Wall clock time and date at job start Tue Mar 31 2020 11:09:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.47581 * 2 1 4 4 C 1.53003 * 109.47649 * 179.97438 * 3 2 1 5 5 N 1.46495 * 109.47315 * 179.97438 * 4 3 2 6 6 C 1.36932 * 120.00169 * 270.00239 * 5 4 3 7 7 H 1.08004 * 119.99912 * 141.74007 * 6 5 4 8 8 C 1.38807 * 120.00136 * 321.74290 * 6 5 4 9 9 N 1.31618 * 120.00419 * 156.35833 * 8 6 5 10 10 Si 1.86805 * 119.99809 * 336.35230 * 8 6 5 11 11 H 1.48493 * 109.47073 * 95.19551 * 10 8 6 12 12 H 1.48498 * 109.47168 * 215.19590 * 10 8 6 13 13 H 1.48498 * 109.47075 * 335.19577 * 10 8 6 14 14 C 1.46499 * 119.99757 * 90.00272 * 5 4 3 15 15 H 1.09005 * 110.62821 * 2.18908 * 14 5 4 16 16 C 1.55144 * 110.85631 * 238.98140 * 14 5 4 17 17 C 1.54905 * 101.65196 * 205.89326 * 16 14 5 18 18 H 1.08997 * 110.37490 * 278.23452 * 17 16 14 19 19 C 1.53004 * 110.37290 * 155.89942 * 17 16 14 20 20 N 1.47843 * 104.80015 * 37.07233 * 17 16 14 21 21 C 1.46898 * 111.00083 * 213.63605 * 20 17 16 22 22 C 1.50695 * 109.46888 * 190.71292 * 21 20 17 23 23 C 1.38240 * 120.00220 * 269.72076 * 22 21 20 24 24 C 1.38235 * 120.00103 * 179.78483 * 23 22 21 25 25 C 1.38234 * 119.99673 * 0.47148 * 24 23 22 26 26 C 1.38235 * 120.00503 * 359.76613 * 25 24 23 27 27 C 1.38230 * 119.99603 * 0.02562 * 26 25 24 28 28 C 1.47446 * 108.56149 * 335.90411 * 20 17 16 29 29 H 1.08996 * 109.47255 * 179.97438 * 1 2 3 30 30 H 1.08993 * 109.46902 * 299.99980 * 1 2 3 31 31 H 1.09005 * 109.46668 * 59.99830 * 1 2 3 32 32 H 1.09003 * 109.47259 * 239.99587 * 2 1 3 33 33 H 1.09005 * 109.47181 * 120.00293 * 2 1 3 34 34 H 1.08999 * 109.46713 * 59.99755 * 3 2 1 35 35 H 1.08998 * 109.47415 * 300.00447 * 3 2 1 36 36 H 1.08996 * 109.46536 * 59.99654 * 4 3 2 37 37 H 1.09005 * 109.46927 * 300.00370 * 4 3 2 38 38 H 0.96993 * 120.00161 * 180.02562 * 9 8 6 39 39 H 1.08996 * 110.99195 * 323.98443 * 16 14 5 40 40 H 1.09003 * 110.99140 * 87.76706 * 16 14 5 41 41 H 1.09000 * 109.47079 * 307.04879 * 19 17 16 42 42 H 1.09007 * 109.47235 * 67.04155 * 19 17 16 43 43 H 1.08993 * 109.47745 * 187.04401 * 19 17 16 44 44 H 1.08997 * 109.47106 * 70.71433 * 21 20 17 45 45 H 1.08998 * 109.46798 * 310.70984 * 21 20 17 46 46 H 1.07998 * 119.99853 * 0.02562 * 23 22 21 47 47 H 1.07998 * 120.00264 * 180.25280 * 24 23 22 48 48 H 1.08003 * 119.99751 * 179.78310 * 25 24 23 49 49 H 1.07997 * 120.00140 * 180.02562 * 26 25 24 50 50 H 1.07999 * 119.99995 * 179.97438 * 27 26 25 51 51 H 1.08996 * 109.89387 * 120.39630 * 28 20 17 52 52 H 1.09007 * 109.88355 * 241.58322 * 28 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5701 1.4424 0.0006 5 7 4.0585 2.8236 0.0000 6 6 4.2872 3.4684 -1.1861 7 1 4.0432 4.5157 -1.2872 8 6 4.8325 2.7762 -2.2586 9 7 4.6356 3.2049 -3.4873 10 14 5.8462 1.2362 -1.9579 11 1 4.9779 0.0387 -2.0889 12 1 6.9437 1.1633 -2.9555 13 1 6.4227 1.2823 -0.5902 14 6 4.3021 3.5149 1.2685 15 1 4.1083 2.8510 2.1110 16 6 3.4385 4.7995 1.3722 17 6 4.2826 5.6668 2.3391 18 1 4.0941 5.3760 3.3725 19 6 3.9682 7.1504 2.1362 20 7 5.6866 5.3835 1.9725 21 6 6.5587 5.4298 3.1536 22 6 8.0001 5.3998 2.7151 23 6 8.6544 4.1904 2.5728 24 6 9.9753 4.1627 2.1663 25 6 10.6449 5.3450 1.9115 26 6 9.9922 6.5546 2.0585 27 6 8.6700 6.5820 2.4609 28 6 5.7446 4.0604 1.3242 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5139 -0.8900 32 1 1.8934 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 1.6767 1.9562 0.8900 35 1 1.6768 1.9563 -0.8899 36 1 3.9337 0.9284 -0.8891 37 1 3.9331 0.9287 0.8909 38 1 5.0164 2.7209 -4.2367 39 1 3.3388 5.2826 0.4003 40 1 2.4598 4.5787 1.7984 41 1 4.0808 7.4048 1.0823 42 1 2.9440 7.3511 2.4509 43 1 4.6555 7.7521 2.7307 44 1 6.3546 4.5687 3.7900 45 1 6.3674 6.3469 3.7107 46 1 8.1323 3.2670 2.7755 47 1 10.4853 3.2177 2.0511 48 1 11.6780 5.3235 1.5972 49 1 10.5152 7.4782 1.8590 50 1 8.1602 7.5271 2.5762 51 1 6.1429 4.1593 0.3145 52 1 6.3729 3.3884 1.9089 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001171759956.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:09:51 Heat of formation + Delta-G solvation = 41.694609 kcal Electronic energy + Delta-G solvation = -27621.767742 eV Core-core repulsion = 24200.207792 eV Total energy + Delta-G solvation = -3421.559950 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -39.56981 -38.36918 -36.18187 -33.96124 -32.77128 -31.57418 -30.79585 -30.22056 -29.43495 -27.55171 -25.56627 -24.73050 -23.84989 -22.51414 -22.06279 -20.89953 -20.56613 -19.88874 -19.14174 -16.61877 -16.55397 -15.76738 -15.48722 -15.18650 -15.02556 -14.69288 -14.53498 -13.75985 -13.55859 -13.37967 -13.36110 -13.03966 -12.96412 -12.60996 -12.48818 -12.42816 -12.12936 -11.99918 -11.73205 -11.61272 -11.49124 -11.31578 -11.15754 -10.98218 -10.73950 -10.63314 -10.54131 -10.48769 -10.32403 -10.25042 -10.21469 -9.92754 -9.58224 -9.40259 -8.75010 -8.60199 -8.43660 -7.83213 -6.74162 -5.96537 -3.36747 1.49884 1.56722 3.32765 3.49116 3.53519 3.87222 4.47322 4.55839 4.84919 4.94124 4.99001 5.13134 5.22571 5.25259 5.30253 5.39985 5.40426 5.48163 5.54882 5.60133 5.61998 5.65310 5.71355 5.79541 5.82371 5.91926 5.93650 6.03026 6.10447 6.14822 6.16177 6.16821 6.23499 6.26784 6.30990 6.37300 6.43061 6.53060 6.55954 6.59235 6.60923 6.64426 6.70484 6.79838 6.94779 6.99146 7.10025 7.14921 7.15404 7.51479 7.57235 8.10497 8.45418 9.04680 9.75909 10.16122 11.18995 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.012181 B = 0.004372 C = 0.003763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2298.174486 B = 6402.748924 C = 7439.724522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.126 4.126 3 C -0.131 4.131 4 C 0.138 3.862 5 N -0.594 5.594 6 C -0.258 4.258 7 H 0.081 0.919 8 C 0.041 3.959 9 N -0.896 5.896 10 Si 0.870 3.130 11 H -0.287 1.287 12 H -0.303 1.303 13 H -0.270 1.270 14 C 0.159 3.841 15 H 0.053 0.947 16 C -0.133 4.133 17 C 0.068 3.932 18 H 0.043 0.957 19 C -0.130 4.130 20 N -0.515 5.515 21 C 0.089 3.911 22 C -0.067 4.067 23 C -0.110 4.110 24 C -0.121 4.121 25 C -0.126 4.126 26 C -0.124 4.124 27 C -0.100 4.100 28 C 0.033 3.967 29 H 0.045 0.955 30 H 0.049 0.951 31 H 0.053 0.947 32 H 0.057 0.943 33 H 0.052 0.948 34 H 0.049 0.951 35 H 0.068 0.932 36 H 0.054 0.946 37 H 0.033 0.967 38 H 0.262 0.738 39 H 0.087 0.913 40 H 0.057 0.943 41 H 0.063 0.937 42 H 0.050 0.950 43 H 0.046 0.954 44 H 0.037 0.963 45 H 0.075 0.925 46 H 0.117 0.883 47 H 0.118 0.882 48 H 0.117 0.883 49 H 0.118 0.882 50 H 0.120 0.880 51 H 0.098 0.902 52 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.900 2.177 14.229 14.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.164 4.164 3 C -0.171 4.171 4 C 0.013 3.987 5 N -0.314 5.314 6 C -0.386 4.386 7 H 0.099 0.901 8 C -0.160 4.160 9 N -0.537 5.537 10 Si 0.700 3.300 11 H -0.216 1.216 12 H -0.231 1.231 13 H -0.195 1.195 14 C 0.050 3.950 15 H 0.071 0.929 16 C -0.173 4.173 17 C -0.040 4.040 18 H 0.061 0.939 19 C -0.188 4.188 20 N -0.239 5.239 21 C -0.039 4.039 22 C -0.068 4.068 23 C -0.129 4.129 24 C -0.139 4.139 25 C -0.144 4.144 26 C -0.142 4.142 27 C -0.118 4.118 28 C -0.096 4.096 29 H 0.064 0.936 30 H 0.068 0.932 31 H 0.072 0.928 32 H 0.076 0.924 33 H 0.071 0.929 34 H 0.068 0.932 35 H 0.087 0.913 36 H 0.072 0.928 37 H 0.051 0.949 38 H 0.072 0.928 39 H 0.106 0.894 40 H 0.076 0.924 41 H 0.082 0.918 42 H 0.069 0.931 43 H 0.065 0.935 44 H 0.055 0.945 45 H 0.094 0.906 46 H 0.135 0.865 47 H 0.136 0.864 48 H 0.135 0.865 49 H 0.136 0.864 50 H 0.138 0.862 51 H 0.116 0.884 52 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 3.117 2.539 13.694 14.272 hybrid contribution 0.436 -1.605 0.496 1.736 sum 3.553 0.934 14.190 14.658 Atomic orbital electron populations 1.21746 0.96540 1.00607 1.01606 1.21528 0.95272 0.98414 1.01171 1.22113 0.98479 0.94594 1.01942 1.21203 0.92161 0.86455 0.98888 1.44115 1.74601 1.11119 1.01593 1.18611 1.36471 0.96863 0.86679 0.90119 1.25450 0.97787 0.97522 0.95232 1.69876 1.44770 1.41210 0.97874 0.87038 0.81045 0.84043 0.77879 1.21552 1.23095 1.19458 1.21559 0.92366 0.92449 0.88614 0.92875 1.23151 0.97157 0.97131 0.99870 1.22488 0.88313 0.96106 0.97115 0.93880 1.21669 0.99673 0.94930 1.02546 1.63591 1.06281 1.30650 1.23394 1.21165 0.89716 1.00783 0.92198 1.19769 0.95084 0.93112 0.98825 1.21096 0.94651 0.97460 0.99682 1.21088 0.94880 0.98092 0.99884 1.21081 0.99794 0.92738 1.00788 1.21094 0.95039 0.97745 1.00312 1.20970 0.94202 0.97772 0.98893 1.23392 0.98460 0.86942 1.00822 0.93581 0.93180 0.92769 0.92437 0.92928 0.93203 0.91300 0.92848 0.94879 0.92815 0.89399 0.92392 0.91812 0.93053 0.93462 0.94461 0.90624 0.86473 0.86432 0.86531 0.86400 0.86207 0.88402 0.94350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.98 9.91 37.16 0.37 -1.61 16 2 C -0.13 -1.97 5.93 -26.73 -0.16 -2.13 16 3 C -0.13 -2.44 5.54 -26.73 -0.15 -2.59 16 4 C 0.14 2.92 4.51 -4.04 -0.02 2.90 16 5 N -0.59 -13.41 2.12 -163.60 -0.35 -13.76 16 6 C -0.26 -6.88 8.18 -15.06 -0.12 -7.00 16 7 H 0.08 2.37 6.85 -52.48 -0.36 2.01 16 8 C 0.04 1.15 5.27 -17.43 -0.09 1.06 16 9 N -0.90 -27.03 13.97 55.49 0.78 -26.25 16 10 Si 0.87 22.07 25.19 -169.99 -4.28 17.79 16 11 H -0.29 -7.12 6.65 56.52 0.38 -6.75 16 12 H -0.30 -7.91 7.11 56.52 0.40 -7.51 16 13 H -0.27 -6.71 7.11 56.52 0.40 -6.31 16 14 C 0.16 3.07 3.47 -66.11 -0.23 2.84 16 15 H 0.05 0.95 7.85 -51.93 -0.41 0.55 16 16 C -0.13 -2.35 6.05 -24.59 -0.15 -2.50 16 17 C 0.07 1.03 3.01 -66.19 -0.20 0.84 16 18 H 0.04 0.60 7.81 -51.93 -0.41 0.20 16 19 C -0.13 -1.78 9.61 37.16 0.36 -1.42 16 20 N -0.51 -8.55 4.80 -224.82 -1.08 -9.63 16 21 C 0.09 1.25 4.75 -4.98 -0.02 1.23 16 22 C -0.07 -0.97 5.10 -104.62 -0.53 -1.51 16 23 C -0.11 -1.60 8.74 -39.58 -0.35 -1.95 16 24 C -0.12 -1.63 10.05 -39.58 -0.40 -2.03 16 25 C -0.13 -1.58 10.05 -39.58 -0.40 -1.98 16 26 C -0.12 -1.55 10.05 -39.59 -0.40 -1.95 16 27 C -0.10 -1.35 9.70 -39.58 -0.38 -1.73 16 28 C 0.03 0.62 5.88 -2.83 -0.02 0.61 16 29 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 33 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 34 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 35 H 0.07 1.45 8.14 -51.93 -0.42 1.02 16 36 H 0.05 1.25 3.46 -51.93 -0.18 1.07 16 37 H 0.03 0.64 7.93 -51.93 -0.41 0.22 16 38 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 39 H 0.09 1.81 6.46 -51.93 -0.34 1.48 16 40 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 41 H 0.06 0.98 8.08 -51.93 -0.42 0.56 16 42 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 43 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 44 H 0.04 0.50 7.90 -51.93 -0.41 0.09 16 45 H 0.08 0.94 8.02 -51.93 -0.42 0.52 16 46 H 0.12 1.65 6.93 -52.49 -0.36 1.28 16 47 H 0.12 1.36 8.06 -52.49 -0.42 0.94 16 48 H 0.12 1.19 8.06 -52.48 -0.42 0.76 16 49 H 0.12 1.19 8.06 -52.49 -0.42 0.77 16 50 H 0.12 1.44 8.06 -52.49 -0.42 1.02 16 51 H 0.10 2.30 6.93 -51.93 -0.36 1.94 16 52 H 0.04 0.70 5.52 -51.93 -0.29 0.41 16 LS Contribution 398.45 15.07 6.00 6.00 Total: -1.00 -29.19 398.45 -11.25 -40.44 By element: Atomic # 1 Polarization: 13.77 SS G_CDS: -9.44 Total: 4.33 kcal Atomic # 6 Polarization: -16.05 SS G_CDS: -2.89 Total: -18.94 kcal Atomic # 7 Polarization: -48.99 SS G_CDS: -0.65 Total: -49.64 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -4.28 Total: 17.79 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -29.19 -11.25 -40.44 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001171759956.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.137 kcal (2) G-P(sol) polarization free energy of solvation -29.190 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.948 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.443 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds