Wall clock time and date at job start Tue Mar 31 2020 11:09:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.47581 * 2 1 4 4 C 1.53003 * 109.47649 * 179.97438 * 3 2 1 5 5 N 1.46495 * 109.47315 * 179.97438 * 4 3 2 6 6 C 1.36932 * 120.00169 * 270.00239 * 5 4 3 7 7 H 1.08004 * 119.99912 * 141.74007 * 6 5 4 8 8 C 1.38807 * 120.00136 * 321.74290 * 6 5 4 9 9 N 1.31618 * 120.00419 * 156.35833 * 8 6 5 10 10 Si 1.86805 * 119.99809 * 336.35230 * 8 6 5 11 11 H 1.48493 * 109.47073 * 95.19551 * 10 8 6 12 12 H 1.48498 * 109.47168 * 215.19590 * 10 8 6 13 13 H 1.48498 * 109.47075 * 335.19577 * 10 8 6 14 14 C 1.46499 * 119.99757 * 90.00272 * 5 4 3 15 15 H 1.09005 * 110.62821 * 2.18908 * 14 5 4 16 16 C 1.55144 * 110.85631 * 238.98140 * 14 5 4 17 17 C 1.54905 * 101.65196 * 205.89326 * 16 14 5 18 18 H 1.08997 * 110.37490 * 278.23452 * 17 16 14 19 19 C 1.53004 * 110.37290 * 155.89942 * 17 16 14 20 20 N 1.47843 * 104.80015 * 37.07233 * 17 16 14 21 21 C 1.46898 * 111.00083 * 213.63605 * 20 17 16 22 22 C 1.50695 * 109.46888 * 190.71292 * 21 20 17 23 23 C 1.38240 * 120.00220 * 269.72076 * 22 21 20 24 24 C 1.38235 * 120.00103 * 179.78483 * 23 22 21 25 25 C 1.38234 * 119.99673 * 0.47148 * 24 23 22 26 26 C 1.38235 * 120.00503 * 359.76613 * 25 24 23 27 27 C 1.38230 * 119.99603 * 0.02562 * 26 25 24 28 28 C 1.47446 * 108.56149 * 335.90411 * 20 17 16 29 29 H 1.08996 * 109.47255 * 179.97438 * 1 2 3 30 30 H 1.08993 * 109.46902 * 299.99980 * 1 2 3 31 31 H 1.09005 * 109.46668 * 59.99830 * 1 2 3 32 32 H 1.09003 * 109.47259 * 239.99587 * 2 1 3 33 33 H 1.09005 * 109.47181 * 120.00293 * 2 1 3 34 34 H 1.08999 * 109.46713 * 59.99755 * 3 2 1 35 35 H 1.08998 * 109.47415 * 300.00447 * 3 2 1 36 36 H 1.08996 * 109.46536 * 59.99654 * 4 3 2 37 37 H 1.09005 * 109.46927 * 300.00370 * 4 3 2 38 38 H 0.96993 * 120.00161 * 180.02562 * 9 8 6 39 39 H 1.08996 * 110.99195 * 323.98443 * 16 14 5 40 40 H 1.09003 * 110.99140 * 87.76706 * 16 14 5 41 41 H 1.09000 * 109.47079 * 307.04879 * 19 17 16 42 42 H 1.09007 * 109.47235 * 67.04155 * 19 17 16 43 43 H 1.08993 * 109.47745 * 187.04401 * 19 17 16 44 44 H 1.08997 * 109.47106 * 70.71433 * 21 20 17 45 45 H 1.08998 * 109.46798 * 310.70984 * 21 20 17 46 46 H 1.07998 * 119.99853 * 0.02562 * 23 22 21 47 47 H 1.07998 * 120.00264 * 180.25280 * 24 23 22 48 48 H 1.08003 * 119.99751 * 179.78310 * 25 24 23 49 49 H 1.07997 * 120.00140 * 180.02562 * 26 25 24 50 50 H 1.07999 * 119.99995 * 179.97438 * 27 26 25 51 51 H 1.08996 * 109.89387 * 120.39630 * 28 20 17 52 52 H 1.09007 * 109.88355 * 241.58322 * 28 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5701 1.4424 0.0006 5 7 4.0585 2.8236 0.0000 6 6 4.2872 3.4684 -1.1861 7 1 4.0432 4.5157 -1.2872 8 6 4.8325 2.7762 -2.2586 9 7 4.6356 3.2049 -3.4873 10 14 5.8462 1.2362 -1.9579 11 1 4.9779 0.0387 -2.0889 12 1 6.9437 1.1633 -2.9555 13 1 6.4227 1.2823 -0.5902 14 6 4.3021 3.5149 1.2685 15 1 4.1083 2.8510 2.1110 16 6 3.4385 4.7995 1.3722 17 6 4.2826 5.6668 2.3391 18 1 4.0941 5.3760 3.3725 19 6 3.9682 7.1504 2.1362 20 7 5.6866 5.3835 1.9725 21 6 6.5587 5.4298 3.1536 22 6 8.0001 5.3998 2.7151 23 6 8.6544 4.1904 2.5728 24 6 9.9753 4.1627 2.1663 25 6 10.6449 5.3450 1.9115 26 6 9.9922 6.5546 2.0585 27 6 8.6700 6.5820 2.4609 28 6 5.7446 4.0604 1.3242 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5139 -0.8900 32 1 1.8934 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 1.6767 1.9562 0.8900 35 1 1.6768 1.9563 -0.8899 36 1 3.9337 0.9284 -0.8891 37 1 3.9331 0.9287 0.8909 38 1 5.0164 2.7209 -4.2367 39 1 3.3388 5.2826 0.4003 40 1 2.4598 4.5787 1.7984 41 1 4.0808 7.4048 1.0823 42 1 2.9440 7.3511 2.4509 43 1 4.6555 7.7521 2.7307 44 1 6.3546 4.5687 3.7900 45 1 6.3674 6.3469 3.7107 46 1 8.1323 3.2670 2.7755 47 1 10.4853 3.2177 2.0511 48 1 11.6780 5.3235 1.5972 49 1 10.5152 7.4782 1.8590 50 1 8.1602 7.5271 2.5762 51 1 6.1429 4.1593 0.3145 52 1 6.3729 3.3884 1.9089 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001171759956.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:09:50 Heat of formation + Delta-G solvation = 26.745250 kcal Electronic energy + Delta-G solvation = -27622.415995 eV Core-core repulsion = 24200.207792 eV Total energy + Delta-G solvation = -3422.208202 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.78938 -39.60586 -37.75960 -35.39599 -34.12394 -33.42137 -31.85804 -31.48451 -30.71350 -29.15163 -26.84757 -26.33857 -25.29653 -23.76810 -23.33925 -22.04711 -21.98626 -21.34616 -20.62399 -18.45751 -17.60467 -17.38568 -17.07819 -16.53761 -16.11646 -16.10074 -15.93208 -15.21471 -14.88940 -14.82207 -14.52389 -14.45416 -14.35596 -14.14743 -13.72510 -13.64480 -13.43434 -13.33501 -13.20219 -13.06631 -12.87408 -12.70740 -12.67836 -12.34478 -12.22731 -11.97226 -11.87771 -11.79299 -11.76692 -11.73080 -11.60249 -11.49020 -11.29451 -11.18566 -10.54477 -9.77008 -9.64158 -9.13044 -8.64172 -8.16087 -5.51052 0.47450 0.54696 1.27149 1.38616 1.48204 2.43183 2.79486 3.04683 3.20722 3.41572 3.83598 3.95485 3.98140 4.09675 4.12115 4.17231 4.20931 4.25846 4.29515 4.37015 4.39169 4.43591 4.47057 4.55900 4.62511 4.64481 4.71179 4.74473 4.80652 4.88810 4.94161 4.98991 5.00435 5.03166 5.07470 5.14155 5.16270 5.19460 5.20150 5.35313 5.40348 5.45820 5.47945 5.52096 5.59210 5.60436 5.64499 5.74935 6.00663 6.15152 6.17949 6.27016 6.34651 7.06232 7.70163 8.10766 9.04252 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.012181 B = 0.004372 C = 0.003763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2298.174486 B = 6402.748924 C = 7439.724522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.123 4.123 3 C -0.120 4.120 4 C 0.131 3.869 5 N -0.603 5.603 6 C -0.226 4.226 7 H 0.041 0.959 8 C -0.017 4.017 9 N -0.949 5.949 10 Si 0.930 3.070 11 H -0.277 1.277 12 H -0.316 1.316 13 H -0.261 1.261 14 C 0.152 3.848 15 H 0.080 0.920 16 C -0.127 4.127 17 C 0.074 3.926 18 H 0.071 0.929 19 C -0.125 4.125 20 N -0.529 5.529 21 C 0.093 3.907 22 C -0.085 4.085 23 C -0.130 4.130 24 C -0.135 4.135 25 C -0.131 4.131 26 C -0.129 4.129 27 C -0.112 4.112 28 C 0.046 3.954 29 H 0.066 0.934 30 H 0.061 0.939 31 H 0.042 0.958 32 H 0.044 0.956 33 H 0.074 0.926 34 H 0.063 0.937 35 H 0.033 0.967 36 H 0.029 0.971 37 H 0.061 0.939 38 H 0.259 0.741 39 H 0.047 0.953 40 H 0.075 0.925 41 H 0.036 0.964 42 H 0.070 0.930 43 H 0.064 0.936 44 H 0.046 0.954 45 H 0.096 0.904 46 H 0.115 0.885 47 H 0.131 0.869 48 H 0.140 0.860 49 H 0.142 0.858 50 H 0.132 0.868 51 H 0.045 0.955 52 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.904 1.550 17.611 17.916 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.161 4.161 3 C -0.160 4.160 4 C 0.007 3.993 5 N -0.325 5.325 6 C -0.356 4.356 7 H 0.059 0.941 8 C -0.213 4.213 9 N -0.593 5.593 10 Si 0.760 3.240 11 H -0.204 1.204 12 H -0.245 1.245 13 H -0.185 1.185 14 C 0.044 3.956 15 H 0.098 0.902 16 C -0.167 4.167 17 C -0.033 4.033 18 H 0.089 0.911 19 C -0.183 4.183 20 N -0.254 5.254 21 C -0.034 4.034 22 C -0.086 4.086 23 C -0.148 4.148 24 C -0.153 4.153 25 C -0.149 4.149 26 C -0.147 4.147 27 C -0.131 4.131 28 C -0.083 4.083 29 H 0.085 0.915 30 H 0.080 0.920 31 H 0.062 0.938 32 H 0.063 0.937 33 H 0.092 0.908 34 H 0.082 0.918 35 H 0.052 0.948 36 H 0.047 0.953 37 H 0.079 0.921 38 H 0.068 0.932 39 H 0.066 0.934 40 H 0.094 0.906 41 H 0.055 0.945 42 H 0.089 0.911 43 H 0.083 0.917 44 H 0.065 0.935 45 H 0.114 0.886 46 H 0.133 0.867 47 H 0.149 0.851 48 H 0.158 0.842 49 H 0.160 0.840 50 H 0.150 0.850 51 H 0.064 0.936 52 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 3.110 1.903 17.133 17.517 hybrid contribution 0.427 -1.302 -0.485 1.453 sum 3.537 0.601 16.648 17.030 Atomic orbital electron populations 1.21712 0.94718 1.02029 1.01687 1.21506 0.96892 0.96058 1.01624 1.21951 0.96581 0.96640 1.00842 1.21323 0.93813 0.85262 0.98915 1.44209 1.75030 1.11760 1.01468 1.18351 1.33898 0.95230 0.88146 0.94127 1.25964 0.99471 1.00847 0.94991 1.70000 1.47137 1.43455 0.98744 0.86050 0.79186 0.81292 0.77519 1.20406 1.24480 1.18478 1.21807 0.92889 0.93257 0.87616 0.90163 1.23024 0.98368 0.96516 0.98799 1.22525 0.86755 0.96505 0.97563 0.91086 1.21628 1.01398 0.94080 1.01179 1.63479 1.07646 1.28978 1.25301 1.21210 0.88866 1.02174 0.91164 1.19936 0.95514 0.93494 0.99612 1.21241 0.95393 0.97578 1.00617 1.21378 0.94823 0.99285 0.99823 1.21435 1.00982 0.92453 1.00073 1.21453 0.94921 0.98869 0.99464 1.21230 0.94856 0.98035 0.98929 1.23040 0.98044 0.88649 0.98567 0.91505 0.91998 0.93849 0.93676 0.90764 0.91782 0.94837 0.95333 0.92096 0.93209 0.93419 0.90628 0.94511 0.91077 0.91725 0.93543 0.88571 0.86675 0.85059 0.84179 0.84025 0.85039 0.93632 0.93404 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.52 9.91 71.98 0.71 -2.80 16 2 C -0.12 -3.58 5.93 30.59 0.18 -3.40 16 3 C -0.12 -4.34 5.54 30.59 0.17 -4.17 16 4 C 0.13 5.40 4.51 86.38 0.39 5.79 16 5 N -0.60 -27.40 2.12 -671.50 -1.42 -28.82 16 6 C -0.23 -12.63 8.18 84.03 0.69 -11.94 16 7 H 0.04 2.58 6.85 -2.91 -0.02 2.56 16 8 C -0.02 -0.99 5.27 84.86 0.45 -0.54 16 9 N -0.95 -60.29 13.97 21.65 0.30 -59.98 16 10 Si 0.93 47.15 25.19 68.60 1.73 48.87 16 11 H -0.28 -13.39 6.65 99.48 0.66 -12.73 16 12 H -0.32 -16.51 7.11 99.48 0.71 -15.81 16 13 H -0.26 -12.62 7.11 99.48 0.71 -11.91 16 14 C 0.15 5.70 3.47 46.17 0.16 5.86 16 15 H 0.08 2.62 7.85 -2.38 -0.02 2.60 16 16 C -0.13 -4.40 6.05 31.98 0.19 -4.21 16 17 C 0.07 2.10 3.01 45.39 0.14 2.24 16 18 H 0.07 1.67 7.81 -2.39 -0.02 1.66 16 19 C -0.13 -3.18 9.61 71.98 0.69 -2.49 16 20 N -0.53 -16.99 4.80 -865.19 -4.15 -21.14 16 21 C 0.09 2.40 4.75 85.56 0.41 2.81 16 22 C -0.09 -2.36 5.10 -19.87 -0.10 -2.46 16 23 C -0.13 -3.66 8.74 22.27 0.19 -3.47 16 24 C -0.14 -3.49 10.05 22.27 0.22 -3.26 16 25 C -0.13 -3.08 10.05 22.27 0.22 -2.85 16 26 C -0.13 -3.01 10.05 22.27 0.22 -2.79 16 27 C -0.11 -2.86 9.70 22.27 0.22 -2.65 16 28 C 0.05 1.77 5.88 86.65 0.51 2.28 16 29 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 30 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 31 H 0.04 1.14 8.14 -2.38 -0.02 1.12 16 32 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 33 H 0.07 1.86 8.14 -2.38 -0.02 1.85 16 34 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 35 H 0.03 1.42 8.14 -2.39 -0.02 1.40 16 36 H 0.03 1.33 3.46 -2.39 -0.01 1.32 16 37 H 0.06 2.17 7.93 -2.38 -0.02 2.15 16 38 H 0.26 15.75 8.31 -92.71 -0.77 14.98 16 39 H 0.05 2.04 6.46 -2.39 -0.02 2.02 16 40 H 0.08 2.31 8.14 -2.39 -0.02 2.29 16 41 H 0.04 1.12 8.08 -2.39 -0.02 1.10 16 42 H 0.07 1.53 8.14 -2.38 -0.02 1.51 16 43 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 44 H 0.05 1.12 7.90 -2.39 -0.02 1.10 16 45 H 0.10 2.07 8.02 -2.39 -0.02 2.05 16 46 H 0.12 3.17 6.93 -2.91 -0.02 3.14 16 47 H 0.13 2.88 8.06 -2.91 -0.02 2.86 16 48 H 0.14 2.53 8.06 -2.91 -0.02 2.50 16 49 H 0.14 2.53 8.06 -2.91 -0.02 2.50 16 50 H 0.13 2.93 8.06 -2.91 -0.02 2.91 16 51 H 0.05 2.22 6.93 -2.39 -0.02 2.20 16 52 H 0.05 1.70 5.52 -2.38 -0.01 1.69 16 Total: -1.00 -67.42 398.45 2.93 -64.49 By element: Atomic # 1 Polarization: 23.84 SS G_CDS: 0.81 Total: 24.65 kcal Atomic # 6 Polarization: -33.74 SS G_CDS: 5.67 Total: -28.07 kcal Atomic # 7 Polarization: -104.68 SS G_CDS: -5.27 Total: -109.95 kcal Atomic # 14 Polarization: 47.15 SS G_CDS: 1.73 Total: 48.87 kcal Total: -67.42 2.93 -64.49 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001171759956.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.237 kcal (2) G-P(sol) polarization free energy of solvation -67.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.933 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.492 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.745 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds