Wall clock time and date at job start Tue Mar 31 2020 11:25:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.45204 * 2 1 4 4 C 1.53040 * 109.46006 * 240.03273 * 2 1 3 5 5 C 1.53119 * 109.27780 * 299.15898 * 4 2 1 6 6 N 1.46905 * 109.52289 * 182.44038 * 5 4 2 7 7 C 1.46897 * 110.99734 * 58.63840 * 6 5 4 8 8 C 1.46898 * 111.00212 * 294.68396 * 6 5 4 9 9 C 1.50697 * 109.47164 * 189.99930 * 8 6 5 10 10 H 1.07997 * 119.99988 * 359.97438 * 9 8 6 11 11 C 1.37875 * 119.99964 * 180.02562 * 9 8 6 12 12 N 1.31511 * 120.00275 * 180.02562 * 11 9 8 13 13 Si 1.86802 * 120.00181 * 359.97438 * 11 9 8 14 14 H 1.48496 * 109.46850 * 90.00361 * 13 11 9 15 15 H 1.48494 * 109.47404 * 210.00600 * 13 11 9 16 16 H 1.48509 * 109.46993 * 330.00665 * 13 11 9 17 17 C 1.53119 * 109.16123 * 302.34944 * 5 4 2 18 18 C 1.53032 * 109.28090 * 57.65380 * 17 5 4 19 19 H 1.09004 * 109.46410 * 60.83309 * 18 17 5 20 20 C 1.53001 * 109.45637 * 180.81070 * 18 17 5 21 21 N 1.46846 * 109.52292 * 300.82153 * 18 17 5 22 22 C 1.46899 * 111.00276 * 185.83907 * 21 18 17 23 23 C 1.50704 * 109.47296 * 166.12429 * 22 21 18 24 24 C 1.38229 * 120.00028 * 270.20869 * 23 22 21 25 25 C 1.38238 * 119.99793 * 180.21463 * 24 23 22 26 26 C 1.38232 * 119.99823 * 359.53024 * 25 24 23 27 27 C 1.38226 * 120.00334 * 0.28299 * 26 25 24 28 28 C 1.38236 * 120.00106 * 359.95173 * 27 26 25 29 29 H 1.08998 * 109.46820 * 300.02341 * 1 2 3 30 30 H 1.09000 * 109.46884 * 60.02356 * 1 2 3 31 31 H 1.09002 * 109.46996 * 180.02562 * 1 2 3 32 32 H 1.09005 * 109.50495 * 179.22149 * 4 2 1 33 33 H 1.08994 * 109.50873 * 59.10381 * 4 2 1 34 34 H 1.09001 * 109.57180 * 62.28258 * 5 4 2 35 35 H 1.09005 * 109.46916 * 59.99912 * 7 6 5 36 36 H 1.09000 * 109.47388 * 179.97438 * 7 6 5 37 37 H 1.09000 * 109.47578 * 300.00053 * 7 6 5 38 38 H 1.08997 * 109.47088 * 310.00507 * 8 6 5 39 39 H 1.09003 * 109.46600 * 70.00142 * 8 6 5 40 40 H 0.97003 * 120.00511 * 179.97438 * 12 11 9 41 41 H 1.08997 * 109.49802 * 297.70956 * 17 5 4 42 42 H 1.09004 * 109.53364 * 177.61485 * 17 5 4 43 43 H 1.08996 * 109.46958 * 187.20358 * 20 18 17 44 44 H 1.09003 * 109.46993 * 307.20409 * 20 18 17 45 45 H 1.08996 * 109.47075 * 67.20191 * 20 18 17 46 46 H 1.08995 * 109.47063 * 46.12558 * 22 21 18 47 47 H 1.08998 * 109.46975 * 286.12499 * 22 21 18 48 48 H 1.08003 * 120.00063 * 0.02562 * 24 23 22 49 49 H 1.07997 * 119.99951 * 179.80956 * 25 24 23 50 50 H 1.08009 * 119.99485 * 180.25240 * 26 25 24 51 51 H 1.07999 * 120.00626 * 179.97438 * 27 26 25 52 52 H 1.07996 * 120.00223 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8930 1.0278 0.0000 4 6 2.0399 -0.7208 -1.2501 5 6 1.5443 -2.1695 -1.2358 6 7 2.0788 -2.8827 -2.4036 7 6 3.5476 -2.8601 -2.4073 8 6 1.5405 -2.3264 -3.6520 9 6 1.9100 -3.2259 -4.8032 10 1 2.4873 -4.1211 -4.6253 11 6 1.5119 -2.9055 -6.0838 12 7 1.8339 -3.6907 -7.0884 13 14 0.5140 -1.3566 -6.3917 14 1 1.4326 -0.2211 -6.6596 15 1 -0.3723 -1.5639 -7.5650 16 1 -0.3116 -1.0537 -5.1950 17 6 2.0270 -2.8531 0.0465 18 6 1.5175 -2.0706 1.2589 19 1 0.4275 -2.0608 1.2530 20 6 2.0144 -2.7389 2.5424 21 7 2.0193 -0.6918 1.1993 22 6 1.6652 0.0504 2.4165 23 6 2.4682 1.3242 2.4796 24 6 3.7007 1.3340 3.1053 25 6 4.4352 2.5034 3.1671 26 6 3.9414 3.6607 2.5947 27 6 2.7107 3.6501 1.9656 28 6 1.9740 2.4818 1.9080 29 1 -0.3633 0.5142 0.8898 30 1 -0.3633 0.5135 -0.8902 31 1 -0.3633 -1.0277 0.0005 32 1 3.1298 -0.7091 -1.2578 33 1 1.6637 -0.2163 -2.1400 34 1 0.4548 -2.1830 -1.2679 35 1 3.9206 -3.3411 -1.5030 36 1 3.9170 -3.3954 -3.2820 37 1 3.8951 -1.8275 -2.4393 38 1 0.4553 -2.2554 -3.5800 39 1 1.9593 -1.3337 -3.8176 40 1 1.5535 -3.4655 -7.9893 41 1 3.1166 -2.8750 0.0591 42 1 1.6421 -3.8723 0.0832 43 1 1.5496 -2.2607 3.4045 44 1 1.7503 -3.7964 2.5271 45 1 3.0974 -2.6359 2.6098 46 1 1.8846 -0.5610 3.2917 47 1 0.6024 0.2914 2.3988 48 1 4.0885 0.4287 3.5486 49 1 5.3968 2.5118 3.6587 50 1 4.5172 4.5735 2.6394 51 1 2.3247 4.5543 1.5187 52 1 1.0125 2.4733 1.4162 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001168041376.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:25:11 Heat of formation + Delta-G solvation = 21.691926 kcal Electronic energy + Delta-G solvation = -27873.020229 eV Core-core repulsion = 24450.592898 eV Total energy + Delta-G solvation = -3422.427331 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.48969 -39.88855 -38.10711 -34.93397 -34.23537 -33.76244 -31.71407 -31.48880 -29.78025 -28.80836 -27.61239 -27.24967 -26.08757 -23.58639 -23.44857 -22.88527 -21.97690 -20.87471 -19.42008 -19.01069 -17.58647 -17.03390 -16.91289 -16.74481 -16.31869 -16.03495 -15.79654 -15.43631 -15.28297 -14.82438 -14.76299 -14.39373 -14.35616 -14.20059 -13.96687 -13.52905 -13.49436 -13.36914 -13.21344 -13.11716 -12.80354 -12.71822 -12.60341 -12.52537 -12.44367 -12.12192 -11.96498 -11.86847 -11.79664 -11.74297 -11.53758 -11.43511 -11.13916 -11.04447 -10.78602 -9.74806 -9.62460 -9.11599 -8.91331 -8.29300 -6.31943 0.48460 0.56738 1.31469 1.33091 1.43981 2.32524 2.75354 3.03483 3.19875 3.24397 3.78100 3.82051 3.93181 4.00388 4.07949 4.13638 4.21320 4.23369 4.31881 4.39821 4.43815 4.47065 4.51587 4.53904 4.60462 4.63299 4.65986 4.69964 4.81153 4.81919 4.87929 4.88935 4.98426 5.00975 5.04974 5.11821 5.15085 5.17300 5.18791 5.22584 5.26330 5.33894 5.36996 5.51967 5.55223 5.62588 5.68153 5.77195 6.01846 6.15927 6.21421 6.26328 6.41269 6.69353 6.74812 7.31593 8.87499 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.016170 B = 0.003475 C = 0.003168 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1731.200984 B = 8055.808084 C = 8835.905404 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.092 3.908 3 H 0.082 0.918 4 C -0.138 4.138 5 C 0.083 3.917 6 N -0.540 5.540 7 C 0.041 3.959 8 C 0.177 3.823 9 C -0.515 4.515 10 H 0.038 0.962 11 C 0.008 3.992 12 N -0.948 5.948 13 Si 0.944 3.056 14 H -0.268 1.268 15 H -0.279 1.279 16 H -0.251 1.251 17 C -0.094 4.094 18 C 0.084 3.916 19 H 0.047 0.953 20 C -0.141 4.141 21 N -0.524 5.524 22 C 0.086 3.914 23 C -0.082 4.082 24 C -0.111 4.111 25 C -0.130 4.130 26 C -0.132 4.132 27 C -0.133 4.133 28 C -0.127 4.127 29 H 0.071 0.929 30 H 0.056 0.944 31 H 0.058 0.942 32 H 0.062 0.938 33 H 0.047 0.953 34 H 0.067 0.933 35 H 0.077 0.923 36 H 0.043 0.957 37 H 0.020 0.980 38 H 0.022 0.978 39 H -0.015 1.015 40 H 0.267 0.733 41 H 0.067 0.933 42 H 0.070 0.930 43 H 0.069 0.931 44 H 0.067 0.933 45 H 0.062 0.938 46 H 0.100 0.900 47 H 0.050 0.950 48 H 0.130 0.870 49 H 0.137 0.863 50 H 0.136 0.864 51 H 0.132 0.868 52 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.009 13.646 26.010 29.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C -0.017 4.017 3 H 0.100 0.900 4 C -0.177 4.177 5 C -0.025 4.025 6 N -0.263 5.263 7 C -0.107 4.107 8 C 0.050 3.950 9 C -0.554 4.554 10 H 0.056 0.944 11 C -0.189 4.189 12 N -0.589 5.589 13 Si 0.767 3.233 14 H -0.194 1.194 15 H -0.205 1.205 16 H -0.174 1.174 17 C -0.132 4.132 18 C -0.024 4.024 19 H 0.065 0.935 20 C -0.199 4.199 21 N -0.248 5.248 22 C -0.040 4.040 23 C -0.083 4.083 24 C -0.129 4.129 25 C -0.148 4.148 26 C -0.150 4.150 27 C -0.151 4.151 28 C -0.146 4.146 29 H 0.089 0.911 30 H 0.075 0.925 31 H 0.077 0.923 32 H 0.080 0.920 33 H 0.066 0.934 34 H 0.086 0.914 35 H 0.095 0.905 36 H 0.062 0.938 37 H 0.038 0.962 38 H 0.040 0.960 39 H 0.003 0.997 40 H 0.076 0.924 41 H 0.085 0.915 42 H 0.089 0.911 43 H 0.088 0.912 44 H 0.086 0.914 45 H 0.081 0.919 46 H 0.119 0.881 47 H 0.068 0.932 48 H 0.148 0.852 49 H 0.155 0.845 50 H 0.154 0.846 51 H 0.150 0.850 52 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 0.346 13.062 25.821 28.938 hybrid contribution -0.861 1.202 -1.224 1.919 sum -0.514 14.264 24.597 28.438 Atomic orbital electron populations 1.22472 0.97063 1.02424 1.02470 1.21498 0.92967 0.97804 0.89394 0.90000 1.22183 1.01222 0.97191 0.97133 1.21863 0.98687 0.91077 0.90916 1.62082 1.07581 1.54383 1.02226 1.22200 0.88016 0.99054 1.01434 1.19851 0.94679 0.92534 0.87947 1.21304 1.33875 1.08720 0.91459 0.94369 1.25818 0.97120 1.00226 0.95704 1.70045 1.48485 1.40094 1.00271 0.85763 0.79357 0.79566 0.78573 1.19361 1.20487 1.17439 1.21624 1.01410 0.98530 0.91651 1.21611 0.97310 0.87794 0.95735 0.93538 1.21884 1.02049 1.00568 0.95354 1.62151 1.59759 1.01577 1.01334 1.21212 0.96855 0.92269 0.93696 1.19881 0.95742 0.94609 0.98025 1.21218 0.93982 0.98523 0.99219 1.21431 1.00509 0.92912 0.99969 1.21425 0.96261 0.99088 0.98216 1.21375 0.95438 0.98467 0.99793 1.21239 1.00500 0.93050 0.99772 0.91051 0.92483 0.92269 0.91979 0.93414 0.91442 0.90455 0.93796 0.96162 0.95953 0.99722 0.92440 0.91469 0.91145 0.91178 0.91391 0.91921 0.88150 0.93220 0.85238 0.84538 0.84597 0.84968 0.86081 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -4.06 8.20 71.98 0.59 -3.47 16 2 C 0.09 2.23 2.72 44.94 0.12 2.36 16 3 H 0.08 2.01 5.83 -2.39 -0.01 1.99 16 4 C -0.14 -4.27 4.21 30.65 0.13 -4.14 16 5 C 0.08 2.75 1.98 44.99 0.09 2.84 16 6 N -0.54 -22.83 4.74 -901.14 -4.27 -27.10 16 7 C 0.04 1.63 8.63 127.69 1.10 2.73 16 8 C 0.18 8.72 3.24 85.56 0.28 9.00 16 9 C -0.52 -30.53 9.01 25.60 0.23 -30.30 16 10 H 0.04 2.52 7.37 -2.91 -0.02 2.50 16 11 C 0.01 0.50 5.47 84.65 0.46 0.97 16 12 N -0.95 -60.27 13.96 21.45 0.30 -59.97 16 13 Si 0.94 44.98 27.47 68.60 1.88 46.86 16 14 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 15 H -0.28 -12.95 7.11 99.48 0.71 -12.25 16 16 H -0.25 -11.17 6.54 99.48 0.65 -10.51 16 17 C -0.09 -2.52 4.51 30.64 0.14 -2.38 16 18 C 0.08 1.75 2.15 44.94 0.10 1.85 16 19 H 0.05 0.98 6.19 -2.38 -0.01 0.96 16 20 C -0.14 -2.26 8.56 71.98 0.62 -1.64 16 21 N -0.52 -11.14 4.40 -850.53 -3.74 -14.88 16 22 C 0.09 1.49 4.77 85.56 0.41 1.90 16 23 C -0.08 -1.53 5.00 -19.86 -0.10 -1.63 16 24 C -0.11 -1.97 9.70 22.27 0.22 -1.75 16 25 C -0.13 -2.13 10.05 22.27 0.22 -1.91 16 26 C -0.13 -2.13 10.05 22.27 0.22 -1.91 16 27 C -0.13 -2.28 10.05 22.27 0.22 -2.06 16 28 C -0.13 -2.35 8.01 22.27 0.18 -2.17 16 29 H 0.07 1.28 6.36 -2.39 -0.02 1.27 16 30 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 31 H 0.06 1.37 4.80 -2.39 -0.01 1.36 16 32 H 0.06 2.05 6.26 -2.38 -0.01 2.03 16 33 H 0.05 1.64 6.89 -2.39 -0.02 1.62 16 34 H 0.07 2.30 6.45 -2.39 -0.02 2.28 16 35 H 0.08 2.61 6.28 -2.38 -0.01 2.60 16 36 H 0.04 2.00 6.76 -2.39 -0.02 1.99 16 37 H 0.02 0.77 6.23 -2.39 -0.01 0.76 16 38 H 0.02 1.11 7.06 -2.39 -0.02 1.09 16 39 H -0.01 -0.73 6.43 -2.39 -0.02 -0.74 16 40 H 0.27 15.77 8.31 -92.71 -0.77 15.00 16 41 H 0.07 1.88 6.31 -2.39 -0.02 1.86 16 42 H 0.07 1.91 8.14 -2.38 -0.02 1.89 16 43 H 0.07 0.89 6.47 -2.39 -0.02 0.88 16 44 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 45 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 46 H 0.10 1.46 5.58 -2.39 -0.01 1.45 16 47 H 0.05 0.82 6.02 -2.39 -0.01 0.80 16 48 H 0.13 1.98 8.06 -2.91 -0.02 1.95 16 49 H 0.14 1.65 8.06 -2.91 -0.02 1.63 16 50 H 0.14 1.61 8.06 -2.91 -0.02 1.58 16 51 H 0.13 1.80 8.06 -2.91 -0.02 1.77 16 52 H 0.12 2.06 7.88 -2.91 -0.02 2.04 16 Total: -1.00 -67.55 375.93 0.24 -67.32 By element: Atomic # 1 Polarization: 18.68 SS G_CDS: 0.84 Total: 19.52 kcal Atomic # 6 Polarization: -36.97 SS G_CDS: 5.23 Total: -31.74 kcal Atomic # 7 Polarization: -94.25 SS G_CDS: -7.72 Total: -101.96 kcal Atomic # 14 Polarization: 44.98 SS G_CDS: 1.88 Total: 46.86 kcal Total: -67.55 0.24 -67.32 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168041376.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.009 kcal (2) G-P(sol) polarization free energy of solvation -67.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.455 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.317 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.692 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds