Wall clock time and date at job start Tue Mar 31 2020 11:25:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.45204 * 2 1 4 4 C 1.53040 * 109.46006 * 240.03273 * 2 1 3 5 5 C 1.53119 * 109.27780 * 299.15898 * 4 2 1 6 6 N 1.46905 * 109.52289 * 182.44038 * 5 4 2 7 7 C 1.46897 * 110.99734 * 58.63840 * 6 5 4 8 8 C 1.46898 * 111.00212 * 294.68396 * 6 5 4 9 9 C 1.50697 * 109.47164 * 189.99930 * 8 6 5 10 10 H 1.07997 * 119.99988 * 359.97438 * 9 8 6 11 11 C 1.37875 * 119.99964 * 180.02562 * 9 8 6 12 12 N 1.31511 * 120.00275 * 180.02562 * 11 9 8 13 13 Si 1.86802 * 120.00181 * 359.97438 * 11 9 8 14 14 H 1.48496 * 109.46850 * 90.00361 * 13 11 9 15 15 H 1.48494 * 109.47404 * 210.00600 * 13 11 9 16 16 H 1.48509 * 109.46993 * 330.00665 * 13 11 9 17 17 C 1.53119 * 109.16123 * 302.34944 * 5 4 2 18 18 C 1.53032 * 109.28090 * 57.65380 * 17 5 4 19 19 H 1.09004 * 109.46410 * 60.83309 * 18 17 5 20 20 C 1.53001 * 109.45637 * 180.81070 * 18 17 5 21 21 N 1.46846 * 109.52292 * 300.82153 * 18 17 5 22 22 C 1.46899 * 111.00276 * 185.83907 * 21 18 17 23 23 C 1.50704 * 109.47296 * 166.12429 * 22 21 18 24 24 C 1.38229 * 120.00028 * 270.20869 * 23 22 21 25 25 C 1.38238 * 119.99793 * 180.21463 * 24 23 22 26 26 C 1.38232 * 119.99823 * 359.53024 * 25 24 23 27 27 C 1.38226 * 120.00334 * 0.28299 * 26 25 24 28 28 C 1.38236 * 120.00106 * 359.95173 * 27 26 25 29 29 H 1.08998 * 109.46820 * 300.02341 * 1 2 3 30 30 H 1.09000 * 109.46884 * 60.02356 * 1 2 3 31 31 H 1.09002 * 109.46996 * 180.02562 * 1 2 3 32 32 H 1.09005 * 109.50495 * 179.22149 * 4 2 1 33 33 H 1.08994 * 109.50873 * 59.10381 * 4 2 1 34 34 H 1.09001 * 109.57180 * 62.28258 * 5 4 2 35 35 H 1.09005 * 109.46916 * 59.99912 * 7 6 5 36 36 H 1.09000 * 109.47388 * 179.97438 * 7 6 5 37 37 H 1.09000 * 109.47578 * 300.00053 * 7 6 5 38 38 H 1.08997 * 109.47088 * 310.00507 * 8 6 5 39 39 H 1.09003 * 109.46600 * 70.00142 * 8 6 5 40 40 H 0.97003 * 120.00511 * 179.97438 * 12 11 9 41 41 H 1.08997 * 109.49802 * 297.70956 * 17 5 4 42 42 H 1.09004 * 109.53364 * 177.61485 * 17 5 4 43 43 H 1.08996 * 109.46958 * 187.20358 * 20 18 17 44 44 H 1.09003 * 109.46993 * 307.20409 * 20 18 17 45 45 H 1.08996 * 109.47075 * 67.20191 * 20 18 17 46 46 H 1.08995 * 109.47063 * 46.12558 * 22 21 18 47 47 H 1.08998 * 109.46975 * 286.12499 * 22 21 18 48 48 H 1.08003 * 120.00063 * 0.02562 * 24 23 22 49 49 H 1.07997 * 119.99951 * 179.80956 * 25 24 23 50 50 H 1.08009 * 119.99485 * 180.25240 * 26 25 24 51 51 H 1.07999 * 120.00626 * 179.97438 * 27 26 25 52 52 H 1.07996 * 120.00223 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8930 1.0278 0.0000 4 6 2.0399 -0.7208 -1.2501 5 6 1.5443 -2.1695 -1.2358 6 7 2.0788 -2.8827 -2.4036 7 6 3.5476 -2.8601 -2.4073 8 6 1.5405 -2.3264 -3.6520 9 6 1.9100 -3.2259 -4.8032 10 1 2.4873 -4.1211 -4.6253 11 6 1.5119 -2.9055 -6.0838 12 7 1.8339 -3.6907 -7.0884 13 14 0.5140 -1.3566 -6.3917 14 1 1.4326 -0.2211 -6.6596 15 1 -0.3723 -1.5639 -7.5650 16 1 -0.3116 -1.0537 -5.1950 17 6 2.0270 -2.8531 0.0465 18 6 1.5175 -2.0706 1.2589 19 1 0.4275 -2.0608 1.2530 20 6 2.0144 -2.7389 2.5424 21 7 2.0193 -0.6918 1.1993 22 6 1.6652 0.0504 2.4165 23 6 2.4682 1.3242 2.4796 24 6 3.7007 1.3340 3.1053 25 6 4.4352 2.5034 3.1671 26 6 3.9414 3.6607 2.5947 27 6 2.7107 3.6501 1.9656 28 6 1.9740 2.4818 1.9080 29 1 -0.3633 0.5142 0.8898 30 1 -0.3633 0.5135 -0.8902 31 1 -0.3633 -1.0277 0.0005 32 1 3.1298 -0.7091 -1.2578 33 1 1.6637 -0.2163 -2.1400 34 1 0.4548 -2.1830 -1.2679 35 1 3.9206 -3.3411 -1.5030 36 1 3.9170 -3.3954 -3.2820 37 1 3.8951 -1.8275 -2.4393 38 1 0.4553 -2.2554 -3.5800 39 1 1.9593 -1.3337 -3.8176 40 1 1.5535 -3.4655 -7.9893 41 1 3.1166 -2.8750 0.0591 42 1 1.6421 -3.8723 0.0832 43 1 1.5496 -2.2607 3.4045 44 1 1.7503 -3.7964 2.5271 45 1 3.0974 -2.6359 2.6098 46 1 1.8846 -0.5610 3.2917 47 1 0.6024 0.2914 2.3988 48 1 4.0885 0.4287 3.5486 49 1 5.3968 2.5118 3.6587 50 1 4.5172 4.5735 2.6394 51 1 2.3247 4.5543 1.5187 52 1 1.0125 2.4733 1.4162 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001168041376.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:25:12 Heat of formation + Delta-G solvation = 40.156670 kcal Electronic energy + Delta-G solvation = -27872.219538 eV Core-core repulsion = 24450.592898 eV Total energy + Delta-G solvation = -3421.626640 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.47019 -39.03850 -36.72364 -33.34287 -33.17476 -32.25566 -31.01903 -30.30142 -28.36205 -27.42004 -26.52676 -26.01606 -24.75692 -22.79506 -22.05580 -21.76906 -21.00341 -19.53174 -18.26920 -16.92362 -16.86456 -15.97288 -15.93383 -15.55787 -15.02187 -14.89299 -14.50384 -14.14028 -13.90573 -13.71042 -13.60816 -13.38931 -13.00789 -12.86468 -12.66097 -12.63816 -12.38291 -12.23132 -12.17414 -11.90910 -11.67783 -11.53502 -11.27170 -11.19174 -11.05756 -10.93723 -10.86677 -10.73531 -10.45133 -10.26408 -10.10877 -9.82643 -9.66729 -9.23653 -9.04354 -8.89997 -8.55048 -8.21677 -7.24422 -6.02841 -3.99378 1.19276 1.26688 3.28867 3.36477 3.38302 3.53125 4.04365 4.43701 4.59626 4.65455 4.70474 4.85046 4.88945 4.92125 4.98311 5.12220 5.19683 5.24229 5.26318 5.30701 5.33349 5.38948 5.47010 5.50762 5.55921 5.59015 5.76401 5.77071 5.83000 5.85794 5.90022 5.96248 5.97129 6.08939 6.14505 6.21805 6.26290 6.29800 6.33671 6.35498 6.36754 6.49117 6.53412 6.69283 6.79017 6.85271 6.93724 7.05135 7.14365 7.19393 7.64995 7.97784 8.13217 8.70444 9.06510 9.59451 11.10487 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.016170 B = 0.003475 C = 0.003168 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1731.200984 B = 8055.808084 C = 8835.905404 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.084 3.916 3 H 0.081 0.919 4 C -0.144 4.144 5 C 0.082 3.918 6 N -0.524 5.524 7 C 0.032 3.968 8 C 0.163 3.837 9 C -0.507 4.507 10 H 0.080 0.920 11 C 0.068 3.932 12 N -0.902 5.902 13 Si 0.874 3.126 14 H -0.278 1.278 15 H -0.286 1.286 16 H -0.268 1.268 17 C -0.101 4.101 18 C 0.079 3.921 19 H 0.044 0.956 20 C -0.147 4.147 21 N -0.518 5.518 22 C 0.082 3.918 23 C -0.070 4.070 24 C -0.100 4.100 25 C -0.122 4.122 26 C -0.124 4.124 27 C -0.122 4.122 28 C -0.115 4.115 29 H 0.051 0.949 30 H 0.061 0.939 31 H 0.065 0.935 32 H 0.073 0.927 33 H 0.066 0.934 34 H 0.072 0.928 35 H 0.050 0.950 36 H 0.076 0.924 37 H 0.016 0.984 38 H 0.024 0.976 39 H -0.015 1.015 40 H 0.263 0.737 41 H 0.072 0.928 42 H 0.072 0.928 43 H 0.051 0.949 44 H 0.061 0.939 45 H 0.064 0.936 46 H 0.087 0.913 47 H 0.045 0.955 48 H 0.121 0.879 49 H 0.119 0.881 50 H 0.118 0.882 51 H 0.119 0.881 52 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.728 11.691 23.545 26.298 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.249 4.249 2 C -0.025 4.025 3 H 0.099 0.901 4 C -0.184 4.184 5 C -0.027 4.027 6 N -0.246 5.246 7 C -0.116 4.116 8 C 0.037 3.963 9 C -0.545 4.545 10 H 0.098 0.902 11 C -0.134 4.134 12 N -0.541 5.541 13 Si 0.701 3.299 14 H -0.204 1.204 15 H -0.212 1.212 16 H -0.192 1.192 17 C -0.139 4.139 18 C -0.029 4.029 19 H 0.062 0.938 20 C -0.204 4.204 21 N -0.243 5.243 22 C -0.045 4.045 23 C -0.070 4.070 24 C -0.118 4.118 25 C -0.140 4.140 26 C -0.143 4.143 27 C -0.140 4.140 28 C -0.133 4.133 29 H 0.070 0.930 30 H 0.080 0.920 31 H 0.084 0.916 32 H 0.092 0.908 33 H 0.084 0.916 34 H 0.090 0.910 35 H 0.069 0.931 36 H 0.095 0.905 37 H 0.034 0.966 38 H 0.042 0.958 39 H 0.003 0.997 40 H 0.073 0.927 41 H 0.091 0.909 42 H 0.090 0.910 43 H 0.070 0.930 44 H 0.080 0.920 45 H 0.083 0.917 46 H 0.105 0.895 47 H 0.063 0.937 48 H 0.139 0.861 49 H 0.137 0.863 50 H 0.136 0.864 51 H 0.137 0.863 52 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 1.061 11.105 23.321 25.852 hybrid contribution -1.171 1.870 -0.494 2.261 sum -0.110 12.975 22.827 26.257 Atomic orbital electron populations 1.22528 0.97979 1.02667 1.01747 1.21664 0.92377 0.98235 0.90176 0.90062 1.22302 1.02104 0.97855 0.96122 1.21792 0.99073 0.90372 0.91502 1.62177 1.06895 1.53328 1.02195 1.22309 0.88637 0.99026 1.01660 1.20155 0.94919 0.93619 0.87655 1.21068 1.34541 1.09392 0.89511 0.90156 1.24895 0.95850 0.96503 0.96109 1.69892 1.46852 1.37743 0.99614 0.86885 0.80797 0.84168 0.78039 1.20377 1.21195 1.19233 1.21684 1.01847 0.98406 0.91976 1.21656 0.97244 0.87986 0.96009 0.93780 1.21929 1.02135 1.00267 0.96107 1.62195 1.59559 1.01457 1.01053 1.21191 0.96621 0.92363 0.94369 1.19777 0.95327 0.94429 0.97471 1.21006 0.93924 0.97816 0.99071 1.21141 0.99784 0.93045 1.00073 1.21120 0.96191 0.98271 0.98680 1.21109 0.95173 0.98010 0.99706 1.21088 1.00097 0.92701 0.99454 0.92966 0.91965 0.91615 0.90834 0.91561 0.90986 0.93127 0.90546 0.96591 0.95762 0.99748 0.92726 0.90938 0.90977 0.92967 0.91965 0.91707 0.89497 0.93738 0.86110 0.86269 0.86399 0.86324 0.86434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.28 8.20 37.16 0.30 -1.97 16 2 C 0.08 1.09 2.72 -67.72 -0.18 0.91 16 3 H 0.08 1.07 5.83 -51.93 -0.30 0.76 16 4 C -0.14 -2.29 4.21 -26.65 -0.11 -2.40 16 5 C 0.08 1.38 1.98 -67.59 -0.13 1.25 16 6 N -0.52 -10.95 4.74 -236.18 -1.12 -12.07 16 7 C 0.03 0.62 8.63 60.06 0.52 1.14 16 8 C 0.16 3.97 3.24 -4.98 -0.02 3.95 16 9 C -0.51 -14.52 9.01 -34.44 -0.31 -14.83 16 10 H 0.08 2.50 7.37 -52.49 -0.39 2.12 16 11 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 12 N -0.90 -27.87 13.96 55.43 0.77 -27.10 16 13 Si 0.87 21.74 27.47 -169.99 -4.67 17.07 16 14 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 15 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 16 H -0.27 -6.40 6.54 56.52 0.37 -6.03 16 17 C -0.10 -1.43 4.51 -26.65 -0.12 -1.55 16 18 C 0.08 0.92 2.15 -67.73 -0.15 0.78 16 19 H 0.04 0.52 6.19 -51.93 -0.32 0.20 16 20 C -0.15 -1.40 8.56 37.16 0.32 -1.08 16 21 N -0.52 -6.10 4.40 -220.18 -0.97 -7.07 16 22 C 0.08 0.82 4.77 -4.97 -0.02 0.79 16 23 C -0.07 -0.72 5.00 -104.62 -0.52 -1.25 16 24 C -0.10 -0.99 9.70 -39.58 -0.38 -1.38 16 25 C -0.12 -1.13 10.05 -39.58 -0.40 -1.53 16 26 C -0.12 -1.14 10.05 -39.59 -0.40 -1.53 16 27 C -0.12 -1.16 10.05 -39.59 -0.40 -1.56 16 28 C -0.11 -1.17 8.01 -39.58 -0.32 -1.49 16 29 H 0.05 0.54 6.36 -51.93 -0.33 0.21 16 30 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.06 0.83 4.80 -51.93 -0.25 0.58 16 32 H 0.07 1.24 6.26 -51.93 -0.33 0.91 16 33 H 0.07 1.15 6.89 -51.93 -0.36 0.80 16 34 H 0.07 1.26 6.45 -51.93 -0.34 0.92 16 35 H 0.05 0.86 6.28 -51.93 -0.33 0.53 16 36 H 0.08 1.67 6.76 -51.93 -0.35 1.32 16 37 H 0.02 0.30 6.23 -51.93 -0.32 -0.02 16 38 H 0.02 0.61 7.06 -51.93 -0.37 0.24 16 39 H -0.02 -0.37 6.43 -51.93 -0.33 -0.70 16 40 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 41 H 0.07 1.07 6.31 -51.93 -0.33 0.74 16 42 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 43 H 0.05 0.43 6.47 -51.93 -0.34 0.09 16 44 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 45 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 46 H 0.09 0.78 5.58 -51.93 -0.29 0.49 16 47 H 0.04 0.44 6.02 -51.93 -0.31 0.12 16 48 H 0.12 1.06 8.06 -52.48 -0.42 0.64 16 49 H 0.12 0.87 8.06 -52.49 -0.42 0.44 16 50 H 0.12 0.84 8.06 -52.48 -0.42 0.42 16 51 H 0.12 0.92 8.06 -52.49 -0.42 0.50 16 52 H 0.12 1.12 7.88 -52.49 -0.41 0.70 16 LS Contribution 375.93 15.07 5.67 5.67 Total: -1.00 -30.61 375.93 -11.28 -41.89 By element: Atomic # 1 Polarization: 10.04 SS G_CDS: -8.54 Total: 1.50 kcal Atomic # 6 Polarization: -17.45 SS G_CDS: -2.42 Total: -19.87 kcal Atomic # 7 Polarization: -44.93 SS G_CDS: -1.32 Total: -46.24 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -4.67 Total: 17.07 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -30.61 -11.28 -41.89 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168041376.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.042 kcal (2) G-P(sol) polarization free energy of solvation -30.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.434 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.886 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds