070 0.930 36 H 0.084 0.916 37 H 0.083 0.917 38 H 0.085 0.915 39 H 0.082 0.918 40 H 0.087 0.913 41 H 0.117 0.883 42 H 0.062 0.938 43 H 0.139 0.861 44 H 0.151 0.849 45 H 0.155 0.845 46 H 0.156 0.844 47 H 0.148 0.852 48 H 0.068 0.932 49 H 0.090 0.910 50 H 0.072 0.928 51 H 0.056 0.944 52 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 8.192 4.703 -21.433 23.422 hybrid contribution 0.190 1.037 1.668 1.973 sum 8.382 5.739 -19.765 22.223 Atomic orbital electron populations 1.21546 0.98082 0.98702 0.98713 1.18826 0.92291 0.90732 0.86911 1.01416 1.21634 1.31460 1.12570 0.91742 0.92456 1.25717 0.95196 0.95675 1.01989 1.70028 1.37615 1.24095 1.24014 0.85468 0.78136 0.78632 0.79153 1.19087 1.20656 1.20556 1.60755 1.32032 1.32960 1.05403 1.21613 0.95291 0.93172 0.91831 1.21500 1.01885 0.97472 0.91603 1.21655 0.89527 0.95319 0.96155 0.94191 1.21856 1.02604 1.00164 0.95075 1.62263 1.32334 1.28739 1.01140 1.21151 0.93485 0.94986 0.93774 1.19862 0.95391 0.94171 0.99436 1.21299 0.98881 0.94583 0.99816 1.21378 0.92681 1.00721 1.00270 1.21441 0.98499 0.95750 0.99085 1.21441 0.98785 0.94885 0.99633 1.21213 0.91956 1.00087 0.99531 1.21445 0.98305 0.92138 0.89386 0.90172 1.22490 0.99705 0.99810 1.02135 1.22178 0.98905 0.99000 0.96719 0.96372 0.95405 0.92567 0.92915 0.85262 0.93038 0.91605 0.91684 0.91485 0.91795 0.91291 0.88261 0.93767 0.86057 0.84906 0.84453 0.84418 0.85208 0.93163 0.90971 0.92785 0.94399 0.91984 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.77 9.17 71.98 0.66 -5.11 16 2 C 0.22 11.52 2.42 44.17 0.11 11.63 16 3 H -0.03 -1.83 7.16 -2.39 -0.02 -1.85 16 4 C -0.54 -30.06 8.59 25.60 0.22 -29.84 16 5 H 0.06 3.17 7.62 -2.91 -0.02 3.15 16 6 C 0.01 0.74 5.30 84.66 0.45 1.19 16 7 N -0.92 -53.71 11.32 21.45 0.24 -53.47 16 8 Si 0.96 44.19 29.54 68.60 2.03 46.22 16 9 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 10 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 11 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 12 N -0.68 -29.70 6.06 -472.88 -2.86 -32.57 16 13 C 0.09 3.30 2.03 44.99 0.09 3.39 16 14 C -0.09 -2.53 4.98 30.65 0.15 -2.38 16 15 C 0.08 1.93 2.14 44.94 0.10 2.03 16 16 H 0.04 0.99 6.22 -2.39 -0.01 0.98 16 17 C -0.14 -2.52 8.76 71.98 0.63 -1.89 16 18 N -0.52 -12.31 4.54 -850.54 -3.86 -16.17 16 19 C 0.09 1.79 4.11 85.56 0.35 2.14 16 20 C -0.09 -1.78 4.13 -19.87 -0.08 -1.86 16 21 C -0.13 -2.55 7.92 22.27 0.18 -2.37 16 22 C -0.13 -2.44 10.05 22.27 0.22 -2.22 16 23 C -0.13 -2.23 10.05 22.27 0.22 -2.01 16 24 C -0.13 -2.26 10.05 22.27 0.22 -2.04 16 25 C -0.11 -2.10 9.72 22.27 0.22 -1.88 16 26 C 0.10 2.66 2.41 44.94 0.11 2.77 16 27 H 0.08 2.28 5.85 -2.39 -0.01 2.26 16 28 C -0.18 -4.84 7.93 71.98 0.57 -4.27 16 29 C -0.13 -4.41 4.86 30.65 0.15 -4.26 16 30 H 0.02 0.82 7.43 -2.39 -0.02 0.81 16 31 H 0.03 1.39 8.14 -2.39 -0.02 1.37 16 32 H 0.06 3.16 6.07 -2.39 -0.01 3.14 16 33 H 0.26 14.49 8.31 -92.71 -0.77 13.72 16 34 H 0.33 14.33 7.94 -89.69 -0.71 13.62 16 35 H 0.05 2.04 5.51 -2.39 -0.01 2.03 16 36 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 37 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 38 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 39 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 40 H 0.07 1.03 6.42 -2.38 -0.02 1.01 16 41 H 0.10 1.64 6.46 -2.39 -0.02 1.62 16 42 H 0.04 0.83 6.76 -2.38 -0.02 0.81 16 43 H 0.12 2.29 6.24 -2.91 -0.02 2.27 16 44 H 0.13 1.97 8.06 -2.91 -0.02 1.95 16 45 H 0.14 1.74 8.06 -2.91 -0.02 1.72 16 46 H 0.14 1.80 8.06 -2.91 -0.02 1.78 16 47 H 0.13 2.21 8.06 -2.91 -0.02 2.19 16 48 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 49 H 0.07 1.58 4.79 -2.39 -0.01 1.57 16 50 H 0.05 1.54 4.80 -2.39 -0.01 1.53 16 51 H 0.04 1.50 7.49 -2.39 -0.02 1.48 16 52 H 0.06 2.15 8.09 -2.39 -0.02 2.13 16 Total: -1.00 -61.45 381.66 0.30 -61.15 By element: Atomic # 1 Polarization: 31.62 SS G_CDS: 0.19 Total: 31.81 kcal Atomic # 6 Polarization: -41.54 SS G_CDS: 4.57 Total: -36.97 kcal Atomic # 7 Polarization: -95.72 SS G_CDS: -6.48 Total: -102.20 kcal Atomic # 14 Polarization: 44.19 SS G_CDS: 2.03 Total: 46.22 kcal Total: -61.45 0.30 -61.15 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168024204.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.632 kcal (2) G-P(sol) polarization free energy of solvation -61.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.150 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds