Wall clock time and date at job start Tue Mar 31 2020 11:22:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52996 * 109.47256 * 2 1 4 4 N 1.46906 * 109.47378 * 182.00305 * 3 2 1 5 5 C 1.46899 * 110.99875 * 287.04183 * 4 3 2 6 6 C 1.50699 * 109.47379 * 76.26632 * 5 4 3 7 7 H 1.07995 * 120.00232 * 4.85579 * 6 5 4 8 8 C 1.37877 * 120.00139 * 184.85700 * 6 5 4 9 9 N 1.31512 * 119.99914 * 359.97438 * 8 6 5 10 10 Si 1.86796 * 120.00233 * 179.97438 * 8 6 5 11 11 H 1.48504 * 109.47389 * 89.99858 * 10 8 6 12 12 H 1.48501 * 109.47605 * 210.00215 * 10 8 6 13 13 H 1.48507 * 109.47028 * 330.00069 * 10 8 6 14 14 C 1.46898 * 111.00321 * 163.08567 * 4 3 2 15 15 H 1.09009 * 110.36546 * 312.16806 * 14 4 3 16 16 C 1.54560 * 110.42507 * 189.86017 * 14 4 3 17 17 C 1.54374 * 105.09267 * 241.12578 * 16 14 4 18 18 H 1.08997 * 110.51504 * 94.98762 * 17 16 14 19 19 C 1.53004 * 110.40992 * 217.37880 * 17 16 14 20 20 N 1.48562 * 104.59269 * 336.15239 * 17 16 14 21 21 C 1.46907 * 110.99636 * 159.04239 * 20 17 16 22 22 C 1.50697 * 109.47080 * 314.45586 * 21 20 17 23 23 C 1.38228 * 120.00011 * 269.72850 * 22 21 20 24 24 C 1.38242 * 120.00215 * 179.77167 * 23 22 21 25 25 C 1.38240 * 119.99246 * 0.47858 * 24 23 22 26 26 C 1.38227 * 120.00277 * 359.79903 * 25 24 23 27 27 C 1.38238 * 120.00487 * 359.94734 * 26 25 24 28 28 C 1.48554 * 104.21814 * 39.48748 * 20 17 16 29 29 H 1.08999 * 109.47106 * 59.99803 * 1 2 3 30 30 H 1.09002 * 109.47363 * 180.02562 * 1 2 3 31 31 H 1.09007 * 109.46609 * 299.99909 * 1 2 3 32 32 H 1.08999 * 109.47310 * 239.99654 * 2 1 3 33 33 H 1.08999 * 109.47106 * 120.00197 * 2 1 3 34 34 H 1.08999 * 109.47081 * 62.00631 * 3 2 1 35 35 H 1.08996 * 109.47124 * 302.00370 * 3 2 1 36 36 H 1.09002 * 109.47374 * 196.26690 * 5 4 3 37 37 H 1.09004 * 109.47325 * 316.26158 * 5 4 3 38 38 H 0.97001 * 119.99998 * 179.97438 * 9 8 6 39 39 H 1.09000 * 110.30116 * 122.21939 * 16 14 4 40 40 H 1.09011 * 110.40099 * 0.07901 * 16 14 4 41 41 H 1.08998 * 109.47402 * 176.62504 * 19 17 16 42 42 H 1.09004 * 109.47108 * 296.62230 * 19 17 16 43 43 H 1.08999 * 109.47500 * 56.62186 * 19 17 16 44 44 H 1.09003 * 109.46756 * 74.45979 * 21 20 17 45 45 H 1.08999 * 109.46770 * 194.45342 * 21 20 17 46 46 H 1.08004 * 120.00464 * 359.97438 * 23 22 21 47 47 H 1.07991 * 120.00380 * 180.24927 * 24 23 22 48 48 H 1.08004 * 119.99475 * 179.76894 * 25 24 23 49 49 H 1.08002 * 120.00381 * 179.97438 * 26 25 24 50 50 H 1.07991 * 120.00441 * 180.02562 * 27 26 25 51 51 H 1.09000 * 110.41199 * 79.29847 * 28 20 17 52 52 H 1.09000 * 110.41153 * 201.61653 * 28 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5083 1.4428 -0.0484 5 6 4.0775 1.0257 1.2400 6 6 3.9477 -0.4685 1.3864 7 1 3.5605 -1.0596 0.5697 8 6 4.3233 -1.0811 2.5632 9 7 4.7953 -0.3615 3.5576 10 14 4.1618 -2.9332 2.7450 11 1 5.4171 -3.5862 2.2944 12 1 3.9118 -3.2709 4.1693 13 1 3.0279 -3.4149 1.9158 14 6 4.0216 2.7595 -0.4492 15 1 3.4878 3.1236 -1.3272 16 6 5.5385 2.6828 -0.7353 17 6 6.1882 3.6475 0.2798 18 1 6.5166 3.1049 1.1662 19 6 7.3670 4.3825 -0.3617 20 7 5.1083 4.6060 0.6294 21 6 5.3846 5.2650 1.9129 22 6 5.8280 4.2361 2.9207 23 6 4.8935 3.6015 3.7174 24 6 5.2996 2.6542 4.6387 25 6 6.6415 2.3487 4.7699 26 6 7.5765 2.9874 3.9771 27 6 7.1698 3.9309 3.0523 28 6 3.8871 3.7644 0.7149 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8901 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5139 0.8900 34 1 1.7063 1.9458 0.9074 35 1 1.6476 1.9665 -0.8714 36 1 5.1305 1.3045 1.2793 37 1 3.5409 1.5183 2.0509 38 1 5.0592 -0.7924 4.3856 39 1 5.7481 3.0080 -1.7543 40 1 5.9037 1.6675 -0.5799 41 1 7.7762 5.1017 0.3477 42 1 8.1385 3.6627 -0.6352 43 1 7.0260 4.9065 -1.2545 44 1 6.1731 6.0056 1.7787 45 1 4.4804 5.7577 2.2703 46 1 3.8456 3.8434 3.6180 47 1 4.5692 2.1555 5.2583 48 1 6.9592 1.6113 5.4922 49 1 8.6249 2.7491 4.0799 50 1 7.9003 4.4296 2.4327 51 1 3.8539 3.2387 1.6692 52 1 2.9941 4.3763 0.5877 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001171763731.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:22:38 Heat of formation + Delta-G solvation = 40.024820 kcal Electronic energy + Delta-G solvation = -29165.428190 eV Core-core repulsion = 25743.795833 eV Total energy + Delta-G solvation = -3421.632357 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.06336 -38.10000 -36.21075 -33.03608 -32.56808 -31.92359 -30.55369 -29.97734 -28.73521 -27.11790 -25.59558 -24.84489 -23.85059 -22.34055 -21.87806 -21.09749 -20.33069 -19.19931 -18.75314 -16.60075 -16.24443 -15.81005 -15.05441 -14.89885 -14.61875 -14.42524 -14.25359 -14.09395 -13.71403 -13.40879 -13.04789 -12.82004 -12.64053 -12.40351 -12.15017 -12.10225 -11.90864 -11.76652 -11.67572 -11.26679 -11.14244 -11.01986 -10.97427 -10.79209 -10.71805 -10.63888 -10.53766 -10.40437 -10.31956 -10.19442 -9.92753 -9.79071 -9.33363 -9.04538 -8.32476 -8.27816 -8.09194 -8.01046 -7.16323 -5.95402 -3.93118 1.92490 2.02637 3.31796 3.38602 3.42249 4.30150 4.43031 4.51711 4.96288 5.11020 5.14986 5.29917 5.36047 5.40049 5.50535 5.55141 5.65642 5.68862 5.74728 5.80685 5.83640 5.86208 5.96974 6.01500 6.05893 6.06911 6.11514 6.17070 6.20514 6.24834 6.28753 6.35609 6.42524 6.52274 6.55131 6.58284 6.60938 6.63533 6.70353 6.72706 6.99372 7.02749 7.07368 7.21197 7.23201 7.37213 7.40834 7.44276 7.48412 7.59713 7.89956 8.21564 8.29246 8.64523 9.10597 9.66340 11.11875 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.010447 B = 0.006589 C = 0.004860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2679.486098 B = 4248.199998 C = 5759.424681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.132 4.132 3 C 0.076 3.924 4 N -0.532 5.532 5 C 0.199 3.801 6 C -0.504 4.504 7 H 0.068 0.932 8 C 0.059 3.941 9 N -0.881 5.881 10 Si 0.885 3.115 11 H -0.284 1.284 12 H -0.290 1.290 13 H -0.275 1.275 14 C 0.086 3.914 15 H 0.072 0.928 16 C -0.109 4.109 17 C 0.045 3.955 18 H 0.077 0.923 19 C -0.131 4.131 20 N -0.495 5.495 21 C 0.083 3.917 22 C -0.123 4.123 23 C -0.106 4.106 24 C -0.065 4.065 25 C -0.097 4.097 26 C -0.125 4.125 27 C -0.118 4.118 28 C -0.015 4.015 29 H 0.040 0.960 30 H 0.046 0.954 31 H 0.045 0.955 32 H 0.056 0.944 33 H 0.106 0.894 34 H 0.019 0.981 35 H 0.045 0.955 36 H 0.026 0.974 37 H -0.004 1.004 38 H 0.255 0.745 39 H 0.061 0.939 40 H 0.082 0.918 41 H 0.048 0.952 42 H 0.054 0.946 43 H 0.057 0.943 44 H 0.077 0.923 45 H 0.073 0.927 46 H 0.107 0.893 47 H 0.116 0.884 48 H 0.112 0.888 49 H 0.110 0.890 50 H 0.111 0.889 51 H 0.076 0.924 52 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.341 9.471 -1.781 9.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.170 4.170 3 C -0.053 4.053 4 N -0.255 5.255 5 C 0.074 3.926 6 C -0.543 4.543 7 H 0.086 0.914 8 C -0.143 4.143 9 N -0.521 5.521 10 Si 0.714 3.286 11 H -0.210 1.210 12 H -0.216 1.216 13 H -0.200 1.200 14 C -0.025 4.025 15 H 0.090 0.910 16 C -0.147 4.147 17 C -0.063 4.063 18 H 0.094 0.906 19 C -0.189 4.189 20 N -0.218 5.218 21 C -0.045 4.045 22 C -0.125 4.125 23 C -0.125 4.125 24 C -0.083 4.083 25 C -0.116 4.116 26 C -0.143 4.143 27 C -0.137 4.137 28 C -0.145 4.145 29 H 0.059 0.941 30 H 0.065 0.935 31 H 0.064 0.936 32 H 0.075 0.925 33 H 0.124 0.876 34 H 0.038 0.962 35 H 0.063 0.937 36 H 0.044 0.956 37 H 0.014 0.986 38 H 0.065 0.935 39 H 0.080 0.920 40 H 0.101 0.899 41 H 0.067 0.933 42 H 0.073 0.927 43 H 0.076 0.924 44 H 0.095 0.905 45 H 0.091 0.909 46 H 0.125 0.875 47 H 0.134 0.866 48 H 0.130 0.870 49 H 0.128 0.872 50 H 0.129 0.871 51 H 0.094 0.906 52 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 1.493 9.558 -2.376 9.961 hybrid contribution -0.284 -1.222 1.439 1.909 sum 1.209 8.336 -0.937 8.475 Atomic orbital electron populations 1.21783 0.97921 1.00549 1.00350 1.21943 0.92711 0.97337 1.04974 1.21854 0.88607 0.96895 0.97914 1.62375 1.05643 1.22465 1.35021 1.19716 0.94520 0.95537 0.82781 1.21298 1.41582 0.92200 0.99218 0.91395 1.24916 0.95769 0.97413 0.96186 1.69984 1.43317 1.34511 1.04248 0.86713 0.78365 0.86655 0.76907 1.21003 1.21631 1.20003 1.22423 0.95602 0.88580 0.95850 0.91005 1.22423 0.94542 0.99889 0.97842 1.22913 0.92028 0.92606 0.98787 0.90573 1.21682 0.96985 0.99779 1.00468 1.65724 1.03181 1.26759 1.26124 1.21283 1.00914 0.94989 0.87332 1.20322 0.93899 1.00195 0.98076 1.20868 0.98122 0.97431 0.96081 1.20895 0.95678 0.94508 0.97214 1.20930 0.93401 0.98033 0.99208 1.20978 0.98981 0.97472 0.96878 1.20816 0.94962 0.99210 0.98704 1.24080 0.92942 0.95639 1.01811 0.94090 0.93463 0.93554 0.92542 0.87564 0.96243 0.93663 0.95573 0.98614 0.93490 0.91983 0.89937 0.93328 0.92688 0.92401 0.90490 0.90868 0.87453 0.86566 0.87019 0.87150 0.87137 0.90582 0.91771 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.34 9.91 37.16 0.37 -1.97 16 2 C -0.13 -2.54 4.83 -26.73 -0.13 -2.67 16 3 C 0.08 1.45 4.66 -3.82 -0.02 1.43 16 4 N -0.53 -11.07 4.38 -226.23 -0.99 -12.06 16 5 C 0.20 4.79 3.29 -4.98 -0.02 4.77 16 6 C -0.50 -13.19 6.88 -34.44 -0.24 -13.43 16 7 H 0.07 1.80 6.12 -52.49 -0.32 1.48 16 8 C 0.06 1.56 5.46 -17.82 -0.10 1.46 16 9 N -0.88 -23.42 13.25 55.43 0.73 -22.69 16 10 Si 0.88 20.92 29.54 -169.99 -5.02 15.90 16 11 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 12 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 13 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 14 C 0.09 1.56 3.11 -66.17 -0.21 1.36 16 15 H 0.07 1.24 7.84 -51.92 -0.41 0.84 16 16 C -0.11 -1.91 5.54 -25.19 -0.14 -2.05 16 17 C 0.04 0.73 2.15 -66.07 -0.14 0.59 16 18 H 0.08 1.45 4.39 -51.93 -0.23 1.22 16 19 C -0.13 -1.78 9.24 37.16 0.34 -1.44 16 20 N -0.50 -7.91 5.33 -223.57 -1.19 -9.10 16 21 C 0.08 1.23 5.58 -4.97 -0.03 1.20 16 22 C -0.12 -2.02 3.84 -104.63 -0.40 -2.42 16 23 C -0.11 -1.89 8.04 -39.58 -0.32 -2.21 16 24 C -0.06 -1.20 10.01 -39.58 -0.40 -1.60 16 25 C -0.10 -1.72 10.05 -39.58 -0.40 -2.12 16 26 C -0.12 -2.05 10.05 -39.59 -0.40 -2.45 16 27 C -0.12 -1.88 7.50 -39.58 -0.30 -2.18 16 28 C -0.02 -0.27 5.36 -2.19 -0.01 -0.28 16 29 H 0.04 0.58 8.14 -51.93 -0.42 0.15 16 30 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.06 1.10 8.13 -51.93 -0.42 0.68 16 33 H 0.11 2.39 5.14 -51.93 -0.27 2.13 16 34 H 0.02 0.39 7.73 -51.93 -0.40 -0.01 16 35 H 0.04 0.78 7.78 -51.93 -0.40 0.38 16 36 H 0.03 0.69 5.94 -51.93 -0.31 0.38 16 37 H 0.00 -0.10 6.45 -51.93 -0.34 -0.44 16 38 H 0.26 6.60 8.31 -40.82 -0.34 6.26 16 39 H 0.06 0.98 7.84 -51.93 -0.41 0.57 16 40 H 0.08 1.66 7.11 -51.92 -0.37 1.29 16 41 H 0.05 0.61 7.08 -51.93 -0.37 0.24 16 42 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 43 H 0.06 0.75 8.12 -51.93 -0.42 0.33 16 44 H 0.08 1.02 7.83 -51.93 -0.41 0.62 16 45 H 0.07 1.03 8.03 -51.93 -0.42 0.61 16 46 H 0.11 1.87 7.53 -52.48 -0.40 1.48 16 47 H 0.12 2.20 8.06 -52.49 -0.42 1.77 16 48 H 0.11 1.86 8.06 -52.48 -0.42 1.44 16 49 H 0.11 1.57 8.06 -52.49 -0.42 1.14 16 50 H 0.11 1.56 7.19 -52.49 -0.38 1.18 16 51 H 0.08 1.51 2.69 -51.93 -0.14 1.37 16 52 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 LS Contribution 385.45 15.07 5.81 5.81 Total: -1.00 -26.35 385.45 -12.09 -38.45 By element: Atomic # 1 Polarization: 16.62 SS G_CDS: -8.91 Total: 7.71 kcal Atomic # 6 Polarization: -21.49 SS G_CDS: -2.52 Total: -24.01 kcal Atomic # 7 Polarization: -42.40 SS G_CDS: -1.45 Total: -43.85 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -26.35 -12.09 -38.45 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001171763731.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.472 kcal (2) G-P(sol) polarization free energy of solvation -26.352 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.120 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.447 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.025 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds